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Os09g0279500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Plastid-specific 30S ribosomal protein 2, chloroplast precursor (PSRP- 2).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.5 (0.0274) R2 : 0.755
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.18 (0.0892) R2dC : 0.149 R2C : 0.389
β3 : -1.91 (0.103) R2dE : 0.294 R2E : 0.548
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.477 (0.0578) R2dN8 : 0.0487 R2N8 : 0.0631
σ : 0.512
deviance : 120.96
__
_____
C
peak time of C : 18.6
E
wheather : radiation
threshold : 0.01
memory length : 123
response mode : > th
dose dependency : dose independent
G
type of G : sin
peak or start time of G : 2.43
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
120.22 0.515 11.5 0.135 1.22 -1.86 -0.437 -0.00972 -0.472 18.7 0.09009 115 2.51 --
119.94 0.51 11.5 0.139 1.2 -1.89 -0.43 -- -0.466 18.6 0.01694 123 2.45 --
120.21 0.511 11.5 0.152 1.19 -1.9 -- 0.332 -0.464 18.6 0.01999 123 2.44 --
120.4 0.511 11.5 0.145 1.19 -1.9 -- -- -0.466 18.6 0.0195 123 2.45 --
166.47 0.601 11.5 0.155 -- -2.72 -- 0.693 -0.453 -- 4.371e-06 118 2.32 --
174.1 0.619 11.6 0.106 2.29 -- -0.579 -- -0.606 19.8 -- -- -- --
175.08 0.62 11.6 0.121 2.29 -- -- -- -0.607 19.9 -- -- -- --
163.53 0.596 11.5 0.133 -- -2.65 -- -- -0.398 -- 0.01418 101 2.17 --
120.96 0.512 11.5 -- 1.18 -1.91 -- -- -0.477 18.6 0.01 123 2.43 --
459.04 1 11.6 0.0951 -- -- -- -- -0.638 -- -- -- -- --
175.46 0.62 11.6 -- 2.29 -- -- -- -0.62 19.9 -- -- -- --
163.99 0.596 11.5 -- -- -2.68 -- -- -0.407 -- 0.02994 101 2.12 --
459.28 1 11.6 -- -- -- -- -- -0.649 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 118.47 temperature 10.0 90 > th dose dependent rect. 9 20
2 118.82 temperature 15.0 90 > th dose independent rect. 5 18
3 119.01 wind 5.0 90 < th dose independent rect. 23 6
4 119.54 temperature 30.0 90 < th dose independent rect. 5 18
5 121.40 radiation 30.0 90 < th dose independent rect. 5 6
7 122.28 wind 9.0 90 < th dose dependent rect. 23 6
8 122.48 precipitation 0.1 90 < th dose independent rect. 23 6
9 122.48 precipitation 0.1 90 < th dose dependent rect. 23 6
11 122.67 temperature 10.0 90 > th dose independent rect. 23 6
12 122.67 temperature 30.0 90 < th dose independent rect. 23 6
13 122.67 humidity 50.0 90 > th dose independent rect. 23 6
16 122.67 atmosphere 995.0 90 > th dose independent rect. 23 6
17 122.67 radiation 20.0 90 < th dose independent rect. 23 6
22 122.72 radiation 40.0 90 < th dose dependent rect. 23 6
25 122.88 radiation 1.0 90 < th dose independent rect. 23 6
28 122.95 radiation 1.0 90 < th dose dependent rect. 23 8
32 123.32 temperature 15.0 270 > th dose independent rect. 3 19
34 123.44 atmosphere 995.0 90 > th dose independent rect. 5 18
35 123.58 radiation 1.0 90 < th dose dependent sin 8 NA
37 123.91 atmosphere 1015.0 90 < th dose independent rect. 5 18
42 124.02 radiation 1.0 90 < th dose dependent rect. 23 12
47 124.29 humidity 50.0 90 > th dose dependent rect. 23 6
50 124.70 radiation 40.0 270 < th dose dependent rect. 3 19
52 124.75 radiation 40.0 90 < th dose independent rect. 5 18
54 124.87 wind 9.0 90 < th dose independent rect. 5 18
55 124.96 wind 5.0 270 < th dose independent rect. 21 7
58 125.21 humidity 70.0 90 > th dose independent rect. 5 6
59 125.31 atmosphere 995.0 270 > th dose independent rect. 17 14
66 125.52 atmosphere 1015.0 90 < th dose independent rect. 23 6
67 125.57 wind 9.0 270 < th dose independent rect. 7 10
70 125.65 radiation 40.0 90 < th dose dependent rect. 5 18
71 125.72 humidity 70.0 90 > th dose independent rect. 5 4
72 125.72 humidity 50.0 270 > th dose independent rect. 17 14
73 125.80 temperature 20.0 90 > th dose independent rect. 5 4
75 125.85 radiation 40.0 90 < th dose dependent rect. 5 6
76 125.87 humidity 70.0 90 > th dose independent rect. 5 18
77 125.87 precipitation 0.1 90 < th dose independent rect. 5 18
78 125.87 precipitation 0.1 90 < th dose dependent rect. 5 18
79 125.89 temperature 30.0 90 < th dose independent rect. 5 4
82 126.16 wind 9.0 90 < th dose independent rect. 9 20
84 126.45 radiation 40.0 270 < th dose independent rect. 3 19
89 126.73 radiation 40.0 270 < th dose dependent rect. 17 15
90 126.75 precipitation 0.1 90 < th dose independent rect. 9 20
91 126.75 precipitation 0.1 90 < th dose dependent rect. 9 20
95 126.84 wind 7.0 90 < th dose independent rect. 5 4
98 126.89 radiation 40.0 270 < th dose dependent rect. 3 7
100 126.92 radiation 1.0 90 < th dose independent rect. 23 12
101 126.95 wind 9.0 270 < th dose independent rect. 7 21
103 126.96 temperature 10.0 90 > th dose independent rect. 5 4
105 126.96 humidity 50.0 90 > th dose independent rect. 5 4
106 126.96 atmosphere 995.0 90 > th dose independent rect. 5 4
107 126.96 atmosphere 1015.0 90 < th dose independent rect. 5 4
108 126.96 temperature 10.0 90 > th dose independent rect. 9 20
109 126.97 precipitation 0.1 90 < th dose independent rect. 5 4
110 126.97 radiation 20.0 270 < th dose independent rect. 17 15
112 126.97 precipitation 0.1 90 < th dose dependent rect. 5 4
116 127.07 precipitation 0.1 270 < th dose independent rect. 7 10
117 127.07 precipitation 0.1 270 < th dose dependent rect. 7 10
126 127.19 temperature 10.0 270 > th dose independent rect. 7 10
127 127.19 atmosphere 1015.0 270 < th dose independent rect. 7 10
128 127.19 temperature 10.0 270 > th dose independent rect. 17 14
130 127.20 radiation 1.0 90 > th dose independent sin 9 NA
131 127.21 radiation 1.0 90 < th dose independent sin 9 NA
133 127.22 radiation 10.0 270 < th dose independent rect. 5 2
134 127.25 precipitation 0.1 270 < th dose independent rect. 7 21
135 127.25 precipitation 0.1 270 < th dose dependent rect. 7 21
138 127.37 atmosphere 995.0 90 > th dose dependent rect. 5 18
144 127.58 radiation 20.0 270 < th dose independent rect. 3 6
149 127.71 temperature 10.0 90 > th dose dependent rect. 5 4
155 127.84 wind 7.0 270 < th dose independent rect. 9 18
164 128.09 radiation 20.0 270 < th dose independent rect. 3 19
166 128.14 radiation 1.0 90 > th dose independent rect. 5 4
167 128.16 atmosphere 995.0 270 > th dose independent rect. 3 19
184 128.22 temperature 10.0 90 > th dose dependent rect. 23 6
188 128.30 humidity 50.0 90 > th dose dependent rect. 5 18
189 128.31 radiation 30.0 270 < th dose dependent rect. 5 2
191 128.35 wind 1.0 90 > th dose independent rect. 5 4
231 128.84 humidity 50.0 90 > th dose dependent rect. 5 4
233 128.88 wind 9.0 270 < th dose independent rect. 17 14
236 128.93 temperature 30.0 90 < th dose independent rect. 5 6
237 128.94 wind 9.0 90 < th dose dependent rect. 5 4
238 128.95 temperature 30.0 270 < th dose independent rect. 3 18
246 129.04 wind 1.0 270 > th dose independent rect. 8 9
257 129.07 temperature 10.0 270 > th dose independent rect. 7 21
264 129.13 atmosphere 995.0 10 > th dose dependent rect. 6 17
267 129.18 humidity 50.0 90 > th dose dependent rect. 5 6
270 129.21 humidity 70.0 10 > th dose independent rect. 6 4
272 129.24 precipitation 0.1 270 < th dose independent rect. 21 7
274 129.24 precipitation 0.1 270 < th dose dependent rect. 21 7
325 129.79 temperature 10.0 270 > th dose independent rect. 21 7
326 129.79 temperature 30.0 270 < th dose independent rect. 21 7
327 129.79 humidity 50.0 270 > th dose independent rect. 21 7
330 129.79 atmosphere 995.0 270 > th dose independent rect. 21 7
331 129.79 radiation 1.0 270 < th dose independent rect. 21 7
337 129.79 radiation 1.0 270 < th dose dependent rect. 21 7
361 129.97 temperature 30.0 270 < th dose independent rect. 3 6
366 130.08 precipitation 0.1 270 < th dose independent rect. 9 18
367 130.08 precipitation 0.1 270 < th dose dependent rect. 9 18
370 130.11 temperature 30.0 90 < th dose dependent rect. 5 18
382 130.23 temperature 10.0 270 > th dose dependent rect. 8 8
383 130.30 radiation 40.0 270 < th dose independent rect. 12 11
397 130.52 temperature 30.0 270 < th dose independent rect. 17 14
398 130.52 humidity 50.0 90 > th dose independent rect. 5 18
404 130.56 atmosphere 1015.0 270 < th dose independent rect. 3 19
441 131.13 atmosphere 995.0 90 > th dose dependent rect. 5 4
442 131.14 radiation 20.0 10 < th dose dependent rect. 23 7
465 131.23 wind 1.0 90 > th dose independent rect. 23 6
466 131.24 atmosphere 1000.0 10 > th dose independent rect. 6 17
468 131.28 wind 9.0 270 < th dose dependent rect. 5 2
489 131.47 humidity 50.0 10 > th dose dependent rect. 6 4
503 131.59 wind 9.0 270 < th dose independent rect. 3 6
504 131.59 temperature 10.0 270 > th dose independent rect. 3 6
506 131.59 humidity 50.0 270 > th dose independent rect. 3 6
507 131.59 atmosphere 995.0 270 > th dose independent rect. 3 6
508 131.59 atmosphere 1015.0 270 < th dose independent rect. 3 6
509 131.59 temperature 10.0 270 > th dose independent rect. 9 18
539 131.74 wind 9.0 270 < th dose independent rect. 3 19
542 131.75 humidity 50.0 270 > th dose dependent rect. 5 2
565 131.91 radiation 40.0 10 < th dose dependent rect. 6 18
593 132.05 precipitation 0.1 270 < th dose independent rect. 3 19
595 132.05 precipitation 0.1 270 < th dose dependent rect. 3 19
601 132.09 wind 1.0 90 > th dose independent rect. 5 18
603 132.10 wind 9.0 10 < th dose dependent rect. 23 7
616 132.25 precipitation 0.1 270 < th dose independent rect. 3 6
617 132.25 precipitation 0.1 270 < th dose dependent rect. 3 6
626 132.38 atmosphere 1015.0 90 < th dose independent rect. 9 20
629 132.42 humidity 70.0 270 > th dose independent rect. 3 6
630 132.45 atmosphere 995.0 270 > th dose dependent rect. 5 2
643 132.55 temperature 30.0 90 < th dose independent rect. 5 10
648 132.60 radiation 40.0 10 < th dose dependent rect. 6 4
650 132.62 precipitation 0.1 270 < th dose independent rect. 17 14
652 132.62 precipitation 0.1 270 < th dose dependent rect. 17 14
659 132.71 temperature 30.0 10 < th dose independent rect. 6 4
721 133.12 wind 5.0 10 < th dose independent rect. 6 3
723 133.14 wind 9.0 10 < th dose dependent rect. 6 3
725 133.15 wind 9.0 10 < th dose independent rect. 9 21
726 133.15 temperature 30.0 270 < th dose dependent rect. 3 18
775 133.49 temperature 10.0 10 > th dose independent rect. 6 3
778 133.49 humidity 50.0 10 > th dose independent rect. 6 3
780 133.49 atmosphere 995.0 10 > th dose independent rect. 6 3
781 133.49 atmosphere 1015.0 10 < th dose independent rect. 6 3
782 133.49 temperature 10.0 10 > th dose independent rect. 9 21
784 133.50 precipitation 0.1 10 < th dose independent rect. 6 3
795 133.50 humidity 50.0 270 > th dose independent rect. 3 18
796 133.50 precipitation 0.1 10 < th dose dependent rect. 6 3
804 133.57 atmosphere 995.0 90 > th dose dependent rect. 23 6
827 133.65 atmosphere 995.0 90 > th dose independent rect. 9 20
850 133.82 temperature 10.0 10 > th dose independent rect. 23 7
851 133.82 temperature 30.0 10 < th dose independent rect. 23 7
852 133.82 humidity 50.0 10 > th dose independent rect. 23 7
855 133.82 atmosphere 995.0 10 > th dose independent rect. 23 7
856 133.82 radiation 20.0 10 < th dose independent rect. 23 7
860 133.82 temperature 10.0 10 > th dose independent rect. 6 17
862 133.82 atmosphere 1015.0 10 < th dose independent rect. 6 17
874 133.92 temperature 15.0 4320 > th dose independent rect. 7 2
886 133.92 temperature 10.0 10 > th dose dependent rect. 6 3
907 134.05 wind 1.0 10 > th dose independent rect. 6 3
952 134.26 wind 1.0 270 > th dose independent rect. 9 18
992 134.47 temperature 10.0 270 > th dose dependent rect. 23 3