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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0483200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : RNA-binding region RNP-1 (RNA recognition motif) domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.97 (0.0328) R2 : 0.905
β1 : -- (--) R2dD : -- R2D : --
β2 : 6.08 (0.0951) R2dC : 1.1 R2C : 0.811
β3 : -4.93 (0.276) R2dE : 0.0863 R2E : -0.203
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.3 (0.0694) R2dN8 : 0.00506 R2N8 : 0.0098
σ : 0.616
deviance : 174.73
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_____
C
peak time of C : 16
E
wheather : temperature
threshold : 14.64
memory length : 271
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 24
open length of G : 23.1

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
165.88 0.605 6.98 0.154 6.08 -6.43 2.02 -4.48 -0.289 16 14.7 275 23.9 23.1
170.33 0.608 6.97 0.135 6.08 -4.87 1.17 -- -0.287 16 14.63 273 24 23.1
175.08 0.616 6.97 0.213 6.03 -5.88 -- -1.98 -0.28 16.1 14.8 273 23.9 23.1
174.17 0.615 6.97 0.148 6.09 -4.95 -- -- -0.286 16 14.63 273 23.9 23.1
1773.55 1.96 6.95 0.198 -- -5.31 -- -2.44 -0.464 -- 14.9 1403 0.0121 24
259.01 0.754 7.02 -0.0565 5.37 -- 1.69 -- -0.453 16.5 -- -- -- --
266.71 0.765 7.01 -0.0449 5.38 -- -- -- -0.444 16.5 -- -- -- --
1771.99 1.96 6.94 0.154 -- -3.39 -- -- -0.468 -- 15.7 1390 23.9 24
174.73 0.616 6.97 -- 6.08 -4.93 -- -- -0.3 16 14.64 271 24 23.1
1813.9 1.99 6.97 -0.254 -- -- -- -- -0.585 -- -- -- -- --
266.76 0.764 7.01 -- 5.38 -- -- -- -0.439 16.5 -- -- -- --
1772.55 1.96 6.95 -- -- -3.26 -- -- -0.487 -- 15.73 1384 0.491 24
1815.6 1.99 6.97 -- -- -- -- -- -0.557 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 167.51 temperature 30.0 270 < th dose dependent rect. 21 4
2 168.29 temperature 30.0 90 < th dose dependent rect. 21 6
3 168.62 temperature 30.0 270 < th dose dependent rect. 23 1
4 169.14 temperature 30.0 270 < th dose dependent rect. 19 7
5 169.82 temperature 15.0 720 > th dose dependent rect. 18 4
7 170.42 temperature 15.0 270 > th dose independent rect. 24 23
12 172.93 temperature 30.0 10 < th dose dependent rect. 23 5
17 174.55 temperature 10.0 270 > th dose dependent rect. 17 13
21 175.29 temperature 15.0 270 > th dose independent rect. 17 13
30 176.34 temperature 20.0 90 > th dose independent rect. 17 15
32 176.51 temperature 20.0 270 > th dose independent rect. 15 15
54 179.49 temperature 20.0 30 > th dose independent rect. 15 17
71 181.01 temperature 15.0 270 > th dose independent rect. 5 22
101 182.50 temperature 25.0 10 < th dose dependent rect. 18 10
118 183.24 temperature 15.0 10 > th dose dependent rect. 20 12
137 184.07 temperature 20.0 30 > th dose independent rect. 20 12
166 185.24 atmosphere 1015.0 1440 < th dose independent rect. 3 6
178 185.51 temperature 15.0 10 > th dose dependent rect. 18 14
190 185.86 temperature 15.0 270 > th dose independent rect. 11 10
201 186.14 atmosphere 1010.0 270 < th dose independent rect. 15 15
203 186.23 temperature 20.0 720 > th dose independent rect. 18 4
224 186.75 temperature 25.0 10 < th dose dependent sin 12 NA
322 188.43 temperature 20.0 90 < th dose dependent rect. 12 16
328 188.54 precipitation 0.1 270 < th dose independent rect. 5 22
331 188.54 precipitation 0.1 270 < th dose dependent rect. 5 22
357 188.87 temperature 15.0 1440 > th dose independent rect. 4 5
361 188.93 temperature 20.0 10 < th dose dependent rect. 20 14
365 188.97 temperature 20.0 10 < th dose dependent rect. 12 16
387 189.31 wind 9.0 270 < th dose dependent rect. 3 2
502 190.21 precipitation 0.1 270 < th dose independent rect. 3 2
503 190.21 precipitation 0.1 270 < th dose dependent rect. 3 2
512 190.26 wind 9.0 270 < th dose independent rect. 5 22
513 190.26 temperature 10.0 270 > th dose dependent rect. 3 2
514 190.28 humidity 50.0 270 > th dose dependent rect. 3 2
575 190.88 wind 9.0 90 < th dose dependent rect. 3 5
586 190.95 precipitation 0.1 270 < th dose independent rect. 6 20
587 190.95 precipitation 0.1 270 < th dose dependent rect. 6 20
601 191.17 temperature 15.0 10 > th dose dependent sin 11 NA
615 191.34 wind 9.0 270 < th dose independent rect. 3 2
616 191.34 temperature 10.0 270 > th dose independent rect. 3 2
618 191.34 temperature 30.0 270 < th dose independent rect. 3 2
619 191.34 humidity 50.0 270 > th dose independent rect. 3 2
622 191.34 atmosphere 995.0 270 > th dose independent rect. 3 2
623 191.34 atmosphere 1010.0 270 < th dose independent rect. 3 2
625 191.34 radiation 20.0 270 < th dose independent rect. 3 2
632 191.36 radiation 1.0 270 < th dose independent rect. 3 2
634 191.36 radiation 40.0 270 < th dose dependent rect. 3 2
647 191.46 temperature 10.0 270 > th dose dependent rect. 2 4
661 191.59 precipitation 0.1 90 < th dose independent rect. 8 19
663 191.59 precipitation 0.1 90 < th dose dependent rect. 8 19
718 192.36 temperature 20.0 10 < th dose dependent rect. 12 22
733 192.53 precipitation 0.1 90 < th dose independent rect. 3 5
735 192.53 precipitation 0.1 90 < th dose dependent rect. 3 5
739 192.56 temperature 10.0 10 > th dose dependent rect. 3 5
743 192.62 humidity 50.0 270 > th dose dependent rect. 23 1
745 192.64 humidity 50.0 14400 > th dose independent rect. 4 5
768 192.83 atmosphere 1010.0 90 < th dose independent rect. 3 5
787 193.00 wind 9.0 90 < th dose independent rect. 8 19
797 193.08 atmosphere 995.0 270 > th dose dependent rect. 23 1
802 193.12 wind 9.0 270 < th dose independent rect. 6 20
834 193.41 humidity 50.0 270 > th dose dependent rect. 2 4
835 193.43 wind 9.0 90 < th dose independent rect. 3 5
836 193.43 temperature 10.0 90 > th dose independent rect. 3 5
838 193.43 temperature 30.0 90 < th dose independent rect. 3 5
839 193.43 humidity 50.0 90 > th dose independent rect. 3 5
841 193.43 atmosphere 995.0 90 > th dose independent rect. 3 5
843 193.43 temperature 10.0 90 > th dose independent rect. 8 19
849 193.48 radiation 40.0 90 < th dose independent rect. 3 5
911 193.85 wind 7.0 270 < th dose independent rect. 23 1
919 193.89 atmosphere 1010.0 270 < th dose independent rect. 11 10
971 194.11 radiation 40.0 270 < th dose dependent rect. 2 4
987 194.19 temperature 10.0 270 > th dose independent rect. 23 1
988 194.19 temperature 30.0 270 < th dose independent rect. 23 1
989 194.19 humidity 50.0 270 > th dose independent rect. 23 1
992 194.19 atmosphere 995.0 270 > th dose independent rect. 23 1
993 194.19 radiation 1.0 270 < th dose independent rect. 23 1
999 194.19 radiation 1.0 270 < th dose dependent rect. 23 1