Os08g0520300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Oligouridylate binding protein.
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Os08g0520300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Oligouridylate binding protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 11.49 | 0.159 | 11.7 | 0.0259 | 0.437 | -0.27 | 0.0177 | -0.0656 | 0.152 | 11.7 | 1011 | 5185 | -- | -- |
| 11.5 | 0.158 | 11.7 | 0.0134 | 0.437 | -0.267 | 0.0174 | -- | 0.15 | 11.7 | 1011 | 5103 | -- | -- |
| 11.43 | 0.157 | 11.7 | 0.00728 | 0.439 | -0.262 | -- | -0.0841 | 0.152 | 11.7 | 1012 | 5880 | -- | -- |
| 11.45 | 0.158 | 11.7 | -0.00577 | 0.436 | -0.257 | -- | -- | 0.151 | 11.7 | 1012 | 5868 | -- | -- |
| 23.34 | 0.225 | 11.7 | -0.00561 | -- | -0.264 | -- | -0.0743 | 0.142 | -- | 1012 | 6045 | -- | -- |
| 13.16 | 0.17 | 11.7 | 0.0881 | 0.436 | -- | 0.0191 | -- | 0.198 | 11.6 | -- | -- | -- | -- |
| 13.16 | 0.17 | 11.7 | 0.0888 | 0.435 | -- | -- | -- | 0.198 | 11.6 | -- | -- | -- | -- |
| 23.36 | 0.225 | 11.7 | -0.0195 | -- | -0.254 | -- | -- | 0.142 | -- | 1012 | 6019 | -- | -- |
| 11.45 | 0.158 | 11.7 | -- | 0.435 | -0.255 | -- | -- | 0.148 | 11.7 | 1012 | 5871 | -- | -- |
| 25.08 | 0.234 | 11.7 | 0.0767 | -- | -- | -- | -- | 0.193 | -- | -- | -- | -- | -- |
| 13.37 | 0.171 | 11.7 | -- | 0.434 | -- | -- | -- | 0.189 | 11.6 | -- | -- | -- | -- |
| 23.36 | 0.225 | 11.7 | -- | -- | -0.248 | -- | -- | 0.145 | -- | 1012 | 6007 | -- | -- |
| 25.23 | 0.234 | 11.7 | -- | -- | -- | -- | -- | 0.185 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 11.01 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 16 |
| 2 | 11.02 | temperature | 25 | 90 | < th | dose dependent | rect. | 13 | 10 |
| 3 | 11.02 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 18 |
| 6 | 11.08 | temperature | 30 | 90 | < th | dose dependent | rect. | 17 | 14 |
| 63 | 11.25 | temperature | 15 | 270 | > th | dose dependent | rect. | 19 | 7 |
| 87 | 11.28 | temperature | 10 | 270 | > th | dose dependent | rect. | 11 | 13 |
| 91 | 11.29 | temperature | 25 | 10 | < th | dose dependent | sin | 16 | NA |
| 108 | 11.31 | temperature | 20 | 30 | > th | dose independent | rect. | 20 | 21 |
| 131 | 11.33 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 11 |
| 141 | 11.34 | temperature | 25 | 270 | < th | dose independent | rect. | 13 | 8 |
| 158 | 11.35 | temperature | 15 | 270 | > th | dose dependent | rect. | 20 | 4 |
| 195 | 11.37 | atmosphere | 1010 | 4320 | > th | dose dependent | rect. | 22 | 1 |
| 237 | 11.39 | temperature | 15 | 10 | > th | dose dependent | rect. | 14 | 12 |
| 247 | 11.40 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 2 |
| 259 | 11.40 | temperature | 10 | 90 | > th | dose dependent | rect. | 20 | 21 |
| 275 | 11.42 | temperature | 25 | 90 | < th | dose independent | rect. | 15 | 8 |
| 299 | 11.43 | temperature | 20 | 720 | > th | dose dependent | rect. | 13 | 2 |
| 326 | 11.44 | temperature | 25 | 10 | < th | dose dependent | rect. | 13 | 11 |
| 341 | 11.45 | radiation | 1 | 10 | < th | dose dependent | sin | 22 | NA |
| 345 | 11.45 | atmosphere | 1015 | 4320 | > th | dose dependent | rect. | 18 | 3 |
| 368 | 11.46 | temperature | 20 | 4320 | < th | dose dependent | rect. | 1 | 1 |
| 418 | 11.48 | temperature | 30 | 720 | < th | dose dependent | sin | 20 | NA |
| 448 | 11.49 | temperature | 20 | 4320 | < th | dose dependent | rect. | 23 | 3 |
| 474 | 11.50 | temperature | 25 | 720 | < th | dose dependent | rect. | 19 | 1 |
| 511 | 11.51 | radiation | 1 | 30 | < th | dose independent | sin | 22 | NA |
| 512 | 11.51 | temperature | 25 | 270 | > th | dose independent | rect. | 11 | 13 |
| 515 | 11.51 | atmosphere | 1010 | 4320 | > th | dose dependent | sin | 12 | NA |
| 562 | 11.52 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 5 |
| 596 | 11.52 | temperature | 10 | 270 | > th | dose dependent | rect. | 18 | 22 |
| 598 | 11.53 | atmosphere | 1010 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 599 | 11.53 | atmosphere | 1010 | 4320 | < th | dose independent | rect. | 22 | 1 |
| 605 | 11.53 | humidity | 70 | 43200 | > th | dose independent | rect. | 22 | 11 |
| 621 | 11.53 | temperature | 10 | 270 | > th | dose dependent | rect. | 19 | 11 |
| 767 | 11.56 | temperature | 25 | 10 | < th | dose independent | rect. | 13 | 9 |
| 770 | 11.56 | humidity | 60 | 43200 | < th | dose independent | rect. | 22 | 12 |
| 775 | 11.56 | humidity | 90 | 14400 | < th | dose dependent | rect. | 3 | 2 |
| 777 | 11.56 | temperature | 30 | 720 | < th | dose dependent | rect. | 12 | 3 |
| 860 | 11.57 | temperature | 25 | 720 | < th | dose independent | rect. | 9 | 11 |
| 869 | 11.57 | humidity | 60 | 43200 | < th | dose dependent | sin | 8 | NA |
| 871 | 11.57 | atmosphere | 1010 | 4320 | > th | dose dependent | no | NA | NA |
| 872 | 11.57 | temperature | 30 | 720 | < th | dose dependent | rect. | 13 | 1 |
| 899 | 11.57 | humidity | 60 | 14400 | < th | dose dependent | rect. | 19 | 14 |
| 904 | 11.57 | humidity | 60 | 43200 | < th | dose dependent | rect. | 21 | 17 |
| 914 | 11.57 | atmosphere | 1010 | 4320 | > th | dose dependent | rect. | 6 | 19 |
| 947 | 11.57 | atmosphere | 1010 | 4320 | > th | dose dependent | rect. | 1 | 23 |
| 967 | 11.58 | temperature | 30 | 720 | > th | dose independent | rect. | 13 | 2 |
| 981 | 11.58 | temperature | 25 | 90 | > th | dose independent | rect. | 13 | 12 |