BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0945800 Os01g0945800|AK072850
(363 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0945800 RNA-binding region RNP-1 (RNA recognition moti... 646 0.0
Os05g0376175 RNA-binding region RNP-1 (RNA recognition moti... 189 3e-48
Os07g0584500 RNA-binding region RNP-1 (RNA recognition moti... 134 9e-32
Os11g0637700 RNA-binding region RNP-1 (RNA recognition moti... 132 4e-31
Os02g0221500 Paraneoplastic encephalomyelitis antigen famil... 127 1e-29
AK120313 124 2e-28
Os08g0492100 Paraneoplastic encephalomyelitis antigen famil... 112 5e-25
Os10g0470900 RNA-binding region RNP-1 (RNA recognition moti... 107 2e-23
Os06g0566100 RNA-binding region RNP-1 (RNA recognition moti... 107 2e-23
Os08g0320100 RNA-binding region RNP-1 (RNA recognition moti... 105 4e-23
Os08g0557100 Similar to Nucleic acid-binding protein precursor 86 4e-17
Os09g0565200 Similar to Nucleic acid-binding protein precursor 81 1e-15
Os01g0766700 77 2e-14
Os05g0376000 Glycoside hydrolase, family 19 protein 76 5e-14
Os03g0376600 Similar to 29 kDa ribonucleoprotein, chloropla... 75 9e-14
Os03g0278500 Polyadenylate binding protein, human types 1, ... 73 3e-13
Os01g0614500 RNA-binding region RNP-1 (RNA recognition moti... 72 7e-13
Os09g0279500 Similar to Plastid-specific 30S ribosomal prot... 69 4e-12
Os07g0631900 RNA-binding region RNP-1 (RNA recognition moti... 69 6e-12
Os12g0136200 WD40-like domain containing protein 67 2e-11
AK119744 67 2e-11
Os09g0115400 Similar to Poly(A)-binding protein 65 8e-11
>Os01g0945800 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 363
Score = 646 bits (1667), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 318/335 (94%), Positives = 318/335 (94%)
Query: 1 MATKLVVLGIPWDVDTEGLREYMGKFGPLDDCVVMKERSSGRSRGFGYVTFSSADDAKNV 60
MATKLVVLGIPWDVDTEGLREYMGKFGPLDDCVVMKERSSGRSRGFGYVTFSSADDAKNV
Sbjct: 1 MATKLVVLGIPWDVDTEGLREYMGKFGPLDDCVVMKERSSGRSRGFGYVTFSSADDAKNV 60
Query: 61 LECEHVLGNRTLEVKIATPKEEMKSQGSKKATRIFVARIPQSVDESMFRRHFEAYGEITD 120
LECEHVLGNRTLEVKIATPKEEMKSQGSKKATRIFVARIPQSVDESMFRRHFEAYGEITD
Sbjct: 61 LECEHVLGNRTLEVKIATPKEEMKSQGSKKATRIFVARIPQSVDESMFRRHFEAYGEITD 120
Query: 121 LYMPKEHGSKGHRGIGFITFQSAESVDSIMQDSHELDGTTVVVDRATPKDEEVRYPPSRG 180
LYMPKEHGSKGHRGIGFITFQSAESVDSIMQDSHELDGTTVVVDRATPKDEEVRYPPSRG
Sbjct: 121 LYMPKEHGSKGHRGIGFITFQSAESVDSIMQDSHELDGTTVVVDRATPKDEEVRYPPSRG 180
Query: 181 ASQGGYGAYNAYISAATRYAALGAPTLYDHPXXXXXXXXXXXXXXXXXNKKIFVGRLPQE 240
ASQGGYGAYNAYISAATRYAALGAPTLYDHP NKKIFVGRLPQE
Sbjct: 181 ASQGGYGAYNAYISAATRYAALGAPTLYDHPGSAYGRGGYYGSSQGMGNKKIFVGRLPQE 240
Query: 241 ANTEDLRHYFGKFGRIVDAYIPKDPKRSGHRGFGFVTFADEGVADRVARRSHEILGHEVA 300
ANTEDLRHYFGKFGRIVDAYIPKDPKRSGHRGFGFVTFADEGVADRVARRSHEILGHEVA
Sbjct: 241 ANTEDLRHYFGKFGRIVDAYIPKDPKRSGHRGFGFVTFADEGVADRVARRSHEILGHEVA 300
Query: 301 IDTAAPLEGDSGGGYMEPMDLYGAYGSMRTYGRFC 335
IDTAAPLEGDSGGGYMEPMDLYGAYGSMRTYGRFC
Sbjct: 301 IDTAAPLEGDSGGGYMEPMDLYGAYGSMRTYGRFC 335
>Os05g0376175 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 134
Score = 189 bits (480), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 92/121 (76%), Positives = 106/121 (87%), Gaps = 2/121 (1%)
Query: 49 VTFSSADDAKNVLECEHVLGNRTLEVKIATPKEEMKSQGSKKATRIFVARIPQSVDESMF 108
+TF + ++ V++ EH+LGNRTLEVKIATPKEEM++ G KKATRIFVARIPQSVDES F
Sbjct: 9 ITF--INSSQKVVKDEHILGNRTLEVKIATPKEEMRAPGIKKATRIFVARIPQSVDESKF 66
Query: 109 RRHFEAYGEITDLYMPKEHGSKGHRGIGFITFQSAESVDSIMQDSHELDGTTVVVDRATP 168
RRHFEA+GEI DLYMPKE SK HRGIGFITF+SAE VD+IMQ++HELDGTTV VDRATP
Sbjct: 67 RRHFEAFGEIIDLYMPKELRSKSHRGIGFITFRSAECVDNIMQETHELDGTTVAVDRATP 126
Query: 169 K 169
K
Sbjct: 127 K 127
Score = 75.1 bits (183), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 45/76 (59%)
Query: 231 KIFVGRLPQEANTEDLRHYFGKFGRIVDAYIPKDPKRSGHRGFGFVTFADEGVADRVARR 290
+IFV R+PQ + R +F FG I+D Y+PK+ + HRG GF+TF D + +
Sbjct: 51 RIFVARIPQSVDESKFRRHFEAFGEIIDLYMPKELRSKSHRGIGFITFRSAECVDNIMQE 110
Query: 291 SHEILGHEVAIDTAAP 306
+HE+ G VA+D A P
Sbjct: 111 THELDGTTVAVDRATP 126
>Os07g0584500 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 472
Score = 134 bits (337), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 69/181 (38%), Positives = 112/181 (61%), Gaps = 12/181 (6%)
Query: 4 KLVVLGIPWDVDTEGLREYMGKFGPLDDCVVMKERSSGRSRGFGYVTFSSADDAKNVLEC 63
KL V GI W+ D + LREY +FG + + V+M++R++GR+RGFG+V F+ A A+ V
Sbjct: 7 KLFVGGISWETDEDRLREYFSRFGEVTEAVIMRDRNTGRARGFGFVVFTDAGVAERVTMD 66
Query: 64 EHVLGNRTLEVKIATPKEE-----------MKSQGSKKATRIFVARIPQSVDESMFRRHF 112
+H++ R +E K A P+++ + S G + +IFV + +V E FRR+F
Sbjct: 67 KHMIDGRMVEAKKAVPRDDQSITSKNNGSSIGSPGPGRTRKIFVGGLASNVTEVEFRRYF 126
Query: 113 EAYGEITDLYMPKEHGSKGHRGIGFITFQSAESVD-SIMQDSHELDGTTVVVDRATPKDE 171
E +G ITD+ + +H ++ RG GFIT+ S ++VD ++ ++ HEL+G V V RA PK++
Sbjct: 127 EQFGVITDVVVMYDHNTQRPRGFGFITYDSEDAVDKALHKNFHELNGKMVEVKRAVPKEQ 186
Query: 172 E 172
Sbjct: 187 S 187
Score = 65.1 bits (157), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 44/81 (54%)
Query: 231 KIFVGRLPQEANTEDLRHYFGKFGRIVDAYIPKDPKRSGHRGFGFVTFADEGVADRVARR 290
K+FVG + E + + LR YF +FG + +A I +D RGFGFV F D GVA+RV
Sbjct: 7 KLFVGGISWETDEDRLREYFSRFGEVTEAVIMRDRNTGRARGFGFVVFTDAGVAERVTMD 66
Query: 291 SHEILGHEVAIDTAAPLEGDS 311
H I G V A P + S
Sbjct: 67 KHMIDGRMVEAKKAVPRDDQS 87
>Os11g0637700 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 467
Score = 132 bits (332), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 71/197 (36%), Positives = 118/197 (59%), Gaps = 14/197 (7%)
Query: 2 ATKLVVLGIPWDVDTEGLREYMGKFGPLDDCVVMKERSSGRSRGFGYVTFSSADDAKNVL 61
A KL + GI WD + + LREY K+G + + V+M++R++GR+RGFG++ F+ A+ V+
Sbjct: 5 AGKLFIGGISWDTNEDRLREYFDKYGEVVEAVIMRDRATGRARGFGFIVFADPAVAERVI 64
Query: 62 ECEHVLGNRTLEVKIATPKEEMK-----------SQGSKKATRIFVARIPQSVDESMFRR 110
+H++ R +E K A P+++ S G + +IFV + +V E+ FR+
Sbjct: 65 MEKHMIDGRMVEAKKAVPRDDQHALSKSGGSAHGSPGPSRTKKIFVGGLASTVTEADFRK 124
Query: 111 HFEAYGEITDLYMPKEHGSKGHRGIGFITFQSAESVD-SIMQDSHELDGTTVVVDRATPK 169
+FE +G ITD+ + +H ++ RG GFIT+ S ++VD ++ + HEL+G V V RA PK
Sbjct: 125 YFEQFGTITDVVVMYDHNTQRPRGFGFITYDSEDAVDKALFKTFHELNGKMVEVKRAVPK 184
Query: 170 DEEVRYPPSRGASQGGY 186
E+ PS + GG+
Sbjct: 185 --ELSPGPSMRSPVGGF 199
>Os02g0221500 Paraneoplastic encephalomyelitis antigen family protein
Length = 397
Score = 127 bits (320), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 64/168 (38%), Positives = 98/168 (58%), Gaps = 2/168 (1%)
Query: 4 KLVVLGIPWDVDTEGLREYMGKFGPLDDCVVMKERSSGRSRGFGYVTFSSADDAKNVLEC 63
K+ V G+ W+ E ++ K+G + D V+MK++ + RGFG+VTFS VLE
Sbjct: 67 KIFVGGVAWETTEESFSKHFEKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLED 126
Query: 64 EHVLGNRTLEVKIATPKEEMKSQGSKKATRIFVARIPQSVDESMFRRHFEAYGEITDLYM 123
EHV+ RT+EVK P+EEM S+ K +IFV +P S+ E R HF YG+I + +
Sbjct: 127 EHVIDGRTVEVKRTVPREEMSSKDGPKTRKIFVGGLPSSLTEDELREHFSPYGKIVEHQI 186
Query: 124 PKEHGSKGHRGIGFITFQSAESVDSIMQDS--HELDGTTVVVDRATPK 169
+H + RG GF+TF+S +SV+ ++ + +L G V + +A PK
Sbjct: 187 MLDHSTGRSRGFGFVTFESEDSVERVISEGRMRDLGGKQVEIKKAEPK 234
Score = 87.8 bits (216), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 63/225 (28%), Positives = 93/225 (41%), Gaps = 51/225 (22%)
Query: 84 KSQGSKKATRIFVARIPQSVDESMFRRHFEAYGEITDLYMPKEHGSKGHRGIGFITFQSA 143
++ G + +IFV + E F +HFE YG ITD + K+ +K RG GF+TF
Sbjct: 58 RAPGGDSSGKIFVGGVAWETTEESFSKHFEKYGAITDSVIMKDKHTKMPRGFGFVTFSDP 117
Query: 144 ESVDSIMQDSHELDGTTVVVDRATPKDEEVRYPPSRGASQGGYGAYNAYISAATRYAALG 203
+D +++D H +DG TV V R P++E ++ TR +G
Sbjct: 118 SVIDKVLEDEHVIDGRTVEVKRTVPREE-----------------MSSKDGPKTRKIFVG 160
Query: 204 APTLYDHPXXXXXXXXXXXXXXXXXNKKIFVGRLPQEANTEDLRHYFGKFGRIVDAYIPK 263
LP ++LR +F +G+IV+ I
Sbjct: 161 G--------------------------------LPSSLTEDELREHFSPYGKIVEHQIML 188
Query: 264 DPKRSGHRGFGFVTFADEGVADRVAR--RSHEILGHEVAIDTAAP 306
D RGFGFVTF E +RV R ++ G +V I A P
Sbjct: 189 DHSTGRSRGFGFVTFESEDSVERVISEGRMRDLGGKQVEIKKAEP 233
>AK120313
Length = 409
Score = 124 bits (310), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 63/168 (37%), Positives = 97/168 (57%), Gaps = 2/168 (1%)
Query: 4 KLVVLGIPWDVDTEGLREYMGKFGPLDDCVVMKERSSGRSRGFGYVTFSSADDAKNVLEC 63
K+ V G+ W+ E ++ K+G + D V+MK++ + RG G+VTFS VLE
Sbjct: 79 KIFVGGVAWETTEESFSKHFEKYGAITDSVIMKDKHTKMPRGSGFVTFSDPSVIDKVLED 138
Query: 64 EHVLGNRTLEVKIATPKEEMKSQGSKKATRIFVARIPQSVDESMFRRHFEAYGEITDLYM 123
EHV+ RT+EVK P+EEM S+ K +IFV +P S+ E R HF YG+I + +
Sbjct: 139 EHVIDGRTVEVKRTVPREEMSSKDGPKTRKIFVGGLPSSLTEDELREHFSPYGKIVEHQI 198
Query: 124 PKEHGSKGHRGIGFITFQSAESVDSIMQDS--HELDGTTVVVDRATPK 169
+H + RG GF+TF+S +SV+ ++ + +L G V + +A PK
Sbjct: 199 MLDHSTGRSRGFGFVTFESEDSVERVISEGRMRDLGGKQVEIKKAEPK 246
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 63/225 (28%), Positives = 93/225 (41%), Gaps = 51/225 (22%)
Query: 84 KSQGSKKATRIFVARIPQSVDESMFRRHFEAYGEITDLYMPKEHGSKGHRGIGFITFQSA 143
++ G + +IFV + E F +HFE YG ITD + K+ +K RG GF+TF
Sbjct: 70 RAPGGDSSGKIFVGGVAWETTEESFSKHFEKYGAITDSVIMKDKHTKMPRGSGFVTFSDP 129
Query: 144 ESVDSIMQDSHELDGTTVVVDRATPKDEEVRYPPSRGASQGGYGAYNAYISAATRYAALG 203
+D +++D H +DG TV V R P++E ++ TR +G
Sbjct: 130 SVIDKVLEDEHVIDGRTVEVKRTVPREE-----------------MSSKDGPKTRKIFVG 172
Query: 204 APTLYDHPXXXXXXXXXXXXXXXXXNKKIFVGRLPQEANTEDLRHYFGKFGRIVDAYIPK 263
LP ++LR +F +G+IV+ I
Sbjct: 173 G--------------------------------LPSSLTEDELREHFSPYGKIVEHQIML 200
Query: 264 DPKRSGHRGFGFVTFADEGVADRVAR--RSHEILGHEVAIDTAAP 306
D RGFGFVTF E +RV R ++ G +V I A P
Sbjct: 201 DHSTGRSRGFGFVTFESEDSVERVISEGRMRDLGGKQVEIKKAEP 245
>Os08g0492100 Paraneoplastic encephalomyelitis antigen family protein
Length = 362
Score = 112 bits (279), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 62/202 (30%), Positives = 110/202 (54%), Gaps = 4/202 (1%)
Query: 4 KLVVLGIPWDVDTEGLREYMGKFGPLDDCVVMKERSSGRSRGFGYVTFSSADDAKNVLEC 63
K+ V G+P D ++ G++G + D V+M+++ + + RGFG++T+S+ V++
Sbjct: 24 KIFVGGLPRDTTEADFVKHFGQYGEIVDSVIMRDKHTSQPRGFGFITYSNPAVVDRVMDD 83
Query: 64 EHVLGNRTLEVKIATPKEEMKSQGSKKATRIFVARIPQSVDESMFRRHFEAYGEITDLYM 123
H + +E+K PK+ ++S+ K +IFV +PQ++ E F+ F+ YG + D +
Sbjct: 84 IHEFNGKQVEIKRTIPKDSVQSK-DFKTKKIFVGGLPQALTEDDFKHFFQKYGPVVDHQI 142
Query: 124 PKEHGSKGHRGIGFITFQSAESVDSIMQDSHELD--GTTVVVDRATPKDEEVRYPPSRG- 180
++H +K RG GFI F S + VD ++ + + +D G V + +A PK P S G
Sbjct: 143 MRDHQTKRSRGFGFIVFSSDQVVDDLLANGNMIDLAGAKVEIKKAEPKKSSNPPPSSHGS 202
Query: 181 ASQGGYGAYNAYISAATRYAAL 202
AS+ YG + S+ Y L
Sbjct: 203 ASRSAYGRDSRGHSSGNDYGGL 224
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 46/78 (58%)
Query: 231 KIFVGRLPQEANTEDLRHYFGKFGRIVDAYIPKDPKRSGHRGFGFVTFADEGVADRVARR 290
KIFVG LP++ D +FG++G IVD+ I +D S RGFGF+T+++ V DRV
Sbjct: 24 KIFVGGLPRDTTEADFVKHFGQYGEIVDSVIMRDKHTSQPRGFGFITYSNPAVVDRVMDD 83
Query: 291 SHEILGHEVAIDTAAPLE 308
HE G +V I P +
Sbjct: 84 IHEFNGKQVEIKRTIPKD 101
>Os10g0470900 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 464
Score = 107 bits (267), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 59/201 (29%), Positives = 99/201 (49%), Gaps = 34/201 (16%)
Query: 4 KLVVLGIPWDVDTEGLREYMGKFGPLDDCVVMKERSSGRSRGFGYVTFSSADDAKNVLEC 63
KL + GI W+ E LR++ +G + VM+++ +GR RGFG+V FS L
Sbjct: 7 KLFIGGISWETTEEKLRDHFAAYGDVSQAAVMRDKLTGRPRGFGFVVFSDPSSVDAALVD 66
Query: 64 EHVLGNRTLEVKIATPKEEMKSQGS---------------------------------KK 90
H L RT++VK A +EE ++ + +
Sbjct: 67 PHTLDGRTVDVKRALSREEQQAAKAANPSAGGRHASGGGGGGGGAGGGGGGGGGDAGGAR 126
Query: 91 ATRIFVARIPQSVDESMFRRHFEAYGEITDLYMPKEHGSKGHRGIGFITFQSAESVDSIM 150
+IFV +P ++ E FR++F+ YG +TD+ + + ++ RG GFITF + ++VD ++
Sbjct: 127 TKKIFVGGLPSNLTEDEFRQYFQTYGVVTDVVVMYDQNTQRPRGFGFITFDAEDAVDRVL 186
Query: 151 QDS-HELDGTTVVVDRATPKD 170
+ H+L G V V RA P++
Sbjct: 187 HKTFHDLSGKMVEVKRALPRE 207
Score = 89.4 bits (220), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 60/219 (27%), Positives = 91/219 (41%), Gaps = 17/219 (7%)
Query: 93 RIFVARIPQSVDESMFRRHFEAYGEITDLYMPKEHGSKGHRGIGFITFQSAESVDSIMQD 152
++F+ I E R HF AYG+++ + ++ + RG GF+ F SVD+ + D
Sbjct: 7 KLFIGGISWETTEEKLRDHFAAYGDVSQAAVMRDKLTGRPRGFGFVVFSDPSSVDAALVD 66
Query: 153 SHELDGTTVVVDRATPKDEEVRYPPSRGASQGGYGAYNAYISAATRYAALGAPTLYDHPX 212
H LDG TV V RA ++E+ A + + +
Sbjct: 67 PHTLDGRTVDVKRALSREEQQA----------------AKAANPSAGGRHASGGGGGGGG 110
Query: 213 XXXXXXXXXXXXXXXXNKKIFVGRLPQEANTEDLRHYFGKFGRIVDAYIPKDPKRSGHRG 272
KKIFVG LP ++ R YF +G + D + D RG
Sbjct: 111 AGGGGGGGGGDAGGARTKKIFVGGLPSNLTEDEFRQYFQTYGVVTDVVVMYDQNTQRPRG 170
Query: 273 FGFVTFADEGVADRVARRS-HEILGHEVAIDTAAPLEGD 310
FGF+TF E DRV ++ H++ G V + A P E +
Sbjct: 171 FGFITFDAEDAVDRVLHKTFHDLSGKMVEVKRALPREAN 209
>Os06g0566100 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 285
Score = 107 bits (266), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 53/137 (38%), Positives = 83/137 (60%), Gaps = 2/137 (1%)
Query: 35 MKERSSGRSRGFGYVTFSSADDAKNVLECEHVLGNRTLEVKIATPKEEMKSQGSKKATRI 94
MK++ + RGFG+VTFS VL+ EH + RT+EVK P+EEM S+ K +I
Sbjct: 1 MKDKHTKMPRGFGFVTFSDPSVIDKVLQDEHTIDGRTVEVKRTVPREEMSSKDGPKTRKI 60
Query: 95 FVARIPQSVDESMFRRHFEAYGEITDLYMPKEHGSKGHRGIGFITFQSAESVDSIMQDS- 153
FV IP S+ E + HF +YG++ + + +HG+ RG GF+TF++ ++V+ +M +
Sbjct: 61 FVGGIPPSLTEDKLKEHFSSYGKVVEHQIMLDHGTGRSRGFGFVTFENEDAVERVMSEGR 120
Query: 154 -HELDGTTVVVDRATPK 169
H+L G V + +A PK
Sbjct: 121 MHDLAGKQVEIKKAEPK 137
>Os08g0320100 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 350
Score = 105 bits (263), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 99/180 (55%), Gaps = 6/180 (3%)
Query: 3 TKLVVLGIPWDVDTEGLREYMGKFGPLDDCVVMKERSSGRSRGFGYVTFSSADDAKNVLE 62
K+ + G+P D +EY GK+G + D V+MK+R + + RGFG++TF+ V+E
Sbjct: 15 AKIFIGGLPKDTTMGTFKEYFGKYGEIVDAVIMKDRFTQKPRGFGFITFADPAVVDRVIE 74
Query: 63 CEHVLGNRTLEVKIATPKEEMKSQGSKKATRIFVARIPQSVDESMFRRHFEAYGEITDLY 122
HV+ + +E+K PK + K +IFV +P ++ E F+ F +G++ +
Sbjct: 75 DNHVINGKEVEIKRTIPKGAAPLK-DFKTKKIFVGGLPSALKEDEFKEFFSKFGKVVEHE 133
Query: 123 MPKEHGSKGHRGIGFITFQSAESVDSIMQ---DSHELDGTTVVVDRATPKDEEVRYPPSR 179
+ ++H + RG GF+ F + ++VD ++ + +L+G+ V + +A PK + PP R
Sbjct: 134 IIRDHSTNRSRGFGFVVFDAEKTVDELLAKKGNMIDLNGSQVEIKKAEPK--KPSNPPHR 191
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 38/76 (50%), Positives = 45/76 (59%)
Query: 231 KIFVGRLPQEANTEDLRHYFGKFGRIVDAYIPKDPKRSGHRGFGFVTFADEGVADRVARR 290
KIF+G LP++ + YFGK+G IVDA I KD RGFGF+TFAD V DRV
Sbjct: 16 KIFIGGLPKDTTMGTFKEYFGKYGEIVDAVIMKDRFTQKPRGFGFITFADPAVVDRVIED 75
Query: 291 SHEILGHEVAIDTAAP 306
+H I G EV I P
Sbjct: 76 NHVINGKEVEIKRTIP 91
>Os08g0557100 Similar to Nucleic acid-binding protein precursor
Length = 194
Score = 85.9 bits (211), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 94/185 (50%), Gaps = 14/185 (7%)
Query: 3 TKLVVLGIPWDVDTEGLREYMGKFGPLDDCVVMKERSSGRSRGFGYVTFSSADDAKNVLE 62
K+ V +P+DVD+EGL + + G ++ V+ R +G+SRGFG+VT S+ ++A +E
Sbjct: 16 AKVYVGNLPYDVDSEGLAQLFEQAGVVEVAEVIYNRETGQSRGFGFVTMSTIEEADKAIE 75
Query: 63 C--EHVLGNRTLEVKIATPKEEMKSQGSKK---ATRIFVARIPQSVDESMFRRHFEAYGE 117
+ + R L V A P+ + ++ A R +V +P VD+S + F +GE
Sbjct: 76 MLNRYDINGRLLNVNRAAPRGSRVERPPRQFAPAFRAYVGNLPWQVDDSRLLQLFSEHGE 135
Query: 118 ITDLYMPKEHGSKGHRGIGFITFQSAESVDSIMQ--DSHELDGTTVVVDRATPKDEEVRY 175
+ + + + S RG GF++ S E +D + D ELDG + V+ A +
Sbjct: 136 VVNASVVYDRESGRSRGFGFVSMASKEELDDAISALDGQELDGRPLRVNVAAER------ 189
Query: 176 PPSRG 180
P RG
Sbjct: 190 -PQRG 193
>Os09g0565200 Similar to Nucleic acid-binding protein precursor
Length = 322
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 94/184 (51%), Gaps = 13/184 (7%)
Query: 4 KLVVLGIPWDVDTEGLREYMGKFGPLDDCVVMKERSSGRSRGFGYVTFSSADDAKNVLEC 63
K+ V +P+D+D+E L + + G ++ V+ R + RSRGFG+VT S+ ++A+ +E
Sbjct: 144 KVYVGNLPYDIDSERLAQLFEQAGIVEVSEVIYNRETDRSRGFGFVTMSTVEEAEKAVEM 203
Query: 64 EHV--LGNRTLEVKIATPKEEMKSQGSKK---ATRIFVARIPQSVDESMFRRHFEAYGEI 118
H + R L V A P+ + ++ + RI+V +P VD+S + F +G++
Sbjct: 204 FHRYDVDGRLLTVNKAAPRGARVERPPRQFGPSFRIYVGNLPWQVDDSRLVQLFSEHGKV 263
Query: 119 TDLYMPKEHGSKGHRGIGFITFQSAESVDSIMQ--DSHELDGTTVVVDRATPKDEEVRYP 176
D + + + RG GF+T + E +D + D LDG + V+ A + P
Sbjct: 264 VDARVVYDRETGRSRGFGFVTMATQEELDDAIAALDGQSLDGRALRVNVAEER------P 317
Query: 177 PSRG 180
P RG
Sbjct: 318 PRRG 321
>Os01g0766700
Length = 345
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 85/177 (48%), Gaps = 9/177 (5%)
Query: 4 KLVVLGIPWDVDTEGLREYMGKFGPLDDCVVMKERSSGRSRGFGYVTFSSADDAKNVLEC 63
K+ V G+P LR + +FG + K + +G +RGF +V F + DDA +
Sbjct: 30 KVFVGGVPLGTSESELRAHFSRFGTVAFVGAPKNKQTGAARGFAFVQFVNPDDAAAAIAA 89
Query: 64 ---EHVLGNRTLEVKIATPKEE----MKSQGSKKATRIFVARIPQSVDESMFRRHFEAYG 116
+V+ T+++K+A K S G +K +IFV +P S E + +F +G
Sbjct: 90 GPDRNVIRGTTMDIKLAQLKPSAGGPQLSPGDQK-RKIFVGGLPVSATEKKLKEYFNKFG 148
Query: 117 EITDLYMPKEHGSKGHRGIGFITFQSAESVD-SIMQDSHELDGTTVVVDRATPKDEE 172
E+ + + +K RG GFI F S ES ++ +D H L G V V A PK +
Sbjct: 149 EVNRAIVVIDLNTKMPRGFGFIQFASEESTARALKKDKHFLCGQWVEVSLAMPKQQN 205
>Os05g0376000 Glycoside hydrolase, family 19 protein
Length = 345
Score = 75.9 bits (185), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 37/53 (69%), Positives = 43/53 (81%), Gaps = 3/53 (5%)
Query: 285 DRVARRSHEILGHEVAIDTAAPLEGDSGGGYMEPMDL---YGAYGSMRTYGRF 334
+RVA+RSHEILG EVA+DTA PLEG SGGGY+EP + YGAYGS+ YGRF
Sbjct: 254 NRVAQRSHEILGQEVAVDTAEPLEGGSGGGYLEPAEAYGPYGAYGSLLPYGRF 306
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 37/43 (86%), Gaps = 1/43 (2%)
Query: 169 KDEEVRYPPSRGASQGGYGAYNAYISAATRYAALGAPTLYDHP 211
KDE+VR+PP R QGGYGAYNAYI+AATRYAALG PT YDHP
Sbjct: 207 KDEDVRHPPRR-VVQGGYGAYNAYITAATRYAALGTPTSYDHP 248
>Os03g0376600 Similar to 29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29)
Length = 265
Score = 74.7 bits (182), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 91/179 (50%), Gaps = 7/179 (3%)
Query: 4 KLVVLGIPWDVDTEGLREYMGKFGPLDDCVVMKERSSGRSRGFGYVTFSSADDAKNVLE- 62
++ V +P+ VD+ L + G ++ V+ ++ +GRSRGFG+VT SS ++ + +E
Sbjct: 87 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSSVEEVEAAVEQ 146
Query: 63 -CEHVLGNRTLEVKIA-TPKEEMKSQGSKK--ATRIFVARIPQSVDESMFRRHFEAYGEI 118
++L R+L V P E SQ + + A R++V + VD + F GE+
Sbjct: 147 FNGYILDGRSLRVNSGPPPPREQSSQRAPRGEANRVYVGNLSWGVDNAALANLFSGEGEV 206
Query: 119 TDLYMPKEHGSKGHRGIGFITFQSAESVDSIMQ--DSHELDGTTVVVDRATPKDEEVRY 175
+ + + S RG GF+T+ SAE V++ + D ++DG + V A K +Y
Sbjct: 207 LEAKVIYDRESGRSRGFGFVTYGSAEEVENAVSNLDGADMDGRQIRVTVAESKPPRRQY 265
>Os03g0278500 Polyadenylate binding protein, human types 1, 2, 3, 4 family
protein
Length = 647
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 69/271 (25%), Positives = 108/271 (39%), Gaps = 47/271 (17%)
Query: 14 VDTEGLREYMGKFGPLDDCVVMKERSSGRSRGFGYVTFS---SADDAKNVLECEHVLGNR 70
VD L+E KFG + C V K G SRG+G+V F+ SAD + L H G R
Sbjct: 137 VDNVSLQELFCKFGDILSCKVAKNED-GTSRGYGFVQFALQESADASIQNLNNSHFCG-R 194
Query: 71 TLEVKIATPKEEMKSQGSKKATRIFVARIPQSVDESMFRRHFEAYGEITDL-YMPKEHGS 129
L V K E + K T +++ + + E + + F YG + + M ++ G+
Sbjct: 195 QLHVATFIKKSERSTNNDDKYTNLYMKNLDDDITEELIKLKFSQYGLVISVKIMKRDDGT 254
Query: 130 KGHRGIGFITFQSAESVDSIMQDSH--ELDGTTVVVDRATPKDEEVRYPPSRGASQGGYG 187
+G GF++FQ+ ES + + L T+ V RA K E +Y +
Sbjct: 255 S--KGFGFVSFQNPESAKRAKESMNGMLLGSKTLYVARAQKKAERKQYLQRLHEEK---- 308
Query: 188 AYNAYISAATRYAALGAPTLYDHPXXXXXXXXXXXXXXXXXNKKIFVGRLPQEANTEDLR 247
N I+ + +++ + E + LR
Sbjct: 309 -RNEIITKSN-------------------------------GSNVYIKNINDEVGDDALR 336
Query: 248 HYFGKFGRIVDAYIPKDPKRSGHRGFGFVTF 278
F +FG I A I +D K +GFGFV +
Sbjct: 337 ERFNEFGNITSAKIMRDEKGIS-KGFGFVCY 366
>Os01g0614500 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 447
Score = 72.0 bits (175), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 82/176 (46%), Gaps = 13/176 (7%)
Query: 4 KLVVLGIPWDVDTEGLREYMGKFGPLDDCVVMKERSSGRSRGFGYVTFSSADDAKNVL-E 62
KL V G+ W+ +++ LR FG L++ VV+ ++S+GRS+G+G+VTF AD A L E
Sbjct: 77 KLFVRGLGWETNSDSLRAIFSAFGDLEEAVVITDKSTGRSKGYGFVTFRHADSAVLALKE 136
Query: 63 CEHVLGNRTLEVKIATPKEEMKSQGSKKAT-----------RIFVARIPQSVDESMFRRH 111
+ R ++A + G +IFV +P + H
Sbjct: 137 PSKKIDGRMTVTQLAAAGAAGGASGGAAGAGGAPAADVSLRKIFVGNVPADMPSERLLAH 196
Query: 112 FEAYGEITDLYMPKEHGSKGHRGIGFITFQSAESVDSIMQDSHE-LDGTTVVVDRA 166
F AYGEI + + + + RG +++ E + + DS + +DG +V A
Sbjct: 197 FAAYGEIEEGPLGFDKQTGKFRGFALFVYKTPEGAQASLVDSVKVIDGHQLVCKLA 252
>Os09g0279500 Similar to Plastid-specific 30S ribosomal protein 2, chloroplast
precursor (PSRP- 2)
Length = 245
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 88/179 (49%), Gaps = 16/179 (8%)
Query: 2 ATKLVVLGIPWDVDTEGLREYMGKFGPLDDCVVMKERSSGRSRGFGYVTFSSADDAKNVL 61
A KL V IP V + L G ++ VM ++ +GRSR FG+VT S+ ++A +
Sbjct: 69 ARKLYVGNIPRTVTNDELAAMFADHGTVERAEVMFDKYTGRSRRFGFVTMSTPEEANAAI 128
Query: 62 EC--EHVLGNRTLEVKI----------ATPKEEMKSQGSKKATRIFVARIPQSVDESMFR 109
E E +G R ++V + + P+ E S+ +++V + +SV M +
Sbjct: 129 ESLNETEVGGRKIKVNVTESFLPNIDRSAPEPEPVFVDSQ--YKVYVGNLAKSVTTEMLK 186
Query: 110 RHFEAYGEITDLYMPKEHGSKGHRGIGFITFQSAESVDSIMQ--DSHELDGTTVVVDRA 166
F GE+ + + G+ +G GF+TF S E V + + ++ EL+G + V++A
Sbjct: 187 NFFSEKGEVLSATVSRIPGTAKSKGYGFVTFSSEEEVQAAVSTFNNAELEGQPIRVNKA 245
>Os07g0631900 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 264
Score = 68.9 bits (167), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 86/179 (48%), Gaps = 13/179 (7%)
Query: 4 KLVVLGIPWDVDTEGLREYMGKFGPLDDCVVMKERSSGRSRGFGYVTFSSADDAKNVLE- 62
K+ V +P+ VD+ L + G ++ V+ +R +GRSRGFG+VT S+A++A +E
Sbjct: 81 KVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVVYDRQTGRSRGFGFVTMSTAEEAGAAVEQ 140
Query: 63 -CEHVLGNRTLEVKIA--TPKEEMKSQGSK-------KATRIFVARIPQSVDESMFRRHF 112
+ R L V P+++ + + + +++V + VD S F
Sbjct: 141 FNGYTFQGRPLRVNSGPPPPRDDFAPRSPRGGGSNFDSSNKLYVGNLAWGVDNSTLENLF 200
Query: 113 EAYGEITDLYMPKEHGSKGHRGIGFITFQSAESVDSIMQ--DSHELDGTTVVVDRATPK 169
G + D + + S RG GF+T+ SAE V++ + D +LDG + V A K
Sbjct: 201 SEQGTVLDAKVIYDRESGRSRGFGFVTYGSAEEVNNAISNLDGVDLDGRQIRVTVAESK 259
>Os12g0136200 WD40-like domain containing protein
Length = 515
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/230 (25%), Positives = 100/230 (43%), Gaps = 29/230 (12%)
Query: 3 TKLVVLGIPWDVDTEGLREYMGKFGP-LDDCVVMKERSSGRSRGFGYVTF---SSADDAK 58
KL + +P + R+ + + GP + +MK S+ R+RG+G+V + + A+ A+
Sbjct: 202 NKLFIGNVPHSWTDDDFRKVVEEVGPGVLKADLMKVSSANRNRGYGFVEYYNHACAEYAR 261
Query: 59 NVLECEHV-LGNRTLEVKIATPKEEMKSQGSKKATRIFVARIPQSVDESMFRRHFEAYGE 117
+ L + V A PK S + + ++V +P++V ++ +R FE +GE
Sbjct: 262 QEMSSPTFKLDSNAPTVSWADPKNN-DSASTSQVKSVYVKNLPKNVTQAQLKRLFEHHGE 320
Query: 118 ITDLYMPKEHGSKGHRGIGFITFQSAESVDSIMQDS--HELDGTTVVVDRATP-----KD 170
I + +P G +R GF+ F+ +Q++ +ELDG + A P KD
Sbjct: 321 IEKVVLPPSRGGHDNR-YGFVHFKDRSMAMRALQNTERYELDGQVLDCSLAKPPAADKKD 379
Query: 171 EEVRYPPSRGAS---------------QGGYGAYNAYISAATRYAALGAP 205
+ V P S GA G YGA A + YA P
Sbjct: 380 DRVPLPSSNGAPLLPSYPPLGYGIMSVPGAYGAAPASTAQPMLYAPRAPP 429
>AK119744
Length = 746
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/194 (30%), Positives = 95/194 (48%), Gaps = 18/194 (9%)
Query: 14 VDTEGLREYMGKFGPLDDCVVMKERSSGRSRGFGYVTFSSADDAKNVLECEHVLGNRTLE 73
+D + L + FG + C V ++ G S+G+G+V + +A+ A N ++ HV G E
Sbjct: 147 IDNKALHDTFAAFGNILSCKVAQDEL-GNSKGYGFVHYETAEAANNAIK--HVNGMLLNE 203
Query: 74 VKIAT----PKEEMKSQGSK-KA--TRIFVARIPQSVDESMFRRHFEAYGEITDLYMPKE 126
K+ PK+E S+ + KA T I+V I V + FR FE +G+IT + ++
Sbjct: 204 KKVFVGHHIPKKERMSKFEEVKANFTNIYVKNIDLDVTDDEFRELFEKHGDITSASIARD 263
Query: 127 HGSKGHRGIGFITFQSAESVDSIMQ--DSHELDGTTVVVDRATPK---DEEVR--YPPSR 179
K RG GF+ + E+ + ++ + E G + V RA K +EE+R Y +R
Sbjct: 264 EQGK-SRGFGFVNYIKHEAASAAVEALNDTEFRGQKLYVGRAQKKHEREEELRKQYEAAR 322
Query: 180 GASQGGYGAYNAYI 193
Q Y N YI
Sbjct: 323 LEKQSKYQGVNLYI 336
>Os09g0115400 Similar to Poly(A)-binding protein
Length = 662
Score = 65.1 bits (157), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 73/157 (46%), Gaps = 17/157 (10%)
Query: 3 TKLVVLGIPWDVDTEGLREYMGKFGPLDDCVVMKERSSGRSRGFGYVTFSSADDAKNVLE 62
+ V + + + L+E GKFG + VVM+E GRS+ FG+V F S DDA ++
Sbjct: 219 NNVYVKNLSENTTEDDLKEIFGKFGTITSAVVMRE-GDGRSKCFGFVNFESPDDAAQAVQ 277
Query: 63 ---------CEHVLG------NRTLEVKIATPKEEMKSQGSKKATRIFVARIPQSVDESM 107
E +G R +E+K K ++ + T +++ + SVD+
Sbjct: 278 ELNGKKFDDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNLYLKNLDDSVDDDK 337
Query: 108 FRRHFEAYGEITDLYMPKEHGSKGHRGIGFITFQSAE 144
R F YG IT + ++ RG GF+ F+SAE
Sbjct: 338 LRELFAEYGTITSCKVMRDSNGV-SRGSGFVAFKSAE 373
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.137 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,734,117
Number of extensions: 494605
Number of successful extensions: 1868
Number of sequences better than 1.0e-10: 26
Number of HSP's gapped: 1862
Number of HSP's successfully gapped: 36
Length of query: 363
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 261
Effective length of database: 11,709,973
Effective search space: 3056302953
Effective search space used: 3056302953
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 157 (65.1 bits)