Os08g0320100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : RNA-binding region RNP-1 (RNA recognition motif) domain containing protein.
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Os08g0320100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : RNA-binding region RNP-1 (RNA recognition motif) domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 33.05 | 0.27 | 11.1 | 0.737 | 0.219 | -0.486 | 1.07 | -0.516 | 0.135 | 21.3 | 0.1198 | 37 | -- | -- |
| 33.51 | 0.27 | 11.1 | 0.728 | 0.226 | -0.484 | 0.607 | -- | 0.138 | 20.7 | 0.12 | 36 | -- | -- |
| 34.32 | 0.273 | 11.1 | 0.682 | 0.254 | -0.517 | -- | 0.151 | 0.132 | 21.4 | 0.0001217 | 32 | -- | -- |
| 34.46 | 0.273 | 11.1 | 0.678 | 0.254 | -0.516 | -- | -- | 0.13 | 21.4 | 0.001874 | 32 | -- | -- |
| 36.32 | 0.281 | 11.1 | 0.662 | -- | -0.397 | -- | 0.0124 | 0.149 | -- | 0.009999 | 30 | -- | -- |
| 40.15 | 0.297 | 11.1 | 0.75 | 0.427 | -- | -0.0902 | -- | 0.14 | 13.2 | -- | -- | -- | -- |
| 40.18 | 0.297 | 11.1 | 0.747 | 0.427 | -- | -- | -- | 0.139 | 13.2 | -- | -- | -- | -- |
| 36.19 | 0.28 | 11.1 | 0.677 | -- | -0.378 | -- | -- | 0.148 | -- | 0.0499 | 33 | -- | -- |
| 47.02 | 0.319 | 11.1 | -- | 0.276 | -0.521 | -- | -- | 0.106 | 21.6 | 4.859e-06 | 33 | -- | -- |
| 51.48 | 0.335 | 11.1 | 0.731 | -- | -- | -- | -- | 0.131 | -- | -- | -- | -- | -- |
| 54.9 | 0.347 | 11.1 | -- | 0.415 | -- | -- | -- | 0.0561 | 13.2 | -- | -- | -- | -- |
| 49.12 | 0.326 | 11.2 | -- | -- | -0.398 | -- | -- | 0.0872 | -- | 0.007193 | 34 | -- | -- |
| 65.57 | 0.378 | 11.1 | -- | -- | -- | -- | -- | 0.0496 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 27.93 | atmosphere | 1015.0 | 90 | < th | dose dependent | rect. | 5 | 2 |
| 2 | 27.95 | atmosphere | 1010.0 | 90 | < th | dose independent | rect. | 5 | 2 |
| 3 | 27.99 | radiation | 20.0 | 90 | < th | dose dependent | rect. | 5 | 3 |
| 8 | 28.30 | humidity | 60.0 | 90 | > th | dose dependent | rect. | 5 | 2 |
| 14 | 28.51 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 7 | 22 |
| 15 | 28.51 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 7 | 22 |
| 20 | 28.69 | wind | 7.0 | 90 | < th | dose independent | rect. | 5 | 2 |
| 22 | 28.69 | temperature | 10.0 | 90 | > th | dose independent | rect. | 5 | 2 |
| 24 | 28.69 | temperature | 30.0 | 90 | < th | dose independent | rect. | 5 | 2 |
| 25 | 28.69 | humidity | 50.0 | 90 | > th | dose independent | rect. | 5 | 2 |
| 27 | 28.69 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 5 | 2 |
| 29 | 28.69 | radiation | 40.0 | 90 | < th | dose independent | rect. | 5 | 2 |
| 30 | 28.69 | temperature | 10.0 | 90 | > th | dose independent | rect. | 7 | 22 |
| 33 | 28.73 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 5 | 2 |
| 34 | 28.73 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 5 | 2 |
| 35 | 28.77 | wind | 9.0 | 1440 | < th | dose independent | rect. | 6 | 3 |
| 36 | 28.77 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 6 | 3 |
| 39 | 28.77 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 6 | 3 |
| 41 | 28.77 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 6 | 3 |
| 42 | 28.77 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 6 | 3 |
| 43 | 28.77 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 9 | 21 |
| 53 | 28.83 | humidity | 70.0 | 90 | > th | dose dependent | rect. | 5 | 4 |
| 56 | 28.88 | humidity | 80.0 | 30 | > th | dose independent | rect. | 5 | 3 |
| 57 | 28.88 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 5 | 13 |
| 59 | 28.90 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 5 | 2 |
| 66 | 28.93 | wind | 9.0 | 90 | < th | dose dependent | rect. | 5 | 2 |
| 78 | 28.98 | wind | 9.0 | 90 | < th | dose independent | rect. | 7 | 22 |
| 117 | 29.30 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 8 | 21 |
| 140 | 29.53 | wind | 1.0 | 10 | > th | dose independent | rect. | 5 | 3 |
| 152 | 29.63 | atmosphere | 1015.0 | 30 | < th | dose independent | rect. | 8 | 21 |
| 168 | 29.76 | wind | 1.0 | 270 | > th | dose independent | rect. | 4 | 2 |
| 177 | 29.79 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 6 | 2 |
| 197 | 29.88 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 5 | 3 |
| 198 | 29.90 | radiation | 20.0 | 90 | < th | dose dependent | rect. | 5 | 12 |
| 199 | 29.91 | atmosphere | 995.0 | 30 | > th | dose dependent | rect. | 5 | 3 |
| 272 | 30.14 | radiation | 20.0 | 270 | < th | dose dependent | rect. | 3 | 4 |
| 273 | 30.15 | humidity | 50.0 | 30 | > th | dose independent | rect. | 8 | 21 |
| 277 | 30.16 | wind | 9.0 | 30 | < th | dose dependent | rect. | 18 | 11 |
| 292 | 30.25 | humidity | 60.0 | 30 | > th | dose independent | rect. | 18 | 11 |
| 295 | 30.27 | radiation | 1.0 | 30 | < th | dose independent | rect. | 18 | 11 |
| 297 | 30.27 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 18 | 11 |
| 305 | 30.30 | wind | 7.0 | 30 | < th | dose independent | rect. | 18 | 11 |
| 327 | 30.36 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 5 | 4 |
| 330 | 30.38 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 18 | 11 |
| 333 | 30.38 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 18 | 11 |
| 342 | 30.41 | wind | 9.0 | 30 | < th | dose independent | rect. | 5 | 13 |
| 373 | 30.46 | temperature | 10.0 | 30 | > th | dose independent | rect. | 18 | 11 |
| 375 | 30.46 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 18 | 11 |
| 379 | 30.46 | temperature | 10.0 | 30 | > th | dose independent | rect. | 5 | 13 |
| 381 | 30.46 | atmosphere | 1015.0 | 30 | < th | dose independent | rect. | 5 | 13 |
| 442 | 30.58 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 5 | 13 |
| 450 | 30.58 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 5 | 13 |
| 465 | 30.62 | humidity | 50.0 | 30 | > th | dose independent | rect. | 5 | 13 |
| 466 | 30.62 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 5 | 13 |
| 485 | 30.66 | radiation | 10.0 | 90 | < th | dose dependent | rect. | 5 | 10 |
| 505 | 30.73 | wind | 1.0 | 90 | > th | dose independent | rect. | 8 | 20 |
| 564 | 30.83 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 3 | 3 |
| 571 | 30.85 | temperature | 30.0 | 30 | < th | dose independent | rect. | 18 | 11 |
| 579 | 30.86 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 19 | 11 |
| 582 | 30.86 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 19 | 11 |
| 587 | 30.86 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 19 | 11 |
| 589 | 30.86 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 19 | 11 |
| 590 | 30.86 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 19 | 11 |
| 599 | 30.86 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 6 | 13 |
| 658 | 30.97 | wind | 9.0 | 30 | < th | dose dependent | rect. | 20 | 9 |
| 678 | 31.04 | radiation | 20.0 | 30 | < th | dose independent | rect. | 5 | 13 |
| 680 | 31.05 | atmosphere | 1015.0 | 30 | < th | dose independent | rect. | 18 | 11 |
| 788 | 31.20 | wind | 9.0 | 30 | < th | dose dependent | rect. | 8 | 21 |
| 790 | 31.21 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 8 | 21 |
| 849 | 31.33 | temperature | 30.0 | 30 | < th | dose independent | rect. | 5 | 13 |
| 852 | 31.33 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 18 | 11 |
| 944 | 31.53 | wind | 5.0 | 30 | < th | dose independent | rect. | 20 | 9 |
| 989 | 31.62 | radiation | 40.0 | 1440 | < th | dose dependent | rect. | 19 | 10 |