Os03g0376600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to 29 kDa ribonucleoprotein, chloroplast precursor (RNA-binding protein cp29).
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Os03g0376600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to 29 kDa ribonucleoprotein, chloroplast precursor (RNA-binding protein cp29).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 158.69 | 0.592 | 11.6 | 1.63 | 3.83 | 2.38 | -0.303 | -0.0268 | -0.432 | 18.1 | 21.67 | 29 | -- | -- |
| 158.63 | 0.591 | 11.6 | 1.62 | 3.82 | 2.36 | -0.284 | -- | -0.432 | 18.1 | 21.67 | 29 | -- | -- |
| 158.83 | 0.591 | 11.6 | 1.63 | 3.82 | 2.36 | -- | -0.0217 | -0.433 | 18.1 | 21.67 | 29 | -- | -- |
| 158.83 | 0.591 | 11.6 | 1.62 | 3.82 | 2.37 | -- | -- | -0.433 | 18.1 | 21.67 | 29 | -- | -- |
| 910.12 | 1.41 | 11.5 | 1.52 | -- | 1.67 | -- | -1.44 | -0.563 | -- | 21.2 | 14 | -- | -- |
| 212.28 | 0.683 | 11.6 | 1.2 | 3.77 | -- | -0.46 | -- | -0.661 | 18.4 | -- | -- | -- | -- |
| 212.8 | 0.683 | 11.6 | 1.2 | 3.76 | -- | -- | -- | -0.663 | 18.4 | -- | -- | -- | -- |
| 912.13 | 1.41 | 11.5 | 1.44 | -- | 1.99 | -- | -- | -0.575 | -- | 21.2 | 14 | -- | -- |
| 222.84 | 0.699 | 11.6 | -- | 3.78 | 1.64 | -- | -- | -0.67 | 18.2 | 21.67 | 29 | -- | -- |
| 948.69 | 1.44 | 11.5 | 1.11 | -- | -- | -- | -- | -0.742 | -- | -- | -- | -- | -- |
| 250.98 | 0.741 | 11.6 | -- | 3.75 | -- | -- | -- | -0.797 | 18.4 | -- | -- | -- | -- |
| 961.92 | 1.45 | 11.5 | -- | -- | 1.2 | -- | -- | -0.754 | -- | 22.48 | 2 | -- | -- |
| 980.94 | 1.46 | 11.6 | -- | -- | -- | -- | -- | -0.865 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 149.20 | temperature | 25 | 10 | < th | dose dependent | rect. | 22 | 9 |
| 3 | 149.55 | temperature | 20 | 90 | > th | dose independent | rect. | 19 | 13 |
| 6 | 149.95 | temperature | 20 | 30 | > th | dose independent | sin | 8 | NA |
| 12 | 150.58 | temperature | 25 | 10 | < th | dose dependent | sin | 9 | NA |
| 13 | 150.63 | temperature | 20 | 30 | < th | dose independent | sin | 8 | NA |
| 16 | 150.81 | temperature | 20 | 90 | > th | dose independent | rect. | 17 | 15 |
| 41 | 153.41 | temperature | 25 | 10 | < th | dose dependent | rect. | 20 | 11 |
| 48 | 153.80 | temperature | 20 | 90 | < th | dose independent | rect. | 21 | 14 |
| 95 | 155.03 | temperature | 15 | 270 | > th | dose dependent | rect. | 18 | 13 |
| 98 | 155.06 | temperature | 15 | 720 | > th | dose dependent | rect. | 19 | 4 |
| 100 | 155.10 | temperature | 20 | 30 | < th | dose independent | rect. | 20 | 16 |
| 115 | 155.54 | temperature | 20 | 10 | < th | dose independent | rect. | 22 | 9 |
| 161 | 156.40 | temperature | 20 | 30 | < th | dose independent | rect. | 17 | 19 |
| 262 | 157.96 | temperature | 20 | 30 | > th | dose independent | rect. | 11 | 23 |
| 288 | 158.26 | temperature | 20 | 90 | < th | dose dependent | rect. | 16 | 19 |
| 295 | 158.31 | temperature | 20 | 30 | < th | dose independent | rect. | 22 | 20 |
| 343 | 158.70 | temperature | 20 | 90 | < th | dose dependent | rect. | 13 | 22 |
| 355 | 158.80 | temperature | 20 | 90 | < th | dose dependent | rect. | 19 | 16 |
| 362 | 158.86 | temperature | 25 | 720 | < th | dose dependent | rect. | 18 | 6 |
| 370 | 159.00 | temperature | 20 | 90 | > th | dose independent | rect. | 3 | 23 |
| 393 | 159.27 | temperature | 20 | 30 | < th | dose independent | rect. | 14 | 22 |
| 410 | 159.49 | temperature | 20 | 30 | > th | dose independent | rect. | 13 | 23 |
| 424 | 159.66 | temperature | 20 | 30 | > th | dose independent | no | NA | NA |
| 427 | 159.67 | temperature | 20 | 30 | < th | dose independent | rect. | 17 | 14 |
| 463 | 159.99 | temperature | 20 | 30 | < th | dose independent | rect. | 9 | 22 |
| 465 | 160.01 | temperature | 20 | 90 | < th | dose independent | rect. | 11 | 23 |
| 524 | 160.39 | temperature | 20 | 30 | < th | dose independent | no | NA | NA |
| 538 | 160.55 | temperature | 20 | 30 | < th | dose independent | rect. | 5 | 23 |
| 546 | 160.61 | temperature | 20 | 30 | < th | dose independent | rect. | 3 | 23 |
| 553 | 160.72 | temperature | 20 | 30 | < th | dose independent | rect. | 1 | 23 |
| 574 | 160.84 | temperature | 20 | 10 | < th | dose dependent | rect. | 12 | 23 |
| 707 | 161.55 | temperature | 20 | 10 | < th | dose dependent | rect. | 12 | 19 |
| 712 | 161.61 | temperature | 20 | 90 | < th | dose independent | rect. | 11 | 20 |
| 742 | 161.78 | temperature | 15 | 10 | > th | dose dependent | sin | 10 | NA |
| 785 | 161.96 | temperature | 15 | 10 | > th | dose dependent | rect. | 20 | 12 |
| 835 | 162.19 | temperature | 20 | 30 | > th | dose independent | rect. | 15 | 23 |
| 981 | 162.90 | temperature | 20 | 30 | < th | dose independent | rect. | 14 | 17 |