Os11g0637700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : RNA-binding region RNP-1 (RNA recognition motif) domain containing protein.
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Os11g0637700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : RNA-binding region RNP-1 (RNA recognition motif) domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 38.93 | 0.293 | 11 | -0.606 | 0.797 | -0.427 | -0.456 | 0.161 | -0.285 | 5.2 | 79.41 | 29 | -- | -- |
| 38.96 | 0.291 | 11 | -0.6 | 0.793 | -0.411 | -0.324 | -- | -0.292 | 5.32 | 81.18 | 50 | -- | -- |
| 39.36 | 0.292 | 11 | -0.607 | 0.791 | -0.416 | -- | 0.00976 | -0.289 | 5.32 | 80.42 | 38 | -- | -- |
| 39.26 | 0.292 | 11 | -0.589 | 0.789 | -0.424 | -- | -- | -0.29 | 5.38 | 82.35 | 50 | -- | -- |
| 54.49 | 0.344 | 10.9 | -0.636 | -- | 0.544 | -- | -0.523 | -0.191 | -- | 52.61 | 444 | -- | -- |
| 44.22 | 0.312 | 10.9 | -0.626 | 0.573 | -- | -0.387 | -- | -0.22 | 6.34 | -- | -- | -- | -- |
| 44.58 | 0.313 | 10.9 | -0.63 | 0.572 | -- | -- | -- | -0.218 | 6.45 | -- | -- | -- | -- |
| 54.7 | 0.344 | 10.9 | -0.613 | -- | 0.495 | -- | -- | -0.197 | -- | 51 | 436 | -- | -- |
| 48.2 | 0.323 | 10.9 | -- | 0.803 | -0.473 | -- | -- | -0.239 | 5.36 | 83 | 48 | -- | -- |
| 61.56 | 0.367 | 10.9 | -0.616 | -- | -- | -- | -- | -0.206 | -- | -- | -- | -- | -- |
| 55.04 | 0.347 | 10.9 | -- | 0.563 | -- | -- | -- | -0.148 | 6.51 | -- | -- | -- | -- |
| 64.54 | 0.374 | 10.9 | -- | -- | 0.505 | -- | -- | -0.13 | -- | 45.93 | 456 | -- | -- |
| 71.55 | 0.395 | 10.9 | -- | -- | -- | -- | -- | -0.138 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 35.19 | humidity | 70.0 | 30 | > th | dose dependent | rect. | 23 | 17 |
| 13 | 35.83 | humidity | 70.0 | 30 | > th | dose dependent | rect. | 23 | 15 |
| 28 | 36.19 | humidity | 70.0 | 90 | > th | dose dependent | rect. | 23 | 12 |
| 31 | 36.21 | humidity | 70.0 | 90 | > th | dose dependent | rect. | 23 | 10 |
| 33 | 36.26 | humidity | 80.0 | 10 | > th | dose independent | rect. | 23 | 19 |
| 44 | 36.46 | humidity | 70.0 | 30 | > th | dose dependent | sin | 6 | NA |
| 47 | 36.50 | humidity | 80.0 | 10 | > th | dose independent | rect. | 23 | 17 |
| 108 | 37.05 | humidity | 80.0 | 10 | < th | dose independent | sin | 4 | NA |
| 117 | 37.09 | humidity | 80.0 | 10 | > th | dose independent | rect. | 23 | 15 |
| 123 | 37.13 | humidity | 80.0 | 10 | > th | dose independent | rect. | 1 | 17 |
| 140 | 37.19 | humidity | 80.0 | 10 | > th | dose independent | sin | 4 | NA |
| 150 | 37.21 | humidity | 90.0 | 30 | < th | dose dependent | sin | 7 | NA |
| 164 | 37.35 | humidity | 80.0 | 90 | > th | dose independent | rect. | 23 | 10 |
| 208 | 37.55 | humidity | 70.0 | 30 | > th | dose dependent | rect. | 1 | 15 |
| 214 | 37.58 | humidity | 80.0 | 90 | > th | dose independent | rect. | 23 | 12 |
| 218 | 37.59 | humidity | 80.0 | 10 | > th | dose independent | rect. | 23 | 13 |
| 221 | 37.59 | radiation | 20.0 | 30 | < th | dose dependent | rect. | 23 | 21 |
| 224 | 37.63 | radiation | 30.0 | 90 | < th | dose dependent | rect. | 23 | 10 |
| 279 | 37.83 | humidity | 80.0 | 10 | < th | dose independent | rect. | 4 | 10 |
| 291 | 37.86 | humidity | 80.0 | 10 | < th | dose independent | rect. | 1 | 13 |
| 323 | 37.97 | humidity | 90.0 | 30 | < th | dose dependent | rect. | 20 | 14 |
| 330 | 37.99 | humidity | 90.0 | 90 | < th | dose independent | rect. | 19 | 16 |
| 331 | 37.99 | humidity | 80.0 | 10 | < th | dose independent | rect. | 22 | 16 |
| 336 | 38.01 | humidity | 90.0 | 90 | < th | dose independent | rect. | 19 | 19 |
| 357 | 38.05 | radiation | 1.0 | 270 | < th | dose independent | rect. | 22 | 19 |
| 389 | 38.11 | humidity | 80.0 | 10 | > th | dose independent | rect. | 23 | 11 |
| 404 | 38.15 | radiation | 10.0 | 30 | < th | dose independent | rect. | 23 | 21 |
| 414 | 38.17 | wind | 1.0 | 14400 | > th | dose independent | rect. | 4 | 2 |
| 435 | 38.21 | temperature | 15.0 | 270 | > th | dose independent | rect. | 18 | 16 |
| 468 | 38.27 | wind | 1.0 | 14400 | < th | dose independent | rect. | 4 | 2 |
| 475 | 38.29 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 486 | 38.31 | radiation | 10.0 | 90 | < th | dose independent | rect. | 23 | 10 |
| 505 | 38.34 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 19 | 6 |
| 529 | 38.38 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 557 | 38.42 | radiation | 30.0 | 90 | < th | dose dependent | sin | 7 | NA |
| 573 | 38.44 | wind | 1.0 | 14400 | < th | dose independent | rect. | 1 | 5 |
| 612 | 38.50 | radiation | 20.0 | 90 | < th | dose dependent | rect. | 23 | 17 |
| 614 | 38.51 | wind | 1.0 | 14400 | > th | dose independent | rect. | 1 | 5 |
| 630 | 38.53 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 688 | 38.62 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 22 | 19 |
| 722 | 38.68 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 18 | 16 |
| 727 | 38.68 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 18 | 16 |
| 731 | 38.69 | humidity | 90.0 | 90 | < th | dose independent | rect. | 19 | 22 |
| 791 | 38.76 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 20 | 6 |
| 798 | 38.77 | temperature | 15.0 | 270 | > th | dose independent | rect. | 17 | 6 |
| 861 | 38.84 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 885 | 38.87 | humidity | 70.0 | 30 | > th | dose dependent | rect. | 1 | 11 |
| 889 | 38.87 | humidity | 80.0 | 30 | > th | dose dependent | rect. | 1 | 23 |
| 904 | 38.89 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 19 | 1 |
| 912 | 38.90 | radiation | 1.0 | 270 | > th | dose independent | sin | 8 | NA |
| 919 | 38.90 | temperature | 15.0 | 270 | > th | dose independent | rect. | 6 | 16 |
| 936 | 38.92 | radiation | 1.0 | 30 | > th | dose dependent | sin | 8 | NA |
| 968 | 38.95 | humidity | 80.0 | 30 | > th | dose dependent | no | NA | NA |
| 971 | 38.95 | humidity | 80.0 | 30 | > th | dose dependent | rect. | 13 | 23 |
| 972 | 38.95 | humidity | 80.0 | 30 | > th | dose dependent | rect. | 15 | 23 |
| 984 | 38.96 | humidity | 80.0 | 30 | > th | dose dependent | rect. | 11 | 23 |
| 985 | 38.96 | humidity | 80.0 | 30 | > th | dose dependent | rect. | 17 | 23 |