BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0622500 Os02g0622500|AK067651
(137 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0622500 RNA-binding region RNP-1 (RNA recognition moti... 246 5e-66
Os08g0567200 RNA-binding region RNP-1 (RNA recognition moti... 164 2e-41
Os08g0520300 Similar to Oligouridylate binding protein 82 8e-17
Os07g0615400 Similar to Oligouridylate binding protein 78 2e-15
Os04g0449900 Similar to RNA Binding Protein 47 73 6e-14
Os09g0462700 Similar to RNA Binding Protein 47 70 6e-13
Os02g0567900 Similar to RNA Binding Protein 47 69 1e-12
Os04g0625800 Similar to RNA Binding Protein 45 69 2e-12
Os03g0174100 Similar to RNA Binding Protein 45 67 3e-12
Os03g0569900 Similar to RNA Binding Protein 45 67 5e-12
Os01g0916600 RNA-binding region RNP-1 (RNA recognition moti... 66 9e-12
>Os02g0622500 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 137
Score = 246 bits (627), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 121/137 (88%), Positives = 121/137 (88%)
Query: 1 QLFFSNVPSFYFKAFTLTSDKFSPSTDDFRLFCGDLGNEVNDDVLTKAFSKYPSFNMARV 60
QLFFSNVPSFYFKAFTLTSDKFSPSTDDFRLFCGDLGNEVNDDVLTKAFSKYPSFNMARV
Sbjct: 1 QLFFSNVPSFYFKAFTLTSDKFSPSTDDFRLFCGDLGNEVNDDVLTKAFSKYPSFNMARV 60
Query: 61 IRDKWTGKTRGYAFVSFANASDLAAALKEMNGKYVGNRPIKLRKSTWKNRIDYEALXXXX 120
IRDKWTGKTRGYAFVSFANASDLAAALKEMNGKYVGNRPIKLRKSTWKNRIDYEAL
Sbjct: 61 IRDKWTGKTRGYAFVSFANASDLAAALKEMNGKYVGNRPIKLRKSTWKNRIDYEALQKPK 120
Query: 121 XXXXXXXXXXXXSILHK 137
SILHK
Sbjct: 121 TQPQKKFKAQKKSILHK 137
>Os08g0567200 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 235
Score = 164 bits (416), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 76/111 (68%), Positives = 87/111 (78%)
Query: 27 DDFRLFCGDLGNEVNDDVLTKAFSKYPSFNMARVIRDKWTGKTRGYAFVSFANASDLAAA 86
+D+RLFCGDLGNEVNDDVL+KAFS++PSFNMARV+RDK TGKT+GY FVSF+N +DLA A
Sbjct: 125 NDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTKGYGFVSFSNPTDLAGA 184
Query: 87 LKEMNGKYVGNRPIKLRKSTWKNRIDYEALXXXXXXXXXXXXXXXXSILHK 137
+KEMNGKYVGNRPIKLRKS WK R D +AL SILHK
Sbjct: 185 IKEMNGKYVGNRPIKLRKSNWKERTDVDALERQKNHIQKKPKMPKKSILHK 235
>Os08g0520300 Similar to Oligouridylate binding protein
Length = 447
Score = 82.4 bits (202), Expect = 8e-17, Method: Composition-based stats.
Identities = 39/85 (45%), Positives = 54/85 (63%)
Query: 25 STDDFRLFCGDLGNEVNDDVLTKAFSKYPSFNMARVIRDKWTGKTRGYAFVSFANASDLA 84
++ F +F GDL +EVND L FS YPS + ARV+ D TG++RGY FVSF N +
Sbjct: 154 TSGHFHIFVGDLSSEVNDATLYACFSAYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAE 213
Query: 85 AALKEMNGKYVGNRPIKLRKSTWKN 109
A+ EM GK++G+R I+ +T N
Sbjct: 214 TAITEMTGKWLGSRQIRCNWATKNN 238
>Os07g0615400 Similar to Oligouridylate binding protein
Length = 427
Score = 78.2 bits (191), Expect = 2e-15, Method: Composition-based stats.
Identities = 37/82 (45%), Positives = 54/82 (65%)
Query: 25 STDDFRLFCGDLGNEVNDDVLTKAFSKYPSFNMARVIRDKWTGKTRGYAFVSFANASDLA 84
+TD F +F GDL EV D L FS Y S + ARV+ D+ TG++RGY FVSF N D
Sbjct: 146 TTDHFNIFVGDLSPEVTDSALFAFFSGYSSCSDARVMWDQKTGRSRGYGFVSFRNQQDAQ 205
Query: 85 AALKEMNGKYVGNRPIKLRKST 106
+A+ ++NG+++G+R I+ +T
Sbjct: 206 SAINDLNGQWLGSRQIRCNWAT 227
>Os04g0449900 Similar to RNA Binding Protein 47
Length = 387
Score = 73.2 bits (178), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 55/89 (61%), Gaps = 1/89 (1%)
Query: 19 SDKFSPSTDDFRLFCGDLGNEVNDDVLTKAFS-KYPSFNMARVIRDKWTGKTRGYAFVSF 77
+K S D+ +F GDL +V D++L + F+ KY S A+VI D TG++RGY FV F
Sbjct: 148 GEKRSEVASDYSIFVGDLAADVTDEMLMELFANKYRSVKGAKVIIDANTGRSRGYGFVRF 207
Query: 78 ANASDLAAALKEMNGKYVGNRPIKLRKST 106
+ +D + A+ EMNG Y RPI++ +T
Sbjct: 208 GDDNDKSHAMTEMNGAYCSTRPIRIGPAT 236
>Os09g0462700 Similar to RNA Binding Protein 47
Length = 441
Score = 69.7 bits (169), Expect = 6e-13, Method: Composition-based stats.
Identities = 35/88 (39%), Positives = 53/88 (60%), Gaps = 1/88 (1%)
Query: 20 DKFSPSTDDFRLFCGDLGNEVNDDVLTKAFSK-YPSFNMARVIRDKWTGKTRGYAFVSFA 78
D+ S D +F GDL ++VND L + FSK Y S A+V+ D TG+++GY FV F
Sbjct: 199 DRRSDIASDHSIFVGDLASDVNDTTLLETFSKRYSSVKGAKVVIDANTGRSKGYGFVRFG 258
Query: 79 NASDLAAALKEMNGKYVGNRPIKLRKST 106
+ ++ A+ EMNG Y RP+++ +T
Sbjct: 259 DDNEKTHAMTEMNGVYCSTRPMRIGPAT 286
>Os02g0567900 Similar to RNA Binding Protein 47
Length = 257
Score = 68.6 bits (166), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 49/80 (61%), Gaps = 1/80 (1%)
Query: 28 DFRLFCGDLGNEVNDDVLTKAFSK-YPSFNMARVIRDKWTGKTRGYAFVSFANASDLAAA 86
D +F GDL +V D++L F+K Y S A+VI D TG++RGY FV F + +D A
Sbjct: 27 DHSIFVGDLAVDVTDEMLMDLFAKKYRSVKGAKVIIDANTGRSRGYGFVRFGDDNDKTHA 86
Query: 87 LKEMNGKYVGNRPIKLRKST 106
+ EMNG Y RPI++ +T
Sbjct: 87 MTEMNGAYCSTRPIRIGPAT 106
>Os04g0625800 Similar to RNA Binding Protein 45
Length = 425
Score = 68.6 bits (166), Expect = 2e-12, Method: Composition-based stats.
Identities = 31/78 (39%), Positives = 49/78 (62%), Gaps = 1/78 (1%)
Query: 26 TDDFRLFCGDLGNEVNDDVLTKAFS-KYPSFNMARVIRDKWTGKTRGYAFVSFANASDLA 84
T D+ +F GDL +V D +L + F YPS A+V+ DK T +++GY FV F + ++ A
Sbjct: 177 TPDYTIFVGDLAADVTDYLLQETFRVHYPSVKGAKVVTDKMTMRSKGYGFVKFGDPTEQA 236
Query: 85 AALKEMNGKYVGNRPIKL 102
A+ EMNG +RP+++
Sbjct: 237 RAMTEMNGMLCSSRPMRI 254
>Os03g0174100 Similar to RNA Binding Protein 45
Length = 416
Score = 67.0 bits (162), Expect = 3e-12, Method: Composition-based stats.
Identities = 35/93 (37%), Positives = 54/93 (58%), Gaps = 5/93 (5%)
Query: 28 DFRLFCGDLGNEVNDDVLTKAFS-KYPSFNMARVIRDKWTGKTRGYAFVSFANASDLAAA 86
D +F GDL +V D +L + F YPS A+V+ D TG+++GY FV FA+ ++ A
Sbjct: 108 DHSIFVGDLAPDVTDYLLQETFRVSYPSVKGAKVVTDPNTGRSKGYGFVKFADENEKNRA 167
Query: 87 LKEMNGKYVGNRPIKLR----KSTWKNRIDYEA 115
+ EMNG Y RP+++ K T +++ Y A
Sbjct: 168 MTEMNGMYCSTRPMRISAAIPKKTTGSQLQYGA 200
>Os03g0569900 Similar to RNA Binding Protein 45
Length = 402
Score = 66.6 bits (161), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 53/85 (62%), Gaps = 1/85 (1%)
Query: 28 DFRLFCGDLGNEVNDDVLTKAF-SKYPSFNMARVIRDKWTGKTRGYAFVSFANASDLAAA 86
D+ +F GDL ++V D +L F + Y S A+V+ D+ TG+++GY FV F + + A
Sbjct: 159 DYTIFVGDLASDVTDLILQDTFKAHYQSVKGAKVVFDRSTGRSKGYGFVKFGDLDEQTRA 218
Query: 87 LKEMNGKYVGNRPIKLRKSTWKNRI 111
+ EMNG+Y +RP+++ ++ K I
Sbjct: 219 MTEMNGQYCSSRPMRIGPASNKKNI 243
>Os01g0916600 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 150
Score = 65.9 bits (159), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 46/73 (63%)
Query: 30 RLFCGDLGNEVNDDVLTKAFSKYPSFNMARVIRDKWTGKTRGYAFVSFANASDLAAALKE 89
+LF G L NDD L +AF+ + ARVI D+ +G++RG+ FVSFAN D +A+
Sbjct: 38 KLFVGGLSWNTNDDSLKEAFTSFGDVTEARVINDRESGRSRGFGFVSFANGDDAKSAMDA 97
Query: 90 MNGKYVGNRPIKL 102
M+GK + R I++
Sbjct: 98 MDGKELEGRSIRV 110
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.135 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,003,605
Number of extensions: 146427
Number of successful extensions: 724
Number of sequences better than 1.0e-10: 11
Number of HSP's gapped: 724
Number of HSP's successfully gapped: 11
Length of query: 137
Length of database: 17,035,801
Length adjustment: 90
Effective length of query: 47
Effective length of database: 12,336,541
Effective search space: 579817427
Effective search space used: 579817427
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 150 (62.4 bits)