BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0279500 Os09g0279500|AK067492
(245 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os09g0279500 Similar to Plastid-specific 30S ribosomal prot... 390 e-109
Os02g0815200 Similar to 29 kDa ribonucleoprotein, chloropla... 144 6e-35
Os07g0631900 RNA-binding region RNP-1 (RNA recognition moti... 142 2e-34
Os08g0557100 Similar to Nucleic acid-binding protein precursor 142 3e-34
Os03g0376600 Similar to 29 kDa ribonucleoprotein, chloropla... 135 4e-32
Os09g0565200 Similar to Nucleic acid-binding protein precursor 129 1e-30
Os07g0158300 Similar to RNA binding protein 115 4e-26
Os08g0117100 RNA-binding region RNP-1 (RNA recognition moti... 104 7e-23
Os08g0483200 RNA-binding region RNP-1 (RNA recognition moti... 102 4e-22
Os04g0682400 RNA-binding region RNP-1 (RNA recognition moti... 101 4e-22
Os07g0615400 Similar to Oligouridylate binding protein 93 2e-19
Os04g0591000 RNA-binding region RNP-1 (RNA recognition moti... 90 2e-18
Os08g0492100 Paraneoplastic encephalomyelitis antigen famil... 87 9e-18
Os02g0221500 Paraneoplastic encephalomyelitis antigen famil... 86 2e-17
AK108879 84 7e-17
AK119744 84 7e-17
AK120313 82 3e-16
Os10g0457000 RNA-binding region RNP-1 (RNA recognition moti... 81 6e-16
Os09g0115400 Similar to Poly(A)-binding protein 80 2e-15
Os11g0637700 RNA-binding region RNP-1 (RNA recognition moti... 77 1e-14
Os08g0314800 Similar to Poly(A)-binding protein 77 1e-14
Os08g0320100 RNA-binding region RNP-1 (RNA recognition moti... 77 1e-14
Os03g0278500 Polyadenylate binding protein, human types 1, ... 77 1e-14
Os04g0504800 Similar to Poly(A)-binding protein 76 2e-14
Os08g0520300 Similar to Oligouridylate binding protein 75 4e-14
Os04g0449900 Similar to RNA Binding Protein 47 75 6e-14
Os09g0123200 Paraneoplastic encephalomyelitis antigen famil... 74 1e-13
Os06g0566100 RNA-binding region RNP-1 (RNA recognition moti... 72 3e-13
Os03g0174100 Similar to RNA Binding Protein 45 72 3e-13
Os03g0569900 Similar to RNA Binding Protein 45 71 7e-13
Os05g0114500 RNA-binding region RNP-1 (RNA recognition moti... 71 7e-13
Os01g0766700 70 1e-12
Os07g0584500 RNA-binding region RNP-1 (RNA recognition moti... 70 1e-12
Os01g0945800 RNA-binding region RNP-1 (RNA recognition moti... 69 3e-12
Os03g0836200 Similar to RNA-binding protein RZ-1 68 5e-12
Os05g0223300 Similar to RNA-binding protein 68 6e-12
Os12g0502200 Similar to Low temperature-responsive RNA-bind... 67 1e-11
AK111046 67 1e-11
Os03g0670700 Similar to Glycine-rich RNA-binding, abscisic ... 67 1e-11
Os07g0602600 Similar to RNA binding protein 67 1e-11
Os05g0223500 67 2e-11
Os12g0632000 Similar to Glycine-rich RNA-binding protein 1 ... 66 2e-11
Os12g0136200 WD40-like domain containing protein 64 8e-11
Os07g0187300 RNA-binding region RNP-1 (RNA recognition moti... 64 8e-11
>Os09g0279500 Similar to Plastid-specific 30S ribosomal protein 2, chloroplast
precursor (PSRP- 2)
Length = 245
Score = 390 bits (1003), Expect = e-109, Method: Compositional matrix adjust.
Identities = 201/230 (87%), Positives = 201/230 (87%)
Query: 16 PPAAALHHXXXXXXXXXXLTVGXXXXXXXXXXXXXXXXXXXSSSVLEAPEEVAARKLYVG 75
PPAAALHH LTVG SSSVLEAPEEVAARKLYVG
Sbjct: 16 PPAAALHHRSSSCRCPSRLTVGAARWWARRRQPAVVVRVVASSSVLEAPEEVAARKLYVG 75
Query: 76 NIPRTVTNDELAAMFADHGTVERAEVMFDKYTGRSRRFGFVTMSTPEEANAAIESLNETE 135
NIPRTVTNDELAAMFADHGTVERAEVMFDKYTGRSRRFGFVTMSTPEEANAAIESLNETE
Sbjct: 76 NIPRTVTNDELAAMFADHGTVERAEVMFDKYTGRSRRFGFVTMSTPEEANAAIESLNETE 135
Query: 136 VGGRKIKVNVTESFLPNIDRSAPEPEPVFVDSQYKVYVGNLAKSVTTEMLKNFFSEKGEV 195
VGGRKIKVNVTESFLPNIDRSAPEPEPVFVDSQYKVYVGNLAKSVTTEMLKNFFSEKGEV
Sbjct: 136 VGGRKIKVNVTESFLPNIDRSAPEPEPVFVDSQYKVYVGNLAKSVTTEMLKNFFSEKGEV 195
Query: 196 LSATVSRIPGTAKSKGYGFVTFSSEEEVQAAVSTFNNAELEGQPIRVNKA 245
LSATVSRIPGTAKSKGYGFVTFSSEEEVQAAVSTFNNAELEGQPIRVNKA
Sbjct: 196 LSATVSRIPGTAKSKGYGFVTFSSEEEVQAAVSTFNNAELEGQPIRVNKA 245
>Os02g0815200 Similar to 29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29)
Length = 316
Score = 144 bits (363), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 73/176 (41%), Positives = 113/176 (64%), Gaps = 10/176 (5%)
Query: 71 KLYVGNIPRTVTNDELAAMFADHGTVERAEVMFDKYTGRSRRFGFVTMSTPEEANAAIES 130
KLY GN+P + +LA + D+ T E EV++D+ TGRSR F FVTMST E+ I++
Sbjct: 146 KLYFGNLPYNCDSAQLAGIVQDYATPEMVEVLYDRATGRSRGFAFVTMSTIEDCEQVIKN 205
Query: 131 LNETEVGGRKIKVNVTESFLPNIDRSAPEPE-PVFVDSQYKVYVGNLAKSVTTEMLKNFF 189
L+ + GR ++VN + P+P+ P++ ++++K++VGNL+ +VT+EML F
Sbjct: 206 LDGSLYSGRTMRVNFADK---------PKPKLPLYPETEHKLFVGNLSWTVTSEMLTEMF 256
Query: 190 SEKGEVLSATVSRIPGTAKSKGYGFVTFSSEEEVQAAVSTFNNAELEGQPIRVNKA 245
+ G V+ A V T +S+GYGFV +S++EE+ A+S+ N ELEG+ IRVN A
Sbjct: 257 QKCGNVVGARVLYDGETGRSRGYGFVCYSTKEEMDEALSSLNGTELEGREIRVNLA 312
>Os07g0631900 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 264
Score = 142 bits (358), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 80/180 (44%), Positives = 108/180 (60%), Gaps = 9/180 (5%)
Query: 71 KLYVGNIPRTVTNDELAAMFADHGTVERAEVMFDKYTGRSRRFGFVTMSTPEEANAAIES 130
K++VGN+P +V + +LA +F G+VE EV++D+ TGRSR FGFVTMST EEA AA+E
Sbjct: 81 KVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVVYDRQTGRSRGFGFVTMSTAEEAGAAVEQ 140
Query: 131 LNETEVGGRKIKVNV-----TESFLPNIDRSAPEPEPVFVDSQYKVYVGNLAKSVTTEML 185
N GR ++VN + F P R DS K+YVGNLA V L
Sbjct: 141 FNGYTFQGRPLRVNSGPPPPRDDFAPRSPRGGGSN----FDSSNKLYVGNLAWGVDNSTL 196
Query: 186 KNFFSEKGEVLSATVSRIPGTAKSKGYGFVTFSSEEEVQAAVSTFNNAELEGQPIRVNKA 245
+N FSE+G VL A V + +S+G+GFVT+ S EEV A+S + +L+G+ IRV A
Sbjct: 197 ENLFSEQGTVLDAKVIYDRESGRSRGFGFVTYGSAEEVNNAISNLDGVDLDGRQIRVTVA 256
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 38/81 (46%), Positives = 56/81 (69%)
Query: 68 AARKLYVGNIPRTVTNDELAAMFADHGTVERAEVMFDKYTGRSRRFGFVTMSTPEEANAA 127
++ KLYVGN+ V N L +F++ GTV A+V++D+ +GRSR FGFVT + EE N A
Sbjct: 178 SSNKLYVGNLAWGVDNSTLENLFSEQGTVLDAKVIYDRESGRSRGFGFVTYGSAEEVNNA 237
Query: 128 IESLNETEVGGRKIKVNVTES 148
I +L+ ++ GR+I+V V ES
Sbjct: 238 ISNLDGVDLDGRQIRVTVAES 258
>Os08g0557100 Similar to Nucleic acid-binding protein precursor
Length = 194
Score = 142 bits (357), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 76/175 (43%), Positives = 110/175 (62%), Gaps = 5/175 (2%)
Query: 71 KLYVGNIPRTVTNDELAAMFADHGTVERAEVMFDKYTGRSRRFGFVTMSTPEEANAAIES 130
K+YVGN+P V ++ LA +F G VE AEV++++ TG+SR FGFVTMST EEA+ AIE
Sbjct: 17 KVYVGNLPYDVDSEGLAQLFEQAGVVEVAEVIYNRETGQSRGFGFVTMSTIEEADKAIEM 76
Query: 131 LNETEVGGRKIKVNVTESFLPNIDRSAPEPEPVFVDSQYKVYVGNLAKSVTTEMLKNFFS 190
LN ++ GR + VN ++R + P F + YVGNL V L FS
Sbjct: 77 LNRYDINGRLLNVNRAAPRGSRVERPPRQFAPAF-----RAYVGNLPWQVDDSRLLQLFS 131
Query: 191 EKGEVLSATVSRIPGTAKSKGYGFVTFSSEEEVQAAVSTFNNAELEGQPIRVNKA 245
E GEV++A+V + +S+G+GFV+ +S+EE+ A+S + EL+G+P+RVN A
Sbjct: 132 EHGEVVNASVVYDRESGRSRGFGFVSMASKEELDDAISALDGQELDGRPLRVNVA 186
Score = 77.8 bits (190), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 39/90 (43%), Positives = 59/90 (65%), Gaps = 1/90 (1%)
Query: 58 SSVLEAPEEVA-ARKLYVGNIPRTVTNDELAAMFADHGTVERAEVMFDKYTGRSRRFGFV 116
S V P + A A + YVGN+P V + L +F++HG V A V++D+ +GRSR FGFV
Sbjct: 97 SRVERPPRQFAPAFRAYVGNLPWQVDDSRLLQLFSEHGEVVNASVVYDRESGRSRGFGFV 156
Query: 117 TMSTPEEANAAIESLNETEVGGRKIKVNVT 146
+M++ EE + AI +L+ E+ GR ++VNV
Sbjct: 157 SMASKEELDDAISALDGQELDGRPLRVNVA 186
>Os03g0376600 Similar to 29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29)
Length = 265
Score = 135 bits (339), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 79/182 (43%), Positives = 109/182 (59%), Gaps = 19/182 (10%)
Query: 71 KLYVGNIPRTVTNDELAAMFADHGTVERAEVMFDKYTGRSRRFGFVTMSTPEEANAAIES 130
+++VGN+P +V + +LA +F G+VE EV++DK TGRSR FGFVTMS+ EE AA+E
Sbjct: 87 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSSVEEVEAAVEQ 146
Query: 131 LNETEVGGRKIKVNVTESFLPNIDRSAPEPEPVFVDSQY-------KVYVGNLAKSVTTE 183
N + GR ++VN S P P P SQ +VYVGNL+ V
Sbjct: 147 FNGYILDGRSLRVN-----------SGP-PPPREQSSQRAPRGEANRVYVGNLSWGVDNA 194
Query: 184 MLKNFFSEKGEVLSATVSRIPGTAKSKGYGFVTFSSEEEVQAAVSTFNNAELEGQPIRVN 243
L N FS +GEVL A V + +S+G+GFVT+ S EEV+ AVS + A+++G+ IRV
Sbjct: 195 ALANLFSGEGEVLEAKVIYDRESGRSRGFGFVTYGSAEEVENAVSNLDGADMDGRQIRVT 254
Query: 244 KA 245
A
Sbjct: 255 VA 256
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 54/83 (65%)
Query: 69 ARKLYVGNIPRTVTNDELAAMFADHGTVERAEVMFDKYTGRSRRFGFVTMSTPEEANAAI 128
A ++YVGN+ V N LA +F+ G V A+V++D+ +GRSR FGFVT + EE A+
Sbjct: 179 ANRVYVGNLSWGVDNAALANLFSGEGEVLEAKVIYDRESGRSRGFGFVTYGSAEEVENAV 238
Query: 129 ESLNETEVGGRKIKVNVTESFLP 151
+L+ ++ GR+I+V V ES P
Sbjct: 239 SNLDGADMDGRQIRVTVAESKPP 261
>Os09g0565200 Similar to Nucleic acid-binding protein precursor
Length = 322
Score = 129 bits (325), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 73/185 (39%), Positives = 109/185 (58%), Gaps = 8/185 (4%)
Query: 61 LEAPEEVAARKLYVGNIPRTVTNDELAAMFADHGTVERAEVMFDKYTGRSRRFGFVTMST 120
+E PEE K+YVGN+P + ++ LA +F G VE +EV++++ T RSR FGFVTMST
Sbjct: 137 VEPPEEA---KVYVGNLPYDIDSERLAQLFEQAGIVEVSEVIYNRETDRSRGFGFVTMST 193
Query: 121 PEEANAAIESLNETEVGGRKIKVNVTESFLPNIDRSAPEPEPVFVDSQYKVYVGNLAKSV 180
EEA A+E + +V GR + VN ++R + P F ++YVGNL V
Sbjct: 194 VEEAEKAVEMFHRYDVDGRLLTVNKAAPRGARVERPPRQFGPSF-----RIYVGNLPWQV 248
Query: 181 TTEMLKNFFSEKGEVLSATVSRIPGTAKSKGYGFVTFSSEEEVQAAVSTFNNAELEGQPI 240
L FSE G+V+ A V T +S+G+GFVT +++EE+ A++ + L+G+ +
Sbjct: 249 DDSRLVQLFSEHGKVVDARVVYDRETGRSRGFGFVTMATQEELDDAIAALDGQSLDGRAL 308
Query: 241 RVNKA 245
RVN A
Sbjct: 309 RVNVA 313
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 38/82 (46%), Positives = 55/82 (67%)
Query: 71 KLYVGNIPRTVTNDELAAMFADHGTVERAEVMFDKYTGRSRRFGFVTMSTPEEANAAIES 130
++YVGN+P V + L +F++HG V A V++D+ TGRSR FGFVTM+T EE + AI +
Sbjct: 238 RIYVGNLPWQVDDSRLVQLFSEHGKVVDARVVYDRETGRSRGFGFVTMATQEELDDAIAA 297
Query: 131 LNETEVGGRKIKVNVTESFLPN 152
L+ + GR ++VNV E P
Sbjct: 298 LDGQSLDGRALRVNVAEERPPR 319
>Os07g0158300 Similar to RNA binding protein
Length = 364
Score = 115 bits (287), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 67/180 (37%), Positives = 107/180 (59%), Gaps = 7/180 (3%)
Query: 71 KLYVGNIPRTVTNDELAAMFADHGTVERAEVMFDKYTGRSRRFGFVTMSTPEEANAAIES 130
+L+VGN+P T+T+ E++ F++ G V+ ++++DK T RSR F FVTM+T EEA AI+
Sbjct: 135 RLFVGNLPYTMTSGEISQTFSEAGRVDNVQIIYDKVTDRSRGFAFVTMATAEEAATAIQM 194
Query: 131 LNETEVGGRKIKVNVTESFLPN-----IDRSAPEPEPVFVDSQYKVYVGNLAKSVTTEML 185
N +GGR +VN E +P + +A E D +K+Y GNL V + L
Sbjct: 195 FNGALLGGRTARVNYPE--VPRGGERAVGSAAATRENRRDDGTFKIYAGNLGWGVRADAL 252
Query: 186 KNFFSEKGEVLSATVSRIPGTAKSKGYGFVTFSSEEEVQAAVSTFNNAELEGQPIRVNKA 245
+ F + +L A V + +S+G+GFV+F + E+ QAA+ + ELEG+P+R++ A
Sbjct: 253 RAAFEGQPGLLDARVIFERDSGRSRGFGFVSFRTAEDAQAALEALDGVELEGRPLRLSMA 312
>Os08g0117100 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 319
Score = 104 bits (259), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 61/180 (33%), Positives = 104/180 (57%), Gaps = 7/180 (3%)
Query: 71 KLYVGNIPRTVTNDELAAMFADHGTVERAEVMFDKYTGRSRRFGFVTMSTPEEANAAIES 130
+L+V N+PR D+L +F +GTV E+ D TG SR GFVTM + EA A+ +
Sbjct: 135 ELFVCNLPRRCDVDDLYELFKPYGTVLSVEISRDPETGLSRGCGFVTMRSLPEARTAMNA 194
Query: 131 LNETEVGGRKIKVNVTESFLP-----NIDRSAPEPEPVFVDSQYKVYVGNLAKSVTTEML 185
L+ ++ GR++ V ++ + N+ + P + +F +S +K+YVGN+A SV + L
Sbjct: 195 LDGFDLDGREMLVKLSSDVVSKRRNINMTHTPPVKDHIF-ESPHKIYVGNIAWSVEPQEL 253
Query: 186 KNFFSEKGEVLSATVSRIPGTAKSKGYGFVTFSSEEEVQAAVSTFNNAELEGQPIRVNKA 245
+ +FS+ G V+S + + + YGF++F+S EE++AA+ +N G+ I V +A
Sbjct: 254 REYFSQCGTVVSTRLLTDRKGGRGRVYGFLSFASAEELEAALK-LDNTHFHGRNILVRQA 312
>Os08g0483200 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 269
Score = 102 bits (253), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 67/174 (38%), Positives = 93/174 (53%), Gaps = 10/174 (5%)
Query: 71 KLYVGNIPRTVTNDELAAMFADHGTVERAEVMFDKYTGRSRRFGFVTMSTPEEANAAIES 130
+L NIP T D++ A+F HG+V E+ T R+R FVTM + EEA +A+
Sbjct: 74 RLIAQNIPWDCTADDMRALFGKHGSVVDVELSMYNST-RNRGLAFVTMGSEEEALSALNH 132
Query: 131 LNETEVGGRKIKVNVTESFLPN-IDRSAPEPEPVFVDSQYKVYVGNLAKSVTTEMLKNFF 189
LN T + R IKV+ T S + SAP P ++ V+VGNL V + L+ F
Sbjct: 133 LNSTTLNDRTIKVDFTRSRKKQYVVPSAPMP-------KHSVFVGNLTWRVRSRHLRELF 185
Query: 190 SEKGEVLSA-TVSRIPGTAKSKGYGFVTFSSEEEVQAAVSTFNNAELEGQPIRV 242
+ V S V +S GYGFV+FSS+E +AA+STFN +L G+ I V
Sbjct: 186 ASTPGVQSVEVVFHTTSPRRSAGYGFVSFSSKEAAEAAISTFNGTKLMGRSINV 239
>Os04g0682400 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 1008
Score = 101 bits (252), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 67/178 (37%), Positives = 97/178 (54%), Gaps = 4/178 (2%)
Query: 65 EEVAARKLYVGNIPRTVTNDELAAMFADHGTVERAEVMFDKYTGRSRRFGFVTMSTPEEA 124
+EV LYVGN+P +V + +L +F G + R+ V+ D +TG S+ +GFV S P A
Sbjct: 288 KEVDNTNLYVGNLPASVGSHKLIELFLPFGQIVRSRVVDDCFTGLSQGYGFVKYSDPRCA 347
Query: 125 NAAIESLNETEVGGRKIKVNVTESFLPNIDRSAPEPEPVFVDSQYKVYVGNLAKSVTTEM 184
+ AI+ +N V G +KV VT F + D S +P K+YV NL+ S+ T+
Sbjct: 348 SEAIKRMNGRLVEGTALKVRVT-GFPSSEDNSQ---QPSKETDMAKLYVCNLSLSMNTDR 403
Query: 185 LKNFFSEKGEVLSATVSRIPGTAKSKGYGFVTFSSEEEVQAAVSTFNNAELEGQPIRV 242
L + F GEV +A V++ T SKGYGFV +SS AV N ++G+ I V
Sbjct: 404 LIHLFLPFGEVTNAKVAKDHTTGLSKGYGFVQYSSPHHAAEAVIHLNGRLVDGRKIEV 461
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 65/195 (33%), Positives = 91/195 (46%), Gaps = 14/195 (7%)
Query: 65 EEVAARKLYVGNIPRTVTNDELAAMFADHGTVERAEVMFDKYTGRSRRFGFVTMSTPEEA 124
+E KLYV N+ ++ D L +F G V A+V D TG S+ +GFV S+P A
Sbjct: 383 KETDMAKLYVCNLSLSMNTDRLIHLFLPFGEVTNAKVAKDHTTGLSKGYGFVQYSSPHHA 442
Query: 125 NAAIESLNETEVGGRKIKVNVT--ESFLPNIDRSAPE------------PEPVFVDSQYK 170
A+ LN V GRKI+V V+ S LPN +P V
Sbjct: 443 AEAVIHLNGRLVDGRKIEVRVSGIPSTLPNSAVESPSTTRNSAVESPSTTRTVKEIDMSN 502
Query: 171 VYVGNLAKSVTTEMLKNFFSEKGEVLSATVSRIPGTAKSKGYGFVTFSSEEEVQAAVSTF 230
+YV N+ S+ T+ L F G++ A V P T +KGYGF+ F+ E A++
Sbjct: 503 LYVCNMPSSIDTKKLVELFLPFGKITHARVVADPDTFSAKGYGFIKFTDSESATKAIAAM 562
Query: 231 NNAELEGQPIRVNKA 245
N A + G+ I V A
Sbjct: 563 NGALVGGEMIIVRVA 577
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 85/188 (45%), Gaps = 15/188 (7%)
Query: 65 EEVAARKLYVGNIPRTVTNDELAAMFADHGTVERAEVMFDKYTGRSRRFGFVTMSTPEEA 124
+E+ LYVG +P ++T D+ +F G V +A MF R +R+G V P A
Sbjct: 681 KEIDMANLYVGRVPSSLTEDQFIDLFRPFGRVVQAR-MF-----RFQRYGMVRFDNPSCA 734
Query: 125 NAAIESLNETEVGGRKIKVNVTESFLPNIDRSAPEPEPVFVDSQYK-------VYVGNLA 177
AAI+ L+ ++GG + V V LP +A + S + +YV +L
Sbjct: 735 AAAIDHLDGYQIGGSILAVRVAG--LPAESNAAKGALTSQMSSNEQGQIDMTNLYVSHLP 792
Query: 178 KSVTTEMLKNFFSEKGEVLSATVSRIPGTAKSKGYGFVTFSSEEEVQAAVSTFNNAELEG 237
V E L + F G++ A V T SKG+GFV F+ A++ N L+G
Sbjct: 793 SYVNNERLIDLFLPCGQITQAKVVVERYTGVSKGFGFVKFADAYSAAVALTHMNGYPLDG 852
Query: 238 QPIRVNKA 245
+ V A
Sbjct: 853 HVLEVRIA 860
>Os07g0615400 Similar to Oligouridylate binding protein
Length = 427
Score = 92.8 bits (229), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 64/197 (32%), Positives = 93/197 (47%), Gaps = 35/197 (17%)
Query: 72 LYVGNIPRTVTNDELAAMFADHGTVERAEVMFDKYTGRSRRFGFVTMSTPEEANAAIESL 131
++VG++ VT+ L A F+ + + A VM+D+ TGRSR +GFV+ ++A +AI L
Sbjct: 152 IFVGDLSPEVTDSALFAFFSGYSSCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDL 211
Query: 132 NETEVGGRKIKV-------------------------NVTESFLPNIDRSAPEPEPVFVD 166
N +G R+I+ N+TE + APE P
Sbjct: 212 NGQWLGSRQIRCNWATKGASNGEQQTSDSKNVADLTNNLTEDGKEKANEDAPENNP---- 267
Query: 167 SQYK-VYVGNLAKSVTTEMLKNFFSEKGEVLSATVSRIPGTAKSKGYGFVTFSSEEEVQA 225
QY+ VYVGNLA VT ++L F G V RI KG+GFV +S+ E
Sbjct: 268 -QYRTVYVGNLAHEVTQDVLHRLFHALGAGAIEEV-RI---QLGKGFGFVRYSNHAEAAL 322
Query: 226 AVSTFNNAELEGQPIRV 242
A+ N L G+PI+
Sbjct: 323 AIQMGNGRILGGKPIKC 339
Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 84/177 (47%), Gaps = 14/177 (7%)
Query: 69 ARKLYVGNIPRTVTNDELAAMFADHGTVERAEVMFDKYTGRSRRFGFVTMSTPEEANAAI 128
R +YVGN+ VT L +F G VE +++ + + +GFV A +I
Sbjct: 64 CRSVYVGNVHVQVTEALLREVFQSTGLVEGCKLIRKEKS----SYGFVDYYDRRSAALSI 119
Query: 129 ESLNETEVGGRKIKVNVTESFLPNIDRSAPEPEPVFVDSQYKVYVGNLAKSVTTEMLKNF 188
+LN ++ G+ I+VN + D + + ++VG+L+ VT L F
Sbjct: 120 LTLNGKQIFGQLIRVNWAYASGQREDTT----------DHFNIFVGDLSPEVTDSALFAF 169
Query: 189 FSEKGEVLSATVSRIPGTAKSKGYGFVTFSSEEEVQAAVSTFNNAELEGQPIRVNKA 245
FS A V T +S+GYGFV+F ++++ Q+A++ N L + IR N A
Sbjct: 170 FSGYSSCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGQWLGSRQIRCNWA 226
>Os04g0591000 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 291
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 72/173 (41%), Positives = 102/173 (58%), Gaps = 6/173 (3%)
Query: 70 RKLYVGNIPRTVTNDELAAMFADHGTVERAEVMFDKYTGRSRRFGFVTMSTPEEANAAIE 129
RKLYV NIP + E+ +FA G V+ EV+ G+ + F FVTM+T EEA AA+E
Sbjct: 80 RKLYVANIPWSFPAPEIEKLFAQCGAVKDVEVI-KGKDGKKKGFAFVTMATAEEAAAAVE 138
Query: 130 SLNETEVGGRKIKVNVTESFLPNIDRSAPEPEPVFVDSQYKVYVGNLAKSVTTEMLKNFF 189
LN +V GR I+V ++SF + AP P P + ++K+YV NL +K FF
Sbjct: 139 KLNSLDVMGRTIRVEFSKSF----RKPAPPPPPGTILERHKLYVSNLPWKARAPNMKEFF 194
Query: 190 SEKGEVLSATVSRIPGTAKSKGYGFVTFSSEEEVQAAVSTFNNAELEGQPIRV 242
S K LSA V + KS GYGFV+F ++EE +AA++ + EL G+P+R+
Sbjct: 195 S-KFNPLSAKVVFDSPSGKSAGYGFVSFGTKEEAEAALTELDGKELMGRPVRL 246
>Os08g0492100 Paraneoplastic encephalomyelitis antigen family protein
Length = 362
Score = 87.4 bits (215), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 94/176 (53%), Gaps = 13/176 (7%)
Query: 71 KLYVGNIPRTVTNDELAAMFADHGTVERAEVMFDKYTGRSRRFGFVTMSTPEEANAAIES 130
K++VG +PR T + F +G + + +M DK+T + R FGF+T S P + ++
Sbjct: 24 KIFVGGLPRDTTEADFVKHFGQYGEIVDSVIMRDKHTSQPRGFGFITYSNPAVVDRVMDD 83
Query: 131 LNETEVGGRKIKVNVTESFLPNIDRSAPEPEPVFVDSQ-YKVYVGNLAKSVTTEMLKNFF 189
++E G++++ I R+ P+ D + K++VG L +++T + K+FF
Sbjct: 84 IHEFN--GKQVE----------IKRTIPKDSVQSKDFKTKKIFVGGLPQALTEDDFKHFF 131
Query: 190 SEKGEVLSATVSRIPGTAKSKGYGFVTFSSEEEVQAAVSTFNNAELEGQPIRVNKA 245
+ G V+ + R T +S+G+GF+ FSS++ V ++ N +L G + + KA
Sbjct: 132 QKYGPVVDHQIMRDHQTKRSRGFGFIVFSSDQVVDDLLANGNMIDLAGAKVEIKKA 187
>Os02g0221500 Paraneoplastic encephalomyelitis antigen family protein
Length = 397
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 93/185 (50%), Gaps = 14/185 (7%)
Query: 63 APEEVAARKLYVGNIPRTVTNDELAAMFADHGTVERAEVMFDKYTGRSRRFGFVTMSTPE 122
AP ++ K++VG + T + + F +G + + +M DK+T R FGFVT S P
Sbjct: 59 APGGDSSGKIFVGGVAWETTEESFSKHFEKYGAITDSVIMKDKHTKMPRGFGFVTFSDPS 118
Query: 123 EANAAIESLNETEVGGRKIKVNVTESFLPNIDRSAPEPEPVFVDS--QYKVYVGNLAKSV 180
+ +E +E + GR ++V R+ P E D K++VG L S+
Sbjct: 119 VIDKVLE--DEHVIDGRTVEVK----------RTVPREEMSSKDGPKTRKIFVGGLPSSL 166
Query: 181 TTEMLKNFFSEKGEVLSATVSRIPGTAKSKGYGFVTFSSEEEVQAAVSTFNNAELEGQPI 240
T + L+ FS G+++ + T +S+G+GFVTF SE+ V+ +S +L G+ +
Sbjct: 167 TEDELREHFSPYGKIVEHQIMLDHSTGRSRGFGFVTFESEDSVERVISEGRMRDLGGKQV 226
Query: 241 RVNKA 245
+ KA
Sbjct: 227 EIKKA 231
>AK108879
Length = 670
Score = 84.3 bits (207), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 100/185 (54%), Gaps = 9/185 (4%)
Query: 65 EEVAAR--KLYVGNIPRTVTNDELAAMFADHGTVERAEVMFDKYTGRSRRFGFVTMSTPE 122
EE+ A+ +++ N+ VT++EL A+F G ++ A + D+ +G+SR FGF+ E
Sbjct: 218 EELKAQFTNVFIKNLDEAVTDEELQALFEPFGEIQSAILQRDE-SGKSRGFGFINFVEHE 276
Query: 123 EANAAIESLNETEVGGRKIKVNVTESFLPNIDRSAPEPEPVFVDSQYK-----VYVGNLA 177
+A A+E+LN+ EV G++I V + + + E + ++ K +YV NL
Sbjct: 277 DAQKAVEALNDVEVNGKRIFVGRAQKKSERTEELRRQFEALKLERMSKFHGVNLYVKNLD 336
Query: 178 KSVTTEMLKNFFSEKGEVLSATVSRIPGTAKSKGYGFVTFSSEEEVQAAVSTFNNAELEG 237
+ VT + L+ F+ G + S V + S+G+GFV FS+ EE A+S N + G
Sbjct: 337 EMVTEDQLRMEFTPFGSISSLRVM-VDEKGVSRGFGFVCFSAPEEAARAISEMNGRMVNG 395
Query: 238 QPIRV 242
+P+ V
Sbjct: 396 KPLYV 400
Score = 82.0 bits (201), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 92/175 (52%), Gaps = 9/175 (5%)
Query: 72 LYVGNIPRTVTNDELAAMFADHGTVERAEVMFDKYTGRSRRFGFVTMSTPEEANAAIESL 131
+++ N+ +T+ N L F+ G + +V+ D G SR FGFV T E A+ AI+ +
Sbjct: 134 IFIKNLDKTIDNKALHDTFSAFGNILSCKVVTDD-QGASRGFGFVHYETREAADLAIDKV 192
Query: 132 NETEVGGRKIKVNVTESFLPNIDRSAPEPEPVFVDSQY-KVYVGNLAKSVTTEMLKNFFS 190
N + G IKV V +I R + +Q+ V++ NL ++VT E L+ F
Sbjct: 193 NGMLLNG--IKVFVGH----HISRKERISHLEELKAQFTNVFIKNLDEAVTDEELQALFE 246
Query: 191 EKGEVLSATVSRIPGTAKSKGYGFVTFSSEEEVQAAVSTFNNAELEGQPIRVNKA 245
GE+ SA + R + KS+G+GF+ F E+ Q AV N+ E+ G+ I V +A
Sbjct: 247 PFGEIQSAILQRDE-SGKSRGFGFINFVEHEDAQKAVEALNDVEVNGKRIFVGRA 300
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 74/166 (44%), Gaps = 12/166 (7%)
Query: 72 LYVGNIPRTVTNDELAAMFADHGTVERAEVMFDKYTGRSRRFGFVTMSTPEEANAAIESL 131
LYVG + VT L +F+ G V V D T RS + +V +P + AIESL
Sbjct: 46 LYVGELHPDVTEAMLYEIFSQIGPVSSIRVCRDAITRRSLGYAYVNFHSPADCERAIESL 105
Query: 132 NETEVGGRKIKVNVTESFLPNIDRSAPEPEPVFVDSQYKVYVGNLAKSVTTEMLKNFFSE 191
N + G+ ++ ++ P + RS +++ NL K++ + L + FS
Sbjct: 106 NYALIKGQPCRLMWSQR-DPALRRSGVG----------NIFIKNLDKTIDNKALHDTFSA 154
Query: 192 KGEVLSATVSRIPGTAKSKGYGFVTFSSEEEVQAAVSTFNNAELEG 237
G +LS V S+G+GFV + + E A+ N L G
Sbjct: 155 FGNILSCKVV-TDDQGASRGFGFVHYETREAADLAIDKVNGMLLNG 199
>AK119744
Length = 746
Score = 84.3 bits (207), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 70/237 (29%), Positives = 101/237 (42%), Gaps = 60/237 (25%)
Query: 65 EEVAAR--KLYVGNIPRTVTNDELAAMFADHGTVERAEVMFDKYTGRSRRFGFVTMSTPE 122
EEV A +YV NI VT+DE +F HG + A + D+ G+SR FGFV E
Sbjct: 222 EEVKANFTNIYVKNIDLDVTDDEFRELFEKHGDITSASIARDE-QGKSRGFGFVNYIKHE 280
Query: 123 EANAAIESLNETEVGGRKIKVNVTESFLPNIDRSAPEPEPVFVDSQYK-----VYVGNLA 177
A+AA+E+LN+TE G+K+ V + + + E ++ Q K +Y+ NL
Sbjct: 281 AASAAVEALNDTEFRGQKLYVGRAQKKHEREEELRKQYEAARLEKQSKYQGVNLYIKNLN 340
Query: 178 KSVTTEMLKNFFSEKGEVLSATVSR----------------------------------- 202
V E L++ F+ G + SA V R
Sbjct: 341 DDVDDEKLRDMFTPFGTITSAKVMRDAMPAERSETPADEKKEESKEESKEESEKTEEGAE 400
Query: 203 ------IPG-----------TAKSKGYGFVTFSSEEEVQAAVSTFNNAELEGQPIRV 242
PG KSKG+GFV FS+ +E AV+ N +EG+P+ V
Sbjct: 401 EKKDENKPGEKVTIKGEKKILGKSKGFGFVCFSNPDEATKAVTEMNQKMIEGKPLYV 457
Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 88/175 (50%), Gaps = 9/175 (5%)
Query: 72 LYVGNIPRTVTNDELAAMFADHGTVERAEVMFDKYTGRSRRFGFVTMSTPEEANAAIESL 131
+++ N+ + N L FA G + +V D+ G S+ +GFV T E AN AI+ +
Sbjct: 138 VFIKNLDHAIDNKALHDTFAAFGNILSCKVAQDEL-GNSKGYGFVHYETAEAANNAIKHV 196
Query: 132 NETEVGGRKIKVNVTESFLPNIDRSAPEPEPVFVDSQY-KVYVGNLAKSVTTEMLKNFFS 190
N + +K+ V +P +R + E V + + +YV N+ VT + + F
Sbjct: 197 NGMLLNEKKVFVG---HHIPKKERMSKFEE---VKANFTNIYVKNIDLDVTDDEFRELFE 250
Query: 191 EKGEVLSATVSRIPGTAKSKGYGFVTFSSEEEVQAAVSTFNNAELEGQPIRVNKA 245
+ G++ SA+++R KS+G+GFV + E AAV N+ E GQ + V +A
Sbjct: 251 KHGDITSASIARDE-QGKSRGFGFVNYIKHEAASAAVEALNDTEFRGQKLYVGRA 304
>AK120313
Length = 409
Score = 82.4 bits (202), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 92/185 (49%), Gaps = 14/185 (7%)
Query: 63 APEEVAARKLYVGNIPRTVTNDELAAMFADHGTVERAEVMFDKYTGRSRRFGFVTMSTPE 122
AP ++ K++VG + T + + F +G + + +M DK+T R GFVT S P
Sbjct: 71 APGGDSSGKIFVGGVAWETTEESFSKHFEKYGAITDSVIMKDKHTKMPRGSGFVTFSDPS 130
Query: 123 EANAAIESLNETEVGGRKIKVNVTESFLPNIDRSAPEPEPVFVDS--QYKVYVGNLAKSV 180
+ +E +E + GR ++V R+ P E D K++VG L S+
Sbjct: 131 VIDKVLE--DEHVIDGRTVEVK----------RTVPREEMSSKDGPKTRKIFVGGLPSSL 178
Query: 181 TTEMLKNFFSEKGEVLSATVSRIPGTAKSKGYGFVTFSSEEEVQAAVSTFNNAELEGQPI 240
T + L+ FS G+++ + T +S+G+GFVTF SE+ V+ +S +L G+ +
Sbjct: 179 TEDELREHFSPYGKIVEHQIMLDHSTGRSRGFGFVTFESEDSVERVISEGRMRDLGGKQV 238
Query: 241 RVNKA 245
+ KA
Sbjct: 239 EIKKA 243
>Os10g0457000 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 355
Score = 81.3 bits (199), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 87/174 (50%), Gaps = 13/174 (7%)
Query: 73 YVGNIPRTVTNDELAAMFADHGTVERAEVMFDKYTGRSRRFGFVTMSTPEEANAAIESLN 132
YVGN+ V+ + L +F G V V D+ T + +GFV + E+A+ AI+ LN
Sbjct: 28 YVGNLDPQVSEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKILN 87
Query: 133 ETEVGGRKIKVNVTESFLPNIDRSAPEPEPVFVDSQYKVYVGNLAKSVTTEMLKNFFSEK 192
++ G+ I+VN ++D A +++GNL V ++L + FS
Sbjct: 88 MIKLYGKPIRVNKASQDKKSLDVGA------------NLFIGNLDPDVDEKLLYDTFSAF 135
Query: 193 GEVLS-ATVSRIPGTAKSKGYGFVTFSSEEEVQAAVSTFNNAELEGQPIRVNKA 245
G +++ + R P T S+G+GFV++ S E A+ NN L +PI V+ A
Sbjct: 136 GVIVTNPKIMRDPETGNSRGFGFVSYDSFESSDQAIEAMNNQHLCNRPITVSYA 189
>Os09g0115400 Similar to Poly(A)-binding protein
Length = 662
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 93/191 (48%), Gaps = 19/191 (9%)
Query: 63 APEEVAARKLYVGNIPRTVTNDELAAMFADHGTVERAEVMFDKYTGRSRRFGFVTMSTPE 122
+P +V +YV N+ T D+L +F GT+ A VM + GRS+ FGFV +P+
Sbjct: 212 SPGQVKFNNVYVKNLSENTTEDDLKEIFGKFGTITSAVVMREG-DGRSKCFGFVNFESPD 270
Query: 123 EANAAIESLN-------ETEVGGRKIK----VNVTESFLPNIDRSAPEPEPVFVDSQYKV 171
+A A++ LN E VG + K + + E F N+ +A + + +
Sbjct: 271 DAAQAVQELNGKKFDDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQ------NTNL 324
Query: 172 YVGNLAKSVTTEMLKNFFSEKGEVLSATVSRIPGTAKSKGYGFVTFSSEEEVQAAVSTFN 231
Y+ NL SV + L+ F+E G + S V R S+G GFV F S E+ A++ N
Sbjct: 325 YLKNLDDSVDDDKLRELFAEYGTITSCKVMR-DSNGVSRGSGFVAFKSAEDASRALAEMN 383
Query: 232 NAELEGQPIRV 242
+ + +P+ V
Sbjct: 384 SKMVGSKPLYV 394
Score = 78.2 bits (191), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 88/174 (50%), Gaps = 12/174 (6%)
Query: 69 ARKLYVGNIPRTVTNDELAAMFADHGTVERAEVMFDKYTGRSRRFGFVTMSTPEEANAAI 128
A LYVG++ +V + +L +FA G V V D T RS + +V S+P +A A+
Sbjct: 39 ATSLYVGDLDVSVQDAQLFDVFAQVGGVVSVRVCRDVNTRRSLGYAYVNYSSPADAARAL 98
Query: 129 ESLNETEVGGRKIKVNVTESFLPNIDRSAPEPEPVFVDSQYKVYVGNLAKSVTTEMLKNF 188
E LN T + G+ I++ + + P++ +S +++ NL KS+ + L +
Sbjct: 99 EMLNFTPINGKPIRI-MYSNRDPSLRKSG----------TANIFIKNLDKSIDNKALYDT 147
Query: 189 FSEKGEVLSATVSRIPGTAKSKGYGFVTFSSEEEVQAAVSTFNNAELEGQPIRV 242
F G +LS V+ + +SKGYGFV + +E QAA+ N + + + V
Sbjct: 148 FCVFGNILSCKVA-TDASGESKGYGFVQYERDEAAQAAIDKLNGMLMNDKKVYV 200
Score = 72.0 bits (175), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 84/174 (48%), Gaps = 9/174 (5%)
Query: 72 LYVGNIPRTVTNDELAAMFADHGTVERAEVMFDKYTGRSRRFGFVTMSTPEEANAAIESL 131
+++ N+ +++ N L F G + +V D +G S+ +GFV E A AAI+ L
Sbjct: 130 IFIKNLDKSIDNKALYDTFCVFGNILSCKVATDA-SGESKGYGFVQYERDEAAQAAIDKL 188
Query: 132 NETEVGGRKIKVNVTESFLPNIDRSAPEPEPVFVDSQYKVYVGNLAKSVTTEMLKNFFSE 191
N + +K+ V P I + + P V VYV NL+++ T + LK F +
Sbjct: 189 NGMLMNDKKVYVG------PFIRKQERDNSPGQVKFN-NVYVKNLSENTTEDDLKEIFGK 241
Query: 192 KGEVLSATVSRIPGTAKSKGYGFVTFSSEEEVQAAVSTFNNAELEGQPIRVNKA 245
G + SA V R G +SK +GFV F S ++ AV N + + + V +A
Sbjct: 242 FGTITSAVVMR-EGDGRSKCFGFVNFESPDDAAQAVQELNGKKFDDKEWYVGRA 294
>Os11g0637700 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 467
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 57/190 (30%), Positives = 91/190 (47%), Gaps = 20/190 (10%)
Query: 66 EVAARKLYVGNIPRTVTNDELAAMFADHGTVERAEVMFDKYTGRSRRFGFVTMSTPEEAN 125
E A KL++G I D L F +G V A +M D+ TGR+R FGF+ + P A
Sbjct: 2 EADAGKLFIGGISWDTNEDRLREYFDKYGEVVEAVIMRDRATGRARGFGFIVFADPAVAE 61
Query: 126 AAIESLNETEVGGRKIKVNVTESFLPNIDRSA---------PEPEPVFVDSQYKVYVGNL 176
I + + + GR ++ + +P D+ A P P K++VG L
Sbjct: 62 RVI--MEKHMIDGRMVEA---KKAVPRDDQHALSKSGGSAHGSPGP---SRTKKIFVGGL 113
Query: 177 AKSVTTEMLKNFFSEKGEVLSATVSRIPGTAKSKGYGFVTFSSEEEVQAAV-STFNNAEL 235
A +VT + +F + G + V T + +G+GF+T+ SE+ V A+ TF+ EL
Sbjct: 114 ASTVTEADFRKYFEQFGTITDVVVMYDHNTQRPRGFGFITYDSEDAVDKALFKTFH--EL 171
Query: 236 EGQPIRVNKA 245
G+ + V +A
Sbjct: 172 NGKMVEVKRA 181
>Os08g0314800 Similar to Poly(A)-binding protein
Length = 660
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/174 (31%), Positives = 88/174 (50%), Gaps = 12/174 (6%)
Query: 69 ARKLYVGNIPRTVTNDELAAMFADHGTVERAEVMFDKYTGRSRRFGFVTMSTPEEANAAI 128
A LYVG++ +V + +L +F+ G+V V D T S + +V S+P +A A+
Sbjct: 38 ATSLYVGDLDVSVQDAQLFDVFSQVGSVVSVRVCRDVNTRLSLGYAYVNFSSPADAARAL 97
Query: 129 ESLNETEVGGRKIKVNVTESFLPNIDRSAPEPEPVFVDSQYKVYVGNLAKSVTTEMLKNF 188
E LN T + G+ I++ + N D S+ + +++ NL KS+ + L +
Sbjct: 98 EMLNFTPINGKPIRIMYS-----NRDPSSRK------SGAANIFIKNLDKSIDNKALYDT 146
Query: 189 FSEKGEVLSATVSRIPGTAKSKGYGFVTFSSEEEVQAAVSTFNNAELEGQPIRV 242
FS G +LS V+ + +SKGYGFV F EE Q A+S N L + + V
Sbjct: 147 FSVFGNILSCKVA-TEMSGESKGYGFVQFELEEAAQNAISKLNGMLLNDKKVYV 199
Score = 67.8 bits (164), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 84/184 (45%), Gaps = 22/184 (11%)
Query: 72 LYVGNIPRTVTNDELAAMFADHGTVERAEVMFDKYTGRSRRFGFVTMSTPEEANAAIESL 131
+YV N+ + T D L +F G + VM + G+SR FGFV P++A A+E L
Sbjct: 220 VYVKNLSESTTEDNLKEIFGKFGPITSVVVMREG-DGKSRCFGFVNFENPDDAARAVEDL 278
Query: 132 NETEVGGRKIKV-----------NVTESFLPNIDRSAPEPEPVFVDSQYKVYVGNLAKSV 180
N + ++ V + E F NI +A + + +Y+ NL S+
Sbjct: 279 NGKKFDDKEWYVCRAQKKSEREMELKEKFEKNIKEAADK------NQGTNLYLKNLDDSI 332
Query: 181 -TTEMLKNFFSEKGEVLSATVSR-IPGTAKSKGYGFVTFSSEEEVQAAVSTFNNAELEGQ 238
E LK F++ G + S V R + G SKG GFV F S E+ A+ N + +
Sbjct: 333 DDDEKLKEIFADFGTITSCKVMRDLNGV--SKGSGFVAFKSAEDASRALVAMNGKMIGSK 390
Query: 239 PIRV 242
P+ V
Sbjct: 391 PLYV 394
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 84/178 (47%), Gaps = 9/178 (5%)
Query: 68 AARKLYVGNIPRTVTNDELAAMFADHGTVERAEVMFDKYTGRSRRFGFVTMSTPEEANAA 127
A +++ N+ +++ N L F+ G + +V + +G S+ +GFV E A A
Sbjct: 125 GAANIFIKNLDKSIDNKALYDTFSVFGNILSCKVATE-MSGESKGYGFVQFELEEAAQNA 183
Query: 128 IESLNETEVGGRKIKVNVTESFLPNIDRSAPEPEPVFVDSQYKVYVGNLAKSVTTEMLKN 187
I LN + +K+ V F+ +R P F + VYV NL++S T + LK
Sbjct: 184 ISKLNGMLLNDKKVYVG---PFVRKQERENVSGNPKFNN----VYVKNLSESTTEDNLKE 236
Query: 188 FFSEKGEVLSATVSRIPGTAKSKGYGFVTFSSEEEVQAAVSTFNNAELEGQPIRVNKA 245
F + G + S V R G KS+ +GFV F + ++ AV N + + + V +A
Sbjct: 237 IFGKFGPITSVVVMR-EGDGKSRCFGFVNFENPDDAARAVEDLNGKKFDDKEWYVCRA 293
>Os08g0320100 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 350
Score = 76.6 bits (187), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 87/179 (48%), Gaps = 18/179 (10%)
Query: 71 KLYVGNIPRTVTNDELAAMFADHGTVERAEVMFDKYTGRSRRFGFVTMSTPEEANAAIES 130
K+++G +P+ T F +G + A +M D++T + R FGF+T + P + IE
Sbjct: 16 KIFIGGLPKDTTMGTFKEYFGKYGEIVDAVIMKDRFTQKPRGFGFITFADPAVVDRVIED 75
Query: 131 ---LNETEVGGRKIKVNVTESFLPNIDRSAPEPEPVFVDSQYKVYVGNLAKSVTTEMLKN 187
+N EV +IK + + P D K++VG L ++ + K
Sbjct: 76 NHVINGKEV---EIKRTIPKGAAPLKDFKTK-----------KIFVGGLPSALKEDEFKE 121
Query: 188 FFSEKGEVLSATVSRIPGTAKSKGYGFVTFSSEEEVQAAVSTFNNA-ELEGQPIRVNKA 245
FFS+ G+V+ + R T +S+G+GFV F +E+ V ++ N +L G + + KA
Sbjct: 122 FFSKFGKVVEHEIIRDHSTNRSRGFGFVVFDAEKTVDELLAKKGNMIDLNGSQVEIKKA 180
>Os03g0278500 Polyadenylate binding protein, human types 1, 2, 3, 4 family
protein
Length = 647
Score = 76.6 bits (187), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 92/176 (52%), Gaps = 14/176 (7%)
Query: 72 LYVGNIPRTVTNDELAAMFADHGTVERAEVMFDKYTGRSRRFGFVTMSTPEEANAAIESL 131
++V N+ V N L +F G + +V ++ G SR +GFV + E A+A+I++L
Sbjct: 128 VFVKNLNDLVDNVSLQELFCKFGDILSCKVAKNE-DGTSRGYGFVQFALQESADASIQNL 186
Query: 132 NETEVGGRKIKVNVTESFLPNIDRSAPEPEPVFVDSQY-KVYVGNLAKSVTTEMLKNFFS 190
N + GR++ V +F+ +RS D +Y +Y+ NL +T E++K FS
Sbjct: 187 NNSHFCGRQLHV---ATFIKKSERSTNN------DDKYTNLYMKNLDDDITEELIKLKFS 237
Query: 191 EKGEVLSATV-SRIPGTAKSKGYGFVTFSSEEEVQAAVSTFNNAELEGQPIRVNKA 245
+ G V+S + R GT SKG+GFV+F + E + A + N L + + V +A
Sbjct: 238 QYGLVISVKIMKRDDGT--SKGFGFVSFQNPESAKRAKESMNGMLLGSKTLYVARA 291
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 85/172 (49%), Gaps = 14/172 (8%)
Query: 72 LYVGNIPRTVTNDELAAMFADHGTVERAEVMFDKYTGRSRRFGFVTMSTPEEANAAIESL 131
LYVG++ +V + L +F GT+ V D T S R+G+V + +A A+E L
Sbjct: 40 LYVGDLHESVREEHLLEVFGKIGTLTSVRVCRDNATSNSLRYGYVNYLSQADAAIALEKL 99
Query: 132 NETEVGGRKIKVNVTESFLPNIDRSAPEPEPVFVDSQYKVYVGNLAKSVTTEMLKNFFSE 191
N + + + I+V + + P+ RS V+V NL V L+ F +
Sbjct: 100 NHSLILDKPIRV-MWSNRDPDARRSGVG----------NVFVKNLNDLVDNVSLQELFCK 148
Query: 192 KGEVLSATVSRI-PGTAKSKGYGFVTFSSEEEVQAAVSTFNNAELEGQPIRV 242
G++LS V++ GT S+GYGFV F+ +E A++ NN+ G+ + V
Sbjct: 149 FGDILSCKVAKNEDGT--SRGYGFVQFALQESADASIQNLNNSHFCGRQLHV 198
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 85/177 (48%), Gaps = 9/177 (5%)
Query: 72 LYVGNIPRTVTNDELAAMFADHGTVERAEVMFDKYTGRSRRFGFVTMSTPEEANAAIESL 131
LY+ N+ +T + + F+ +G V ++M + G S+ FGFV+ PE A A ES+
Sbjct: 218 LYMKNLDDDITEELIKLKFSQYGLVISVKIM-KRDDGTSKGFGFVSFQNPESAKRAKESM 276
Query: 132 NETEVGGRKIKVNVTE------SFLPNIDRSAPEPEPVFVDSQYKVYVGNLAKSVTTEML 185
N +G + + V + +L + E + + VY+ N+ V + L
Sbjct: 277 NGMLLGSKTLYVARAQKKAERKQYLQRLHEEK-RNEIITKSNGSNVYIKNINDEVGDDAL 335
Query: 186 KNFFSEKGEVLSATVSRIPGTAKSKGYGFVTFSSEEEVQAAVSTFNNAELEGQPIRV 242
+ F+E G + SA + R SKG+GFV +++ EE + AVS G+P+ V
Sbjct: 336 RERFNEFGNITSAKIMR-DEKGISKGFGFVCYNTPEEAKCAVSNMRGVMFYGKPLYV 391
>Os04g0504800 Similar to Poly(A)-binding protein
Length = 659
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 89/182 (48%), Gaps = 19/182 (10%)
Query: 72 LYVGNIPRTVTNDELAAMFADHGTVERAEVMFDKYTGRSRRFGFVTMSTPEEANAAIESL 131
++V N+ + T ++L +F +G + A +M G+SR FGF+ +P++A A+E L
Sbjct: 220 VFVKNLSESTTKEDLVKIFGAYGNITSAVIMVG-MDGKSRCFGFINFKSPDDAARAVEEL 278
Query: 132 NETEVG------GRKIK-----VNVTESFLPNIDRSAPEPEPVFVDSQYKVYVGNLAKSV 180
N ++ GR K + + F ++ +A + + + +Y+ NL S+
Sbjct: 279 NGKKINDKEWYVGRAQKKSEREIELKRRFEQSMKDAADKYQGL------NLYMKNLDDSI 332
Query: 181 TTEMLKNFFSEKGEVLSATVSRIPGTAKSKGYGFVTFSSEEEVQAAVSTFNNAELEGQPI 240
+ L FS G++ S + R SKG GFV FS+ EE A++ N + G+P+
Sbjct: 333 GDDQLCELFSNYGKITSCKIMR-DANGVSKGSGFVAFSTREEASQALTEMNGKMISGKPL 391
Query: 241 RV 242
V
Sbjct: 392 YV 393
Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 86/173 (49%), Gaps = 12/173 (6%)
Query: 70 RKLYVGNIPRTVTNDELAAMFADHGTVERAEVMFDKYTGRSRRFGFVTMSTPEEANAAIE 129
+ LYVG++ +VT+ +L +F+ G V V D + RS + +V + P +A A+E
Sbjct: 39 QSLYVGDLEASVTDSQLYELFSQAGQVMSVRVCRDISSRRSLGYAYVNFNNPVDAARALE 98
Query: 130 SLNETEVGGRKIKVNVTESFLPNIDRSAPEPEPVFVDSQYKVYVGNLAKSVTTEMLKNFF 189
LN + G+ I+V + P+ RS +++ NL K++ + L + F
Sbjct: 99 LLNFAPLNGKPIRVMYSNRD-PSSRRSG----------SANIFIKNLDKAIDHKTLHDTF 147
Query: 190 SEKGEVLSATVSRIPGTAKSKGYGFVTFSSEEEVQAAVSTFNNAELEGQPIRV 242
S G +LS V+ +SKG+GFV + E Q+A+ + N + +P+ V
Sbjct: 148 SAFGNILSCKVA-TDEMGQSKGFGFVQYDKGEAAQSAIKSLNGMLINDKPVYV 199
>Os08g0520300 Similar to Oligouridylate binding protein
Length = 447
Score = 75.1 bits (183), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 80/177 (45%), Gaps = 14/177 (7%)
Query: 69 ARKLYVGNIPRTVTNDELAAMFADHGTVERAEVMFDKYTGRSRRFGFVTMSTPEEANAAI 128
R +YVGN+ VT L +F G VER +++ + + FGFV A AI
Sbjct: 72 CRSVYVGNVHPNVTESLLIEVFQSSGLVERCKLIRKEKS----SFGFVDYYDRRSAALAI 127
Query: 129 ESLNETEVGGRKIKVNVTESFLPNIDRSAPEPEPVFVDSQYKVYVGNLAKSVTTEMLKNF 188
+L+ + G+ IKVN + D S + ++VG+L+ V L
Sbjct: 128 MTLHGRHICGQAIKVNWAYASTQREDTSG----------HFHIFVGDLSSEVNDATLYAC 177
Query: 189 FSEKGEVLSATVSRIPGTAKSKGYGFVTFSSEEEVQAAVSTFNNAELEGQPIRVNKA 245
FS A V T +S+GYGFV+F +++E + A++ L + IR N A
Sbjct: 178 FSAYPSCSDARVMWDNKTGRSRGYGFVSFRNQQEAETAITEMTGKWLGSRQIRCNWA 234
>Os04g0449900 Similar to RNA Binding Protein 47
Length = 387
Score = 74.7 bits (182), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 84/185 (45%), Gaps = 23/185 (12%)
Query: 70 RKLYVGNIPRTVTNDELAAMFADHGTVERAEVMFDKYTGRSRRFGFVTMSTPEEANAAIE 129
+ ++VG++ + + L + F G V +V+ ++ TG+S +GFV + A A++
Sbjct: 65 KTIWVGDLQYWMDENYLHSCFGPSGEVVTIKVIRNRQTGQSEGYGFVEFYSHGSAEKALQ 124
Query: 130 SLNETEVGGRKIKVNVTESFLPNIDRSAPEPEPVF--------VDSQYKVYVGNLAKSVT 181
N T +PN DR + V S Y ++VG+LA VT
Sbjct: 125 --------------NFTGHVMPNTDRPFKLNWASYSMGEKRSEVASDYSIFVGDLAADVT 170
Query: 182 TEMLKNFFSEKGE-VLSATVSRIPGTAKSKGYGFVTFSSEEEVQAAVSTFNNAELEGQPI 240
EML F+ K V A V T +S+GYGFV F + + A++ N A +PI
Sbjct: 171 DEMLMELFANKYRSVKGAKVIIDANTGRSRGYGFVRFGDDNDKSHAMTEMNGAYCSTRPI 230
Query: 241 RVNKA 245
R+ A
Sbjct: 231 RIGPA 235
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 97/190 (51%), Gaps = 9/190 (4%)
Query: 57 SSSVLEAPEEVAAR-KLYVGNIPRTVTNDELAAMFAD-HGTVERAEVMFDKYTGRSRRFG 114
S S+ E EVA+ ++VG++ VT++ L +FA+ + +V+ A+V+ D TGRSR +G
Sbjct: 144 SYSMGEKRSEVASDYSIFVGDLAADVTDEMLMELFANKYRSVKGAKVIIDANTGRSRGYG 203
Query: 115 FVTMSTPEEANAAIESLNETEVGGRKIKVNVTESFLPNIDRSAPEPEPVFVDSQYK-VYV 173
FV + + A+ +N R I++ + D + P DS + VYV
Sbjct: 204 FVRFGDDNDKSHAMTEMNGAYCSTRPIRIGPATPRRSSGDSGSSTPGHSDGDSTNRTVYV 263
Query: 174 GNLAKSVTTEMLKNFFSEKGEVLSATVSRIPGTAKSKGYGFVTFSSEEEVQAAVSTFNNA 233
G L +V+ + L+ F++ G+V S +IP K GFV F S + + A+ N +
Sbjct: 264 GGLDPNVSEDELRKAFAKYGDVASV---KIP---LGKQCGFVQFVSRTDAEEALQGLNGS 317
Query: 234 ELEGQPIRVN 243
+ Q +R++
Sbjct: 318 VIGKQAVRLS 327
>Os09g0123200 Paraneoplastic encephalomyelitis antigen family protein
Length = 637
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 82/162 (50%), Gaps = 11/162 (6%)
Query: 71 KLYVGNIPRTVTNDELAAMFADHGTVERAEVMFDKYTGRSRRFGFVTMSTPEEANAAIES 130
KL++G++PRT T D++ +F +HG V ++ D+ TG + FV +T EEA AI +
Sbjct: 22 KLFIGSVPRTATEDDVRPLFEEHGDVVEVALIKDRKTGEQQGCCFVKYATSEEAERAIRA 81
Query: 131 L-NETEVGGRKIKVNVTESFLPNIDRSAPEPEPVFVDSQYKVYVGNLAKSVTTEMLKNFF 189
L N+ + G + V + A E +K++V +L K T + ++ F
Sbjct: 82 LHNQYTLPGAMGPIQVRYADGERERHGAIE---------HKLFVASLNKQATAKEIEEIF 132
Query: 190 SEKGEVLSATVSRIPGTAKSKGYGFVTFSSEEEVQAAVSTFN 231
+ G V + + G +S+G GFV FSS E AA+S +
Sbjct: 133 APYGHVEDVYIMKD-GMRQSRGCGFVKFSSREPALAAMSALS 173
>Os06g0566100 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 285
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 75/146 (51%), Gaps = 14/146 (9%)
Query: 102 MFDKYTGRSRRFGFVTMSTPEEANAAIESLNETEVGGRKIKVNVTESFLPNIDRSAPEPE 161
M DK+T R FGFVT S P + ++ +E + GR ++V R+ P E
Sbjct: 1 MKDKHTKMPRGFGFVTFSDPSVIDKVLQ--DEHTIDGRTVEVK----------RTVPREE 48
Query: 162 PVFVDS--QYKVYVGNLAKSVTTEMLKNFFSEKGEVLSATVSRIPGTAKSKGYGFVTFSS 219
D K++VG + S+T + LK FS G+V+ + GT +S+G+GFVTF +
Sbjct: 49 MSSKDGPKTRKIFVGGIPPSLTEDKLKEHFSSYGKVVEHQIMLDHGTGRSRGFGFVTFEN 108
Query: 220 EEEVQAAVSTFNNAELEGQPIRVNKA 245
E+ V+ +S +L G+ + + KA
Sbjct: 109 EDAVERVMSEGRMHDLAGKQVEIKKA 134
>Os03g0174100 Similar to RNA Binding Protein 45
Length = 416
Score = 72.0 bits (175), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 89/182 (48%), Gaps = 9/182 (4%)
Query: 65 EEVAARKLYVGNIPRTVTNDELAAMFADHGTVERAEVMFDKYTGRSRRFGFVTMSTPEEA 124
EEV R L++G++ + L FA G ++ +++ +K T +GF+ + E A
Sbjct: 13 EEV--RTLWIGDLQYWADENYLYNCFAHTGELQSVKIIRNKLTSLPEGYGFIEFISHEVA 70
Query: 125 NAAIESLNETEVGGRKIKVNVTESFLPNIDRSAPEPEPVFVDSQYKVYVGNLAKSVTTEM 184
+++ N T++ G + + + + +R P+ P + ++VG+LA VT +
Sbjct: 71 EKVLQTYNGTQMPGTEHTFRLNWASFSSGERR-PDAGP-----DHSIFVGDLAPDVTDYL 124
Query: 185 LKNFFS-EKGEVLSATVSRIPGTAKSKGYGFVTFSSEEEVQAAVSTFNNAELEGQPIRVN 243
L+ F V A V P T +SKGYGFV F+ E E A++ N +P+R++
Sbjct: 125 LQETFRVSYPSVKGAKVVTDPNTGRSKGYGFVKFADENEKNRAMTEMNGMYCSTRPMRIS 184
Query: 244 KA 245
A
Sbjct: 185 AA 186
>Os03g0569900 Similar to RNA Binding Protein 45
Length = 402
Score = 71.2 bits (173), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 56/182 (30%), Positives = 91/182 (50%), Gaps = 19/182 (10%)
Query: 72 LYVGNIPRTVTNDELAAMF-ADHGTVERAEVMFDKYTGRSRRFGFVTMSTPEEANAAIES 130
++VG++ VT+ L F A + +V+ A+V+FD+ TGRS+ +GFV +E A+
Sbjct: 162 IFVGDLASDVTDLILQDTFKAHYQSVKGAKVVFDRSTGRSKGYGFVKFGDLDEQTRAMTE 221
Query: 131 LNETEVGGRKIKVNVTESFLPNIDRSAPEPEPVFVDSQ----------YKVYVGNLAKSV 180
+N R +++ S NI +P + ++Q V+VG L SV
Sbjct: 222 MNGQYCSSRPMRIGPA-SNKKNIGGQQ-QPSATYQNTQGTDSDSDPNNTTVFVGGLDPSV 279
Query: 181 TTEMLKNFFSEKGEVLSATVSRIPGTAKSKGYGFVTFSSEEEVQAAVSTFNNAELEGQPI 240
T E+LK FS GE++ +IP K GFV +S+ + A+ N ++L GQ I
Sbjct: 280 TDEVLKQAFSPYGELVYV---KIP---VGKRCGFVQYSNRASAEEAIRMLNGSQLGGQSI 333
Query: 241 RV 242
R+
Sbjct: 334 RL 335
>Os05g0114500 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 548
Score = 71.2 bits (173), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 90/186 (48%), Gaps = 8/186 (4%)
Query: 60 VLEAPEEVAARKLYVGNIPRTVTNDELAAMFADHGTVERAEVMFDKYTGRSRRFGFVTMS 119
VL E A+K+YVG IP + D++ + F G++ + M +G+ R +T
Sbjct: 164 VLSEESEKNAKKVYVGGIPYYSSEDDIRSFFEACGSITSVDCMTFPESGKFRGIAILTFK 223
Query: 120 TPEEANAAIESLNETEVGGRKIKVNVTESFLPNIDRSAPEPEPVFVDSQYKVYVGNLAKS 179
T A A+ +L+ ++GG +K+ +S R + P ++ +VYVGNLA
Sbjct: 224 TDAAAQRAL-ALDGADMGGFFLKIQPYKSV-----REKEDFAPKMIEGYNRVYVGNLAWD 277
Query: 180 VTTEMLKNFFSEKGEVLSATVSRIPGTAKSKGYGFVTFSSEEEVQAAVSTFNNAELEGQP 239
+T + LK FFS+ ++ S T KGY V FS V A+ + ++G+P
Sbjct: 278 ITEDDLKKFFSD-CKISSIRFGTDKETGDFKGYVHVDFSEGTSVAVAMK-LDQKVIKGRP 335
Query: 240 IRVNKA 245
+R+ A
Sbjct: 336 VRIRCA 341
>Os01g0766700
Length = 345
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 88/175 (50%), Gaps = 5/175 (2%)
Query: 71 KLYVGNIPRTVTNDELAAMFADHGTVERAEVMFDKYTGRSRRFGFVTMSTPEEANAAIES 130
K++VG +P + EL A F+ GTV +K TG +R F FV P++A AAI +
Sbjct: 30 KVFVGGVPLGTSESELRAHFSRFGTVAFVGAPKNKQTGAARGFAFVQFVNPDDAAAAIAA 89
Query: 131 LNETEVGGRKIKVNVTESFLPNIDRSAPEPEPVFVDSQYKVYVGNLAKSVTTEMLKNFFS 190
+ V I+ + L + SA P+ D + K++VG L S T + LK +F+
Sbjct: 90 GPDRNV----IRGTTMDIKLAQLKPSAGGPQLSPGDQKRKIFVGGLPVSATEKKLKEYFN 145
Query: 191 EKGEVLSATVSRIPGTAKSKGYGFVTFSSEEEVQAAVSTFNNAELEGQPIRVNKA 245
+ GEV A V T +G+GF+ F+SEE A+ + L GQ + V+ A
Sbjct: 146 KFGEVNRAIVVIDLNTKMPRGFGFIQFASEESTARALKK-DKHFLCGQWVEVSLA 199
>Os07g0584500 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 472
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 91/191 (47%), Gaps = 22/191 (11%)
Query: 66 EVAARKLYVGNIPRTVTNDELAAMFADHGTVERAEVMFDKYTGRSRRFGFVTMSTPEEAN 125
E + KL+VG I D L F+ G V A +M D+ TGR+R FGFV + +
Sbjct: 2 EADSGKLFVGGISWETDEDRLREYFSRFGEVTEAVIMRDRNTGRARGFGFVVFT--DAGV 59
Query: 126 AAIESLNETEVGGRKIKVNVTESFLPNIDRS-----------APEPEPVFVDSQYKVYVG 174
A ++++ + GR ++ + +P D+S +P P K++VG
Sbjct: 60 AERVTMDKHMIDGRMVEA---KKAVPRDDQSITSKNNGSSIGSPGP-----GRTRKIFVG 111
Query: 175 NLAKSVTTEMLKNFFSEKGEVLSATVSRIPGTAKSKGYGFVTFSSEEEVQAAVSTFNNAE 234
LA +VT + +F + G + V T + +G+GF+T+ SE+ V A+ N E
Sbjct: 112 GLASNVTEVEFRRYFEQFGVITDVVVMYDHNTQRPRGFGFITYDSEDAVDKALHK-NFHE 170
Query: 235 LEGQPIRVNKA 245
L G+ + V +A
Sbjct: 171 LNGKMVEVKRA 181
>Os01g0945800 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 363
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 88/179 (49%), Gaps = 16/179 (8%)
Query: 69 ARKLYVGNIPRTVTNDELAAMFADHGTVERAEVMFDKYTGRSRRFGFVTMSTPEEANAAI 128
A KL V IP V + L G ++ VM ++ +GRSR FG+VT S+ ++A +
Sbjct: 2 ATKLVVLGIPWDVDTEGLREYMGKFGPLDDCVVMKERSSGRSRGFGYVTFSSADDAKNVL 61
Query: 129 ESLNETEVGGRKIKVNVTESFLPNIDRSAPEPEPVFVDSQY--KVYVGNLAKSVTTEMLK 186
E E +G R ++V + + P+ E S+ +++V + +SV M +
Sbjct: 62 EC--EHVLGNRTLEVKI----------ATPKEEMKSQGSKKATRIFVARIPQSVDESMFR 109
Query: 187 NFFSEKGEVLSATVSRIPGTAKSKGYGFVTFSSEEEVQAAVSTFNNAELEGQPIRVNKA 245
F GE+ + + G+ +G GF+TF S E V + + ++ EL+G + V++A
Sbjct: 110 RHFEAYGEITDLYMPKEHGSKGHRGIGFITFQSAESVDSIMQ--DSHELDGTTVVVDRA 166
>Os03g0836200 Similar to RNA-binding protein RZ-1
Length = 205
Score = 68.2 bits (165), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 52/92 (56%)
Query: 66 EVAARKLYVGNIPRTVTNDELAAMFADHGTVERAEVMFDKYTGRSRRFGFVTMSTPEEAN 125
+V + ++GN+ + T++ L F G + A+V+FDKY+GRSR FGFVT +
Sbjct: 3 DVEEYRCFIGNLSWSTTDESLKDAFGKFGNLTEAKVVFDKYSGRSRGFGFVTFDEKKAME 62
Query: 126 AAIESLNETEVGGRKIKVNVTESFLPNIDRSA 157
AIE +N ++ GR I V+ + P DR+
Sbjct: 63 DAIEGMNGLDLDGRAITVDKAQPQGPGRDRNG 94
>Os05g0223300 Similar to RNA-binding protein
Length = 102
Score = 68.2 bits (165), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 71 KLYVGNIPRTVTNDELAAMFADHGTVERAEVMFDKYTGRSRRFGFVTMSTPEEANAAIES 130
++YVGN+P +V L FAD+G + AE+ +D GR R FGFV E NAAI
Sbjct: 19 RVYVGNLPYSVDEQTLMDYFADYGAIS-AEIAWDSEMGRPRGFGFVNFEDNESVNAAIHG 77
Query: 131 LNETEVGGRKIKV 143
+N ++GGRK+ V
Sbjct: 78 MNGQDIGGRKVTV 90
>Os12g0502200 Similar to Low temperature-responsive RNA-binding protein
Length = 258
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 52/79 (65%)
Query: 67 VAARKLYVGNIPRTVTNDELAAMFADHGTVERAEVMFDKYTGRSRRFGFVTMSTPEEANA 126
+++ KL+VG + L FA++G V A+++ D+ TGRSR FGF+T ++ EEA+A
Sbjct: 28 MSSSKLFVGGLSYGTDEQSLRDTFANYGQVIEAKIINDRETGRSRGFGFITYASSEEASA 87
Query: 127 AIESLNETEVGGRKIKVNV 145
AI +L+ ++ GR I+VN
Sbjct: 88 AITALDGKDLDGRNIRVNT 106
>AK111046
Length = 231
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 50/80 (62%)
Query: 166 DSQYKVYVGNLAKSVTTEMLKNFFSEKGEVLSATVSRIPGTAKSKGYGFVTFSSEEEVQA 225
D +Y+ +VG LA + L+ FS GE+L + + T +S+G+GFVTFSSE+ ++
Sbjct: 5 DVEYRCFVGGLAWATDDRSLEAAFSTYGEILDSKIINDRETGRSRGFGFVTFSSEQSMRD 64
Query: 226 AVSTFNNAELEGQPIRVNKA 245
A+ N EL+G+ I VN+A
Sbjct: 65 AIEGMNGKELDGRNITVNEA 84
>Os03g0670700 Similar to Glycine-rich RNA-binding, abscisic acid-inducible
protein
Length = 196
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 50/80 (62%)
Query: 166 DSQYKVYVGNLAKSVTTEMLKNFFSEKGEVLSATVSRIPGTAKSKGYGFVTFSSEEEVQA 225
D +Y+ +VG LA + L+ FS GE+L + + T +S+G+GFVTFSSE+ ++
Sbjct: 5 DVEYRCFVGGLAWATDDRSLEAAFSTYGEILDSKIINDRETGRSRGFGFVTFSSEQSMRD 64
Query: 226 AVSTFNNAELEGQPIRVNKA 245
A+ N EL+G+ I VN+A
Sbjct: 65 AIEGMNGKELDGRNITVNEA 84
>Os07g0602600 Similar to RNA binding protein
Length = 238
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 49/76 (64%)
Query: 170 KVYVGNLAKSVTTEMLKNFFSEKGEVLSATVSRIPGTAKSKGYGFVTFSSEEEVQAAVST 229
K++VG L+ + LK+ FS G+VL A + T KSKGYGF+T++S EE AAV+
Sbjct: 32 KLFVGGLSYATDDTTLKDVFSHYGDVLEARIIIDRDTGKSKGYGFITYTSSEEAAAAVTA 91
Query: 230 FNNAELEGQPIRVNKA 245
+ +L+G+ +RV+ A
Sbjct: 92 MDGKDLQGRIVRVSTA 107
>Os05g0223500
Length = 102
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Query: 71 KLYVGNIPRTVTNDELAAMFADHGTVERAEVMFDKYTGRSRRFGFVTMSTPEEANAAIES 130
++YVGN+P + + L FA++G + AE+ +D GRSR FGFV E NAAI+
Sbjct: 19 RVYVGNLPFSANDRSLKDSFANYGAIS-AEIAWDSVMGRSRGFGFVNFEDSESVNAAIQG 77
Query: 131 LNETEVGGRKIKV 143
+N ++GGR + V
Sbjct: 78 MNGQDIGGRNVTV 90
>Os12g0632000 Similar to Glycine-rich RNA-binding protein 1 (Fragment)
Length = 162
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 50/80 (62%)
Query: 166 DSQYKVYVGNLAKSVTTEMLKNFFSEKGEVLSATVSRIPGTAKSKGYGFVTFSSEEEVQA 225
D +Y+ +VG LA + L+ FS GE+L + + T +S+G+GFVTFSSE+ ++
Sbjct: 5 DVEYRCFVGGLAWATDDRSLEAAFSTFGEILESKIINDRETGRSRGFGFVTFSSEQAMRD 64
Query: 226 AVSTFNNAELEGQPIRVNKA 245
A+ N EL+G+ I VN+A
Sbjct: 65 AIEGMNGKELDGRNITVNEA 84
>Os12g0136200 WD40-like domain containing protein
Length = 515
Score = 64.3 bits (155), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 78/173 (45%), Gaps = 11/173 (6%)
Query: 68 AARKLYVGNIPRTVTNDELAAMFADHGT-VERAEVMFDKYTGRSRRFGFVTMSTPEEANA 126
A KL++GN+P + T+D+ + + G V +A++M R+R +GFV E N
Sbjct: 200 AKNKLFIGNVPHSWTDDDFRKVVEEVGPGVLKADLMKVSSANRNRGYGFV-----EYYNH 254
Query: 127 AIESLNETEVGGRKIKVNVTESFLPNIDRSAPEPEPVFVDSQYK-VYVGNLAKSVTTEML 185
A E+ K+ +S P + + P+ SQ K VYV NL K+VT L
Sbjct: 255 ACAEYARQEMSSPTFKL---DSNAPTVSWADPKNNDSASTSQVKSVYVKNLPKNVTQAQL 311
Query: 186 KNFFSEKGEVLSATVSRIPGTAKSKGYGFVTFSSEEEVQAAVSTFNNAELEGQ 238
K F GE+ + G ++ YGFV F A+ EL+GQ
Sbjct: 312 KRLFEHHGEIEKVVLPPSRGGHDNR-YGFVHFKDRSMAMRALQNTERYELDGQ 363
>Os07g0187300 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 308
Score = 64.3 bits (155), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 46/76 (60%)
Query: 170 KVYVGNLAKSVTTEMLKNFFSEKGEVLSATVSRIPGTAKSKGYGFVTFSSEEEVQAAVST 229
+++VG L+ T L+ FSE G+V+ V T +S+G+GFVTFS V AA+
Sbjct: 8 RIFVGGLSWDTTERTLERAFSEYGKVIETQVVLERDTGRSRGFGFVTFSEPRAVDAAIRG 67
Query: 230 FNNAELEGQPIRVNKA 245
+N EL+G+ I VNKA
Sbjct: 68 MHNGELDGRTISVNKA 83
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.312 0.127 0.346
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,106,897
Number of extensions: 214066
Number of successful extensions: 1097
Number of sequences better than 1.0e-10: 50
Number of HSP's gapped: 1019
Number of HSP's successfully gapped: 71
Length of query: 245
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 147
Effective length of database: 11,918,829
Effective search space: 1752067863
Effective search space used: 1752067863
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 154 (63.9 bits)