BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0591000 Os04g0591000|AK072902
(291 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0591000 RNA-binding region RNP-1 (RNA recognition moti... 311 4e-85
Os08g0483200 RNA-binding region RNP-1 (RNA recognition moti... 79 3e-15
Os08g0557100 Similar to Nucleic acid-binding protein precursor 70 1e-12
Os02g0815200 Similar to 29 kDa ribonucleoprotein, chloropla... 68 7e-12
>Os04g0591000 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 291
Score = 311 bits (796), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 167/248 (67%), Positives = 167/248 (67%)
Query: 44 IDIRRLPXXXXXXXXXXXXXXXXXXXXXXXXXXXKRRKLYVANIPWSFPAPEIEKLFAQC 103
IDIRRLP KRRKLYVANIPWSFPAPEIEKLFAQC
Sbjct: 44 IDIRRLPAAAVAASSPPEAQAVEDGEEEEEEGGEKRRKLYVANIPWSFPAPEIEKLFAQC 103
Query: 104 GAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEKLNSLDVMGRTIRVEFSKSFRKXXX 163
GA EKLNSLDVMGRTIRVEFSKSFRK
Sbjct: 104 GAVKDVEVIKGKDGKKKGFAFVTMATAEEAAAAVEKLNSLDVMGRTIRVEFSKSFRKPAP 163
Query: 164 XXXXGTILERHKLYVSNLPWKARAPNMKEFFSKFNPLSAKVVFDSPSGKSAGYGFVSFGT 223
GTILERHKLYVSNLPWKARAPNMKEFFSKFNPLSAKVVFDSPSGKSAGYGFVSFGT
Sbjct: 164 PPPPGTILERHKLYVSNLPWKARAPNMKEFFSKFNPLSAKVVFDSPSGKSAGYGFVSFGT 223
Query: 224 KXXXXXXLTELDGKELMGRPVRLRWRQXXXXXXXXXKADGEIEDANVDGEAEGVTDNGTK 283
K LTELDGKELMGRPVRLRWRQ KADGEIEDANVDGEAEGVTDNGTK
Sbjct: 224 KEEAEAALTELDGKELMGRPVRLRWRQSVDDSDDSVKADGEIEDANVDGEAEGVTDNGTK 283
Query: 284 DHGEDKQE 291
DHGEDKQE
Sbjct: 284 DHGEDKQE 291
>Os08g0483200 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 269
Score = 79.3 bits (194), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 82/173 (47%), Gaps = 4/173 (2%)
Query: 79 RRKLYVANIPWSFPAPEIEKLFAQCGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXE 138
R +L NIPW A ++ LF + G+
Sbjct: 72 RTRLIAQNIPWDCTADDMRALFGKHGSVVDVELSMYNSTRNRGLAFVTMGSEEEALSALN 131
Query: 139 KLNSLDVMGRTIRVEFSKSFRKXXXXXXXGTILERHKLYVSNLPWKARAPNMKEFFSKFN 198
LNS + RTI+V+F++S +K + +H ++V NL W+ R+ +++E F+
Sbjct: 132 HLNSTTLNDRTIKVDFTRSRKKQYVVPSAP--MPKHSVFVGNLTWRVRSRHLRELFASTP 189
Query: 199 PL-SAKVVFDSPSGK-SAGYGFVSFGTKXXXXXXLTELDGKELMGRPVRLRWR 249
+ S +VVF + S + SAGYGFVSF +K ++ +G +LMGR + + ++
Sbjct: 190 GVQSVEVVFHTTSPRRSAGYGFVSFSSKEAAEAAISTFNGTKLMGRSINVMFK 242
>Os08g0557100 Similar to Nucleic acid-binding protein precursor
Length = 194
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 76/176 (43%), Gaps = 19/176 (10%)
Query: 81 KLYVANIPWSFPAPEIEKLFAQCGAXXXXXXXXXXXXXXXXXXX-XXXXXXXXXXXXXEK 139
K+YV N+P+ + + +LF Q G E
Sbjct: 17 KVYVGNLPYDVDSEGLAQLFEQAGVVEVAEVIYNRETGQSRGFGFVTMSTIEEADKAIEM 76
Query: 140 LNSLDVMGRTIRVEFSKSFRKXXXXXXXGTILER--------HKLYVSNLPWKARAPNMK 191
LN D+ GR + V + G+ +ER + YV NLPW+ +
Sbjct: 77 LNRYDINGRLLNVNRAAP---------RGSRVERPPRQFAPAFRAYVGNLPWQVDDSRLL 127
Query: 192 EFFSKFNPL-SAKVVFDSPSGKSAGYGFVSFGTKXXXXXXLTELDGKELMGRPVRL 246
+ FS+ + +A VV+D SG+S G+GFVS +K ++ LDG+EL GRP+R+
Sbjct: 128 QLFSEHGEVVNASVVYDRESGRSRGFGFVSMASKEELDDAISALDGQELDGRPLRV 183
>Os02g0815200 Similar to 29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29)
Length = 316
Score = 68.2 bits (165), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 54/101 (53%), Gaps = 5/101 (4%)
Query: 147 GRTIRVEFSKSFRKXXXXXXXGTILERHKLYVSNLPWKARAPNMKEFFSKF-NPLSAKVV 205
GRT+RV F+ + HKL+V NL W + + E F K N + A+V+
Sbjct: 213 GRTMRVNFADKPKPKLPLYPE----TEHKLFVGNLSWTVTSEMLTEMFQKCGNVVGARVL 268
Query: 206 FDSPSGKSAGYGFVSFGTKXXXXXXLTELDGKELMGRPVRL 246
+D +G+S GYGFV + TK L+ L+G EL GR +R+
Sbjct: 269 YDGETGRSRGYGFVCYSTKEEMDEALSSLNGTELEGREIRV 309
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.135 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,840,989
Number of extensions: 175508
Number of successful extensions: 667
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 669
Number of HSP's successfully gapped: 4
Length of query: 291
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 191
Effective length of database: 11,814,401
Effective search space: 2256550591
Effective search space used: 2256550591
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 155 (64.3 bits)