Os08g0557100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Nucleic acid-binding protein precursor.
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Os08g0557100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Nucleic acid-binding protein precursor.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = precipitation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 58.34 | 0.359 | 13.6 | 0.451 | 0.947 | -0.363 | -1.08 | -2.43 | -0.513 | 19.6 | -8.461e-05 | 4683 | -- | -- |
| 58.55 | 0.356 | 13.6 | 0.604 | 0.97 | -0.854 | -1.09 | -- | -0.556 | 19.4 | 0.4748 | 19571 | -- | -- |
| 61.58 | 0.365 | 13.6 | 0.463 | 0.957 | -0.354 | -- | -2.4 | -0.515 | 19.5 | 0.01344 | 4682 | -- | -- |
| 61.34 | 0.365 | 13.6 | 0.574 | 0.963 | -0.871 | -- | -- | -0.556 | 19.4 | 0.468 | 19570 | -- | -- |
| 109.02 | 0.486 | 13.6 | 0.479 | -- | -0.424 | -- | -2.29 | -0.533 | -- | -0.2019 | 5412 | -- | -- |
| 74.62 | 0.405 | 13.6 | 0.209 | 0.945 | -- | -1.06 | -- | -0.46 | 19.6 | -- | -- | -- | -- |
| 77.65 | 0.413 | 13.6 | 0.236 | 0.948 | -- | -- | -- | -0.461 | 19.4 | -- | -- | -- | -- |
| 109.67 | 0.488 | 13.6 | 0.564 | -- | -0.871 | -- | -- | -0.599 | -- | 0.4583 | 19564 | -- | -- |
| 66.78 | 0.381 | 13.6 | -- | 0.951 | -0.678 | -- | -- | -0.641 | 19.4 | 0.2702 | 16102 | -- | -- |
| 125.57 | 0.524 | 13.5 | 0.221 | -- | -- | -- | -- | -0.476 | -- | -- | -- | -- | -- |
| 79.12 | 0.416 | 13.6 | -- | 0.946 | -- | -- | -- | -0.487 | 19.4 | -- | -- | -- | -- |
| 114.48 | 0.498 | 13.6 | -- | -- | -0.698 | -- | -- | -0.653 | -- | 0.3146 | 16648 | -- | -- |
| 126.85 | 0.526 | 13.5 | -- | -- | -- | -- | -- | -0.5 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 55.06 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 8 | 21 |
| 2 | 55.07 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 7 | 22 |
| 9 | 56.63 | precipitation | 0.1 | 4320 | > th | dose dependent | sin | 3 | NA |
| 12 | 56.72 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 1 | 19 |
| 13 | 56.72 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 1 | 19 |
| 14 | 56.75 | precipitation | 0.1 | 4320 | < th | dose independent | sin | 2 | NA |
| 16 | 56.75 | precipitation | 0.1 | 4320 | < th | dose dependent | sin | 2 | NA |
| 18 | 56.78 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 1 | 19 |
| 21 | 56.81 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 7 | 22 |
| 24 | 56.81 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 7 | 22 |
| 28 | 56.85 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 12 | 8 |
| 30 | 56.85 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 12 | 8 |
| 32 | 56.86 | precipitation | 0.1 | 4320 | > th | dose independent | sin | 2 | NA |
| 34 | 56.88 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 13 | 7 |
| 45 | 57.02 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 3 |
| 46 | 57.03 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 3 |
| 48 | 57.03 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 3 |
| 55 | 57.07 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 13 | 7 |
| 66 | 57.16 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 3 | 17 |
| 88 | 57.22 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 7 | 13 |
| 90 | 57.23 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 3 | 15 |
| 92 | 57.23 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 3 | 15 |
| 135 | 57.35 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 23 | 21 |
| 148 | 57.40 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 1 | 19 |
| 171 | 57.49 | precipitation | 0.1 | 14400 | < th | dose independent | sin | 22 | NA |
| 173 | 57.49 | precipitation | 0.1 | 14400 | < th | dose dependent | sin | 22 | NA |
| 181 | 57.55 | precipitation | 0.1 | 14400 | > th | dose independent | sin | 22 | NA |
| 218 | 57.67 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 3 | 14 |
| 221 | 57.69 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 13 | 4 |
| 227 | 57.71 | radiation | 1.0 | 270 | < th | dose independent | rect. | 3 | 15 |
| 288 | 57.89 | wind | 9.0 | 90 | < th | dose independent | rect. | 7 | 22 |
| 306 | 57.95 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 323 | 58.00 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 3 | 5 |
| 422 | 58.22 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 5 | 2 |
| 448 | 58.28 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 456 | 58.28 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 467 | 58.31 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 7 | 20 |
| 468 | 58.31 | radiation | 30.0 | 270 | < th | dose dependent | rect. | 15 | 16 |
| 471 | 58.31 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 7 | 20 |
| 477 | 58.32 | wind | 1.0 | 270 | > th | dose independent | rect. | 7 | 20 |
| 481 | 58.33 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 6 | 11 |
| 502 | 58.37 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 3 | 16 |
| 516 | 58.40 | radiation | 30.0 | 90 | < th | dose dependent | rect. | 5 | 3 |
| 521 | 58.41 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 4 | 14 |
| 522 | 58.42 | humidity | 80.0 | 90 | > th | dose independent | rect. | 5 | 4 |
| 524 | 58.42 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 13 | 18 |
| 529 | 58.43 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 13 | 19 |
| 546 | 58.45 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 13 | 15 |
| 548 | 58.45 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 13 | 17 |
| 550 | 58.46 | radiation | 10.0 | 270 | < th | dose independent | rect. | 3 | 4 |
| 553 | 58.46 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 16 | 1 |
| 560 | 58.47 | temperature | 20.0 | 90 | > th | dose independent | rect. | 5 | 2 |
| 597 | 58.51 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 9 | 19 |
| 598 | 58.51 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 9 | 21 |
| 600 | 58.51 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 9 | 23 |
| 601 | 58.52 | radiation | 10.0 | 90 | < th | dose independent | rect. | 5 | 3 |
| 622 | 58.53 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 7 | 21 |
| 626 | 58.53 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 5 | 23 |
| 650 | 58.56 | wind | 5.0 | 90 | < th | dose independent | rect. | 5 | 2 |
| 662 | 58.57 | temperature | 10.0 | 90 | > th | dose independent | rect. | 5 | 2 |
| 664 | 58.57 | temperature | 30.0 | 90 | < th | dose independent | rect. | 5 | 2 |
| 665 | 58.57 | humidity | 50.0 | 90 | > th | dose independent | rect. | 5 | 2 |
| 667 | 58.57 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 5 | 2 |
| 668 | 58.57 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 5 | 2 |
| 669 | 58.57 | radiation | 40.0 | 90 | < th | dose independent | rect. | 5 | 2 |
| 673 | 58.57 | temperature | 10.0 | 90 | > th | dose independent | rect. | 7 | 22 |
| 674 | 58.57 | precipitation | 0.1 | 14400 | > th | dose dependent | no | NA | NA |
| 675 | 58.57 | atmosphere | 995.0 | 90 | > th | dose dependent | rect. | 5 | 2 |
| 701 | 58.59 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 3 | 8 |
| 708 | 58.59 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 15 | 23 |
| 726 | 58.61 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 13 | 13 |
| 749 | 58.63 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 5 | 2 |
| 754 | 58.63 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 5 | 2 |
| 785 | 58.66 | radiation | 1.0 | 270 | < th | dose independent | rect. | 3 | 11 |
| 830 | 58.70 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 3 | 4 |
| 854 | 58.72 | humidity | 70.0 | 90 | > th | dose independent | rect. | 13 | 19 |
| 863 | 58.72 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 19 | 23 |
| 970 | 58.87 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 3 | 11 |
| 973 | 58.88 | radiation | 1.0 | 270 | < th | dose independent | sin | 1 | NA |
| 995 | 58.93 | wind | 7.0 | 270 | < th | dose independent | rect. | 7 | 20 |
| 1000 | 58.93 | humidity | 70.0 | 90 | > th | dose dependent | rect. | 5 | 18 |