Os12g0632000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Glycine-rich RNA-binding protein 1 (Fragment).
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Os12g0632000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Glycine-rich RNA-binding protein 1 (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 74.66 | 0.406 | 16.7 | -0.39 | 0.787 | 0.423 | 0.706 | -4.86 | -2.8 | 17.9 | 25.7 | 98 | -- | -- |
| 80.39 | 0.418 | 16.6 | 0.137 | 0.787 | -0.152 | 0.0821 | -- | -2.65 | 17.5 | 22.87 | 3272 | -- | -- |
| 75.73 | 0.405 | 16.7 | -0.346 | 0.786 | 0.404 | -- | -4.38 | -2.78 | 17.8 | 25.8 | 95 | -- | -- |
| 79.93 | 0.419 | 16.6 | 0.155 | 0.878 | -0.446 | -- | -- | -2.69 | 17.4 | 29.88 | 1978 | -- | -- |
| 95.89 | 0.456 | 16.7 | -0.6 | -- | 1.11 | -- | -5.22 | -2.84 | -- | 25.8 | 372 | -- | -- |
| 81.6 | 0.423 | 16.6 | 0.131 | 0.831 | -- | 0.141 | -- | -2.67 | 17.6 | -- | -- | -- | -- |
| 81.64 | 0.423 | 16.6 | 0.131 | 0.832 | -- | -- | -- | -2.67 | 17.6 | -- | -- | -- | -- |
| 104.88 | 0.477 | 16.6 | 0.00307 | -- | 0.678 | -- | -- | -2.73 | -- | 25.36 | 373 | -- | -- |
| 80.56 | 0.42 | 16.6 | -- | 0.873 | -0.42 | -- | -- | -2.7 | 17.5 | 29.88 | 1978 | -- | -- |
| 117.62 | 0.507 | 16.6 | 0.103 | -- | -- | -- | -- | -2.69 | -- | -- | -- | -- | -- |
| 82.09 | 0.424 | 16.6 | -- | 0.83 | -- | -- | -- | -2.69 | 17.6 | -- | -- | -- | -- |
| 104.85 | 0.477 | 16.6 | -- | -- | 0.677 | -- | -- | -2.72 | -- | 25.6 | 384 | -- | -- |
| 117.9 | 0.507 | 16.6 | -- | -- | -- | -- | -- | -2.7 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 59.12 | temperature | 25 | 720 | < th | dose independent | rect. | 21 | 7 |
| 2 | 59.45 | temperature | 25 | 720 | > th | dose independent | rect. | 22 | 4 |
| 3 | 59.50 | temperature | 25 | 720 | > th | dose independent | rect. | 21 | 6 |
| 14 | 59.98 | temperature | 25 | 270 | > th | dose independent | rect. | 24 | 6 |
| 15 | 60.20 | temperature | 25 | 720 | < th | dose independent | rect. | 23 | 3 |
| 19 | 60.46 | humidity | 80 | 4320 | < th | dose dependent | rect. | 22 | 2 |
| 23 | 60.54 | temperature | 25 | 720 | > th | dose dependent | rect. | 22 | 4 |
| 33 | 60.94 | temperature | 25 | 1440 | < th | dose independent | rect. | 24 | 1 |
| 72 | 61.98 | humidity | 80 | 4320 | < th | dose independent | rect. | 22 | 3 |
| 97 | 62.89 | temperature | 25 | 270 | > th | dose dependent | rect. | 24 | 6 |
| 99 | 62.92 | humidity | 80 | 4320 | < th | dose independent | rect. | 23 | 1 |
| 119 | 63.27 | humidity | 80 | 4320 | > th | dose independent | rect. | 23 | 2 |
| 146 | 63.86 | humidity | 80 | 4320 | > th | dose independent | rect. | 22 | 4 |
| 197 | 64.83 | temperature | 25 | 720 | > th | dose independent | sin | 12 | NA |
| 236 | 65.79 | temperature | 25 | 720 | < th | dose independent | sin | 11 | NA |
| 239 | 65.81 | temperature | 25 | 270 | > th | dose dependent | rect. | 2 | 2 |
| 308 | 66.93 | temperature | 25 | 10 | > th | dose independent | rect. | 22 | 9 |
| 433 | 68.64 | temperature | 25 | 720 | > th | dose dependent | rect. | 7 | 2 |
| 474 | 69.12 | temperature | 25 | 10 | > th | dose independent | rect. | 24 | 7 |
| 524 | 69.65 | wind | 3 | 1440 | < th | dose independent | rect. | 2 | 1 |
| 543 | 69.78 | wind | 3 | 1440 | > th | dose independent | rect. | 2 | 1 |
| 554 | 69.86 | temperature | 20 | 10 | > th | dose dependent | rect. | 22 | 10 |
| 597 | 70.21 | temperature | 25 | 720 | > th | dose independent | rect. | 7 | 1 |
| 662 | 70.75 | atmosphere | 1005 | 270 | > th | dose dependent | rect. | 24 | 4 |
| 669 | 70.79 | temperature | 20 | 10 | > th | dose dependent | rect. | 24 | 7 |
| 687 | 70.97 | atmosphere | 1005 | 10 | > th | dose dependent | rect. | 24 | 7 |
| 711 | 71.10 | temperature | 25 | 90 | > th | dose independent | rect. | 4 | 2 |
| 722 | 71.18 | temperature | 25 | 270 | > th | dose dependent | rect. | 4 | 1 |
| 811 | 71.81 | radiation | 40 | 720 | < th | dose dependent | rect. | 16 | 1 |
| 835 | 72.00 | atmosphere | 1005 | 270 | > th | dose dependent | rect. | 2 | 1 |
| 849 | 72.09 | wind | 1 | 720 | > th | dose independent | rect. | 5 | 14 |
| 882 | 72.33 | humidity | 80 | 4320 | < th | dose independent | sin | 10 | NA |
| 884 | 72.35 | temperature | 25 | 10 | > th | dose independent | sin | 10 | NA |
| 896 | 72.40 | wind | 5 | 1440 | < th | dose dependent | rect. | 2 | 1 |
| 915 | 72.52 | temperature | 10 | 270 | > th | dose dependent | rect. | 19 | 12 |
| 925 | 72.60 | humidity | 80 | 4320 | > th | dose independent | sin | 10 | NA |
| 931 | 72.62 | temperature | 25 | 10 | > th | dose independent | rect. | 4 | 3 |
| 935 | 72.66 | temperature | 25 | 90 | < th | dose independent | sin | 11 | NA |
| 986 | 72.84 | wind | 1 | 720 | > th | dose independent | rect. | 7 | 10 |