Os01g0945800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : RNA-binding region RNP-1 (RNA recognition motif) domain containing protein.
FiT-DB / Search/ Help/ Sample detail
|
Os01g0945800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : RNA-binding region RNP-1 (RNA recognition motif) domain containing protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 10.1 | 0.149 | 12.3 | -0.571 | 0.165 | 0.0258 | 0.0598 | -1.77 | -0.193 | 10.7 | 24.07 | 3010 | -- | -- |
| 10.84 | 0.153 | 12.2 | 0.177 | 0.164 | -0.273 | 0.0448 | -- | 0.0467 | 10.8 | 20 | 47520 | -- | -- |
| 10.11 | 0.148 | 12.3 | -0.58 | 0.164 | 0.0309 | -- | -1.79 | -0.194 | 10.7 | 24.19 | 2980 | -- | -- |
| 10.44 | 0.151 | 12.2 | 0.112 | 0.149 | -0.248 | -- | -- | 0.0347 | 10.8 | 28.98 | 43357 | -- | -- |
| 11.57 | 0.158 | 12.3 | -0.471 | -- | -0.0564 | -- | -1.53 | -0.166 | -- | 24.14 | 2450 | -- | -- |
| 12.16 | 0.163 | 12.2 | -0.119 | 0.165 | -- | 0.0931 | -- | -0.0834 | 11.1 | -- | -- | -- | -- |
| 12.2 | 0.164 | 12.2 | -0.115 | 0.165 | -- | -- | -- | -0.0831 | 11 | -- | -- | -- | -- |
| 11.93 | 0.161 | 12.2 | 0.14 | -- | -0.273 | -- | -- | 0.0396 | -- | 28.73 | 42593 | -- | -- |
| 10.73 | 0.153 | 12.2 | -- | 0.16 | -0.19 | -- | -- | -0.00704 | 11 | 29.72 | 47520 | -- | -- |
| 13.89 | 0.174 | 12.2 | -0.119 | -- | -- | -- | -- | -0.0843 | -- | -- | -- | -- | -- |
| 12.55 | 0.166 | 12.2 | -- | 0.166 | -- | -- | -- | -0.0702 | 11.1 | -- | -- | -- | -- |
| 12.01 | 0.161 | 12.2 | -- | -- | -0.219 | -- | -- | 0.0125 | -- | 29 | 35496 | -- | -- |
| 14.26 | 0.176 | 12.2 | -- | -- | -- | -- | -- | -0.0711 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 9.65 | humidity | 70.0 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 2 | 9.67 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 10 | 4 |
| 3 | 9.67 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 10 | 4 |
| 4 | 9.69 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 10 | 4 |
| 10 | 9.73 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 8 | 6 |
| 12 | 9.73 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 8 | 6 |
| 17 | 9.73 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 17 | 9 |
| 23 | 9.75 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 20 | 6 |
| 27 | 9.76 | humidity | 70.0 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 33 | 9.77 | wind | 5.0 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 45 | 9.79 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 8 | 1 |
| 46 | 9.79 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 6 | 1 |
| 51 | 9.80 | temperature | 25.0 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 63 | 9.81 | wind | 5.0 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 64 | 9.81 | temperature | 25.0 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 76 | 9.81 | humidity | 70.0 | 43200 | < th | dose independent | rect. | 17 | 12 |
| 93 | 9.82 | humidity | 70.0 | 43200 | < th | dose independent | rect. | 17 | 10 |
| 105 | 9.83 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 4 | 4 |
| 122 | 9.85 | temperature | 25.0 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 126 | 9.85 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 4 | 4 |
| 128 | 9.85 | temperature | 25.0 | 43200 | > th | dose independent | rect. | 10 | 10 |
| 133 | 9.85 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 17 | 14 |
| 134 | 9.86 | temperature | 25.0 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 141 | 9.86 | temperature | 25.0 | 43200 | < th | dose independent | rect. | 10 | 10 |
| 162 | 9.87 | wind | 5.0 | 43200 | > th | dose independent | rect. | 21 | 12 |
| 167 | 9.87 | humidity | 70.0 | 43200 | > th | dose independent | rect. | 18 | 12 |
| 171 | 9.87 | temperature | 20.0 | 43200 | > th | dose dependent | rect. | 17 | 1 |
| 184 | 9.88 | temperature | 25.0 | 43200 | > th | dose independent | rect. | 7 | 6 |
| 185 | 9.88 | temperature | 25.0 | 43200 | < th | dose independent | rect. | 7 | 6 |
| 189 | 9.88 | wind | 5.0 | 43200 | > th | dose independent | rect. | 1 | 8 |
| 194 | 9.88 | humidity | 70.0 | 43200 | > th | dose independent | rect. | 18 | 8 |
| 215 | 9.88 | temperature | 25.0 | 43200 | < th | dose independent | rect. | 7 | 12 |
| 233 | 9.89 | temperature | 25.0 | 43200 | > th | dose independent | sin | 21 | NA |
| 236 | 9.89 | temperature | 25.0 | 43200 | < th | dose independent | sin | 21 | NA |
| 246 | 9.89 | temperature | 25.0 | 43200 | > th | dose independent | rect. | 15 | 4 |
| 293 | 9.90 | temperature | 25.0 | 43200 | < th | dose independent | rect. | 15 | 4 |
| 308 | 9.90 | wind | 5.0 | 43200 | < th | dose independent | rect. | 1 | 8 |
| 324 | 9.90 | wind | 5.0 | 43200 | < th | dose independent | rect. | 21 | 12 |
| 347 | 9.90 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 17 | 7 |
| 410 | 9.91 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 513 | 9.93 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 514 | 9.93 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 582 | 9.93 | temperature | 30.0 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 583 | 9.93 | humidity | 80.0 | 43200 | < th | dose dependent | rect. | 18 | 1 |
| 586 | 9.93 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 18 | 3 |
| 592 | 9.93 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 9 | 5 |
| 608 | 9.94 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 708 | 9.94 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 21 | 13 |
| 770 | 9.95 | temperature | 20.0 | 43200 | > th | dose dependent | sin | 18 | NA |
| 773 | 9.95 | temperature | 30.0 | 43200 | < th | dose dependent | rect. | 10 | 1 |
| 774 | 9.95 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 10 | 2 |
| 794 | 9.95 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 2 | 8 |
| 830 | 9.96 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 14 | 3 |
| 831 | 9.96 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 14 | 3 |
| 879 | 9.96 | temperature | 20.0 | 43200 | > th | dose dependent | sin | 16 | NA |
| 884 | 9.96 | temperature | 20.0 | 43200 | > th | dose dependent | rect. | 10 | 1 |
| 956 | 9.97 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 24 | 1 |
| 957 | 9.97 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 24 | 1 |
| 960 | 9.97 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 7 | 2 |
| 971 | 9.97 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 23 | 6 |
| 979 | 9.97 | wind | 3.0 | 14400 | < th | dose independent | rect. | 6 | 11 |