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Os04g0591000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : RNA-binding region RNP-1 (RNA recognition motif) domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.2 (0.0292) R2 : 0.534
β1 : -1.38 (0.107) R2dD : 0.176 R2D : 0.0665
β2 : 1.22 (0.0726) R2dC : 0.292 R2C : 0.258
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.664 (0.0623) R2dN8 : 0.156 R2N8 : 0.0662
σ : 0.549
deviance : 137.27
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_____
C
peak time of C : 20.9
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
118.83 0.512 12.2 -1.36 1.4 1.07 0.779 2.33 -0.713 21.9 21.43 156 -- --
125.76 0.522 12.2 -1.34 1.39 0.924 0.387 -- -0.735 21.7 21.55 162 -- --
120.7 0.512 12.2 -1.37 1.38 1.03 -- 1.9 -0.701 21.8 23.12 156 -- --
125.41 0.522 12.2 -1.36 1.37 0.867 -- -- -0.706 21.7 20.86 161 -- --
155.25 0.58 12.2 -1.47 -- 1.4 -- 0.137 -0.858 -- -46.01 953 -- --
137.05 0.549 12.2 -1.37 1.22 -- 0.253 -- -0.664 20.9 -- -- -- --
137.27 0.549 12.2 -1.38 1.22 -- -- -- -0.664 20.9 -- -- -- --
155.33 0.58 12.2 -1.5 -- 1.39 -- -- -0.853 -- -36.43 955 -- --
174.1 0.615 12.2 -- 1.37 0.945 -- -- -0.552 21.6 25.02 158 -- --
222.82 0.698 12.2 -1.38 -- -- -- -- -0.672 -- -- -- -- --
187.21 0.64 12.2 -- 1.23 -- -- -- -0.51 20.8 -- -- -- --
214.41 0.682 12.2 -- -- 1.29 -- -- -0.67 -- -32.51 940 -- --
272.79 0.771 12.1 -- -- -- -- -- -0.52 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 110.91 atmosphere 1000 90 > th dose independent rect. 5 18
22 116.05 atmosphere 1000 90 > th dose independent rect. 3 23
23 116.09 atmosphere 995 90 > th dose dependent rect. 5 17
27 116.29 atmosphere 1015 90 < th dose dependent rect. 9 8
32 116.79 atmosphere 995 270 > th dose dependent rect. 3 17
34 116.81 atmosphere 1015 90 < th dose dependent rect. 9 20
42 117.18 atmosphere 1000 30 > th dose independent rect. 7 23
47 117.26 atmosphere 1015 10 < th dose dependent rect. 9 21
56 117.58 atmosphere 1000 10 < th dose independent rect. 10 20
57 117.60 radiation 40 270 < th dose dependent rect. 3 10
64 117.68 atmosphere 1000 90 < th dose independent rect. 9 20
88 117.99 atmosphere 1000 10 > th dose independent rect. 1 23
91 118.03 atmosphere 1000 10 < th dose independent sin 20 NA
92 118.04 atmosphere 1005 270 < th dose dependent rect. 8 7
96 118.08 atmosphere 1015 10 < th dose dependent rect. 9 8
102 118.12 atmosphere 1000 30 > th dose independent sin 21 NA
128 118.30 atmosphere 1000 90 > th dose independent rect. 11 23
140 118.43 radiation 30 270 < th dose independent rect. 3 8
146 118.47 radiation 20 90 > th dose dependent rect. 13 23
153 118.52 radiation 30 270 < th dose independent rect. 2 11
189 118.80 radiation 30 90 < th dose independent rect. 5 6
200 118.88 atmosphere 1000 90 < th dose independent rect. 9 14
201 118.89 radiation 20 270 > th dose dependent rect. 8 4
204 118.91 radiation 30 90 < th dose independent rect. 5 18
207 118.94 atmosphere 1000 10 < th dose independent rect. 10 10
214 118.96 atmosphere 1000 10 < th dose independent rect. 10 8
223 118.99 atmosphere 1005 90 < th dose dependent rect. 9 20
226 119.02 atmosphere 1000 10 < th dose independent rect. 10 6
251 119.19 atmosphere 1000 90 < th dose independent rect. 9 8
253 119.19 atmosphere 1005 10 < th dose dependent rect. 9 21
262 119.24 radiation 30 10 < th dose independent rect. 6 16
277 119.30 radiation 20 270 > th dose dependent sin 7 NA
290 119.37 atmosphere 1000 270 > th dose independent rect. 11 11
314 119.46 wind 9 14400 > th dose dependent rect. 13 1
328 119.51 temperature 15 270 > th dose dependent rect. 22 16
370 119.61 atmosphere 1005 10 < th dose dependent rect. 9 19
390 119.70 atmosphere 1000 30 > th dose independent rect. 13 23
396 119.72 atmosphere 1005 10 < th dose dependent sin 21 NA
406 119.75 atmosphere 1000 10 < th dose independent rect. 1 23
409 119.76 radiation 30 10 < th dose independent rect. 5 10
427 119.82 atmosphere 1000 10 < th dose independent rect. 23 23
447 119.87 atmosphere 1000 10 > th dose independent rect. 11 23
448 119.87 atmosphere 1000 10 < th dose independent rect. 5 23
456 119.88 atmosphere 1000 30 > th dose independent rect. 15 23
457 119.88 atmosphere 1000 10 < th dose independent rect. 19 23
466 119.90 atmosphere 1000 10 > th dose independent no NA NA
468 119.90 atmosphere 1000 10 < th dose independent no NA NA
474 119.91 atmosphere 1000 30 > th dose independent rect. 21 23
475 119.91 atmosphere 1000 10 < th dose independent rect. 3 23
516 119.99 atmosphere 1005 90 < th dose dependent rect. 9 16
533 120.03 radiation 30 270 < th dose independent rect. 3 18
550 120.06 radiation 40 270 < th dose independent rect. 9 23
554 120.07 atmosphere 1000 10 < th dose independent rect. 17 23
555 120.07 atmosphere 1010 90 < th dose dependent rect. 23 18
590 120.17 atmosphere 1000 90 > th dose independent rect. 23 23
593 120.18 radiation 30 90 < th dose independent rect. 5 8
602 120.20 atmosphere 1000 10 < th dose independent rect. 15 23
607 120.21 atmosphere 1000 10 > th dose independent rect. 17 23
609 120.21 atmosphere 1000 30 < th dose independent rect. 13 23
741 120.45 atmosphere 1005 90 < th dose dependent rect. 9 14
756 120.48 radiation 20 10 > th dose dependent rect. 13 23
775 120.52 radiation 30 270 < th dose independent rect. 1 22
776 120.52 atmosphere 1000 30 > th dose independent rect. 9 23
791 120.55 radiation 30 270 < th dose independent rect. 3 15
801 120.57 radiation 40 90 < th dose dependent rect. 5 8
805 120.57 atmosphere 1010 10 < th dose dependent rect. 22 20
815 120.60 radiation 30 270 < th dose independent rect. 2 20
857 120.70 atmosphere 1005 10 < th dose dependent rect. 9 15
902 120.79 radiation 40 90 < th dose dependent rect. 5 6
908 120.80 atmosphere 1000 10 > th dose independent rect. 12 21
959 120.90 radiation 40 90 < th dose dependent rect. 5 18
997 120.99 radiation 30 270 > th dose independent rect. 8 4