BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0320100 Os08g0320100|AK121802
(350 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0320100 RNA-binding region RNP-1 (RNA recognition moti... 427 e-120
Os08g0492100 Paraneoplastic encephalomyelitis antigen famil... 239 3e-63
Os02g0221500 Paraneoplastic encephalomyelitis antigen famil... 187 1e-47
AK120313 185 5e-47
Os11g0637700 RNA-binding region RNP-1 (RNA recognition moti... 147 1e-35
Os06g0566100 RNA-binding region RNP-1 (RNA recognition moti... 145 4e-35
Os07g0584500 RNA-binding region RNP-1 (RNA recognition moti... 135 4e-32
Os10g0470900 RNA-binding region RNP-1 (RNA recognition moti... 126 3e-29
Os01g0636700 RNA-binding region RNP-1 (RNA recognition moti... 93 2e-19
Os01g0945800 RNA-binding region RNP-1 (RNA recognition moti... 89 6e-18
Os09g0565200 Similar to Nucleic acid-binding protein precursor 75 1e-13
Os10g0151800 RNA-binding region RNP-1 (RNA recognition moti... 73 3e-13
Os01g0766700 73 4e-13
Os03g0681900 Similar to RGP-3 (Fragment) 72 7e-13
Os08g0557100 Similar to Nucleic acid-binding protein precursor 72 8e-13
Os07g0124600 RNA-binding region RNP-1 (RNA recognition moti... 70 2e-12
Os04g0682400 RNA-binding region RNP-1 (RNA recognition moti... 70 3e-12
Os03g0376600 Similar to 29 kDa ribonucleoprotein, chloropla... 67 3e-11
Os07g0187300 RNA-binding region RNP-1 (RNA recognition moti... 66 4e-11
>Os08g0320100 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 350
Score = 427 bits (1097), Expect = e-120, Method: Compositional matrix adjust.
Identities = 215/232 (92%), Positives = 215/232 (92%)
Query: 1 MAGGKMKEHDGASPAKIFIGGLPKDTTMGTFKEYFGKYGEIVDAVIMKDRFTQKPRGFGF 60
MAGGKMKEHDGASPAKIFIGGLPKDTTMGTFKEYFGKYGEIVDAVIMKDRFTQKPRGFGF
Sbjct: 1 MAGGKMKEHDGASPAKIFIGGLPKDTTMGTFKEYFGKYGEIVDAVIMKDRFTQKPRGFGF 60
Query: 61 ITFADPAVVDRVIEDNHVINGKEVEIKRTIPKGAAPLKDFKTKKIFVGGLPSALXXXXXX 120
ITFADPAVVDRVIEDNHVINGKEVEIKRTIPKGAAPLKDFKTKKIFVGGLPSAL
Sbjct: 61 ITFADPAVVDRVIEDNHVINGKEVEIKRTIPKGAAPLKDFKTKKIFVGGLPSALKEDEFK 120
Query: 121 XXXXXXXXXXXHEIIRDHSTNRSRGFGFVVFDAEKTVDELLAKKGNMIDLNGSQVEIKKA 180
HEIIRDHSTNRSRGFGFVVFDAEKTVDELLAKKGNMIDLNGSQVEIKKA
Sbjct: 121 EFFSKFGKVVEHEIIRDHSTNRSRGFGFVVFDAEKTVDELLAKKGNMIDLNGSQVEIKKA 180
Query: 181 EPKKPSNPPHRSFDSEPRGRPHADGYDGLGNSYNYGGSFGPYRSPGSFGTRP 232
EPKKPSNPPHRSFDSEPRGRPHADGYDGLGNSYNYGGSFGPYRSPGSFGTRP
Sbjct: 181 EPKKPSNPPHRSFDSEPRGRPHADGYDGLGNSYNYGGSFGPYRSPGSFGTRP 232
>Os08g0492100 Paraneoplastic encephalomyelitis antigen family protein
Length = 362
Score = 239 bits (609), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 130/221 (58%), Positives = 158/221 (71%), Gaps = 11/221 (4%)
Query: 16 KIFIGGLPKDTTMGTFKEYFGKYGEIVDAVIMKDRFTQKPRGFGFITFADPAVVDRVIED 75
KIF+GGLP+DTT F ++FG+YGEIVD+VIM+D+ T +PRGFGFIT+++PAVVDRV++D
Sbjct: 24 KIFVGGLPRDTTEADFVKHFGQYGEIVDSVIMRDKHTSQPRGFGFITYSNPAVVDRVMDD 83
Query: 76 NHVINGKEVEIKRTIPKGAAPLKDFKTKKIFVGGLPSALXXXXXXXXXXXXXXXXXHEII 135
H NGK+VEIKRTIPK + KDFKTKKIFVGGLP AL H+I+
Sbjct: 84 IHEFNGKQVEIKRTIPKDSVQSKDFKTKKIFVGGLPQALTEDDFKHFFQKYGPVVDHQIM 143
Query: 136 RDHSTNRSRGFGFVVFDAEKTVDELLAKKGNMIDLNGSQVEIKKAEPKKPSNPPHRSFDS 195
RDH T RSRGFGF+VF +++ VD+LLA GNMIDL G++VEIKKAEPKK SNPP S S
Sbjct: 144 RDHQTKRSRGFGFIVFSSDQVVDDLLA-NGNMIDLAGAKVEIKKAEPKKSSNPPPSSHGS 202
Query: 196 EPR------GRPHADG--YDGLGNSY-NY-GGSFGPYRSPG 226
R R H+ G Y GL N+Y NY G FGPYR+ G
Sbjct: 203 ASRSAYGRDSRGHSSGNDYGGLANAYSNYNSGGFGPYRNHG 243
>Os02g0221500 Paraneoplastic encephalomyelitis antigen family protein
Length = 397
Score = 187 bits (474), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 94/175 (53%), Positives = 126/175 (72%), Gaps = 2/175 (1%)
Query: 11 GASPAKIFIGGLPKDTTMGTFKEYFGKYGEIVDAVIMKDRFTQKPRGFGFITFADPAVVD 70
G S KIF+GG+ +TT +F ++F KYG I D+VIMKD+ T+ PRGFGF+TF+DP+V+D
Sbjct: 62 GDSSGKIFVGGVAWETTEESFSKHFEKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVID 121
Query: 71 RVIEDNHVINGKEVEIKRTIPKGAAPLKDF-KTKKIFVGGLPSALXXXXXXXXXXXXXXX 129
+V+ED HVI+G+ VE+KRT+P+ KD KT+KIFVGGLPS+L
Sbjct: 122 KVLEDEHVIDGRTVEVKRTVPREEMSSKDGPKTRKIFVGGLPSSLTEDELREHFSPYGKI 181
Query: 130 XXHEIIRDHSTNRSRGFGFVVFDAEKTVDELLAKKGNMIDLNGSQVEIKKAEPKK 184
H+I+ DHST RSRGFGFV F++E +V+ +++ +G M DL G QVEIKKAEPKK
Sbjct: 182 VEHQIMLDHSTGRSRGFGFVTFESEDSVERVIS-EGRMRDLGGKQVEIKKAEPKK 235
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 40/90 (44%), Positives = 54/90 (60%), Gaps = 2/90 (2%)
Query: 5 KMKEHDGASPAKIFIGGLPKDTTMGTFKEYFGKYGEIVDAVIMKDRFTQKPRGFGFITFA 64
+M DG KIF+GGLP T +E+F YG+IV+ IM D T + RGFGF+TF
Sbjct: 145 EMSSKDGPKTRKIFVGGLPSSLTEDELREHFSPYGKIVEHQIMLDHSTGRSRGFGFVTFE 204
Query: 65 DPAVVDRVIEDNHV--INGKEVEIKRTIPK 92
V+RVI + + + GK+VEIK+ PK
Sbjct: 205 SEDSVERVISEGRMRDLGGKQVEIKKAEPK 234
>AK120313
Length = 409
Score = 185 bits (469), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 93/175 (53%), Positives = 125/175 (71%), Gaps = 2/175 (1%)
Query: 11 GASPAKIFIGGLPKDTTMGTFKEYFGKYGEIVDAVIMKDRFTQKPRGFGFITFADPAVVD 70
G S KIF+GG+ +TT +F ++F KYG I D+VIMKD+ T+ PRG GF+TF+DP+V+D
Sbjct: 74 GDSSGKIFVGGVAWETTEESFSKHFEKYGAITDSVIMKDKHTKMPRGSGFVTFSDPSVID 133
Query: 71 RVIEDNHVINGKEVEIKRTIPKGAAPLKDF-KTKKIFVGGLPSALXXXXXXXXXXXXXXX 129
+V+ED HVI+G+ VE+KRT+P+ KD KT+KIFVGGLPS+L
Sbjct: 134 KVLEDEHVIDGRTVEVKRTVPREEMSSKDGPKTRKIFVGGLPSSLTEDELREHFSPYGKI 193
Query: 130 XXHEIIRDHSTNRSRGFGFVVFDAEKTVDELLAKKGNMIDLNGSQVEIKKAEPKK 184
H+I+ DHST RSRGFGFV F++E +V+ +++ +G M DL G QVEIKKAEPKK
Sbjct: 194 VEHQIMLDHSTGRSRGFGFVTFESEDSVERVIS-EGRMRDLGGKQVEIKKAEPKK 247
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/90 (44%), Positives = 54/90 (60%), Gaps = 2/90 (2%)
Query: 5 KMKEHDGASPAKIFIGGLPKDTTMGTFKEYFGKYGEIVDAVIMKDRFTQKPRGFGFITFA 64
+M DG KIF+GGLP T +E+F YG+IV+ IM D T + RGFGF+TF
Sbjct: 157 EMSSKDGPKTRKIFVGGLPSSLTEDELREHFSPYGKIVEHQIMLDHSTGRSRGFGFVTFE 216
Query: 65 DPAVVDRVIEDNHV--INGKEVEIKRTIPK 92
V+RVI + + + GK+VEIK+ PK
Sbjct: 217 SEDSVERVISEGRMRDLGGKQVEIKKAEPK 246
>Os11g0637700 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 467
Score = 147 bits (371), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 85/194 (43%), Positives = 114/194 (58%), Gaps = 15/194 (7%)
Query: 12 ASPAKIFIGGLPKDTTMGTFKEYFGKYGEIVDAVIMKDRFTQKPRGFGFITFADPAVVDR 71
A K+FIGG+ DT +EYF KYGE+V+AVIM+DR T + RGFGFI FADPAV +R
Sbjct: 3 ADAGKLFIGGISWDTNEDRLREYFDKYGEVVEAVIMRDRATGRARGFGFIVFADPAVAER 62
Query: 72 VIEDNHVINGKEVEIKRTIPK----------GAAPLK--DFKTKKIFVGGLPSALXXXXX 119
VI + H+I+G+ VE K+ +P+ G+A +TKKIFVGGL S +
Sbjct: 63 VIMEKHMIDGRMVEAKKAVPRDDQHALSKSGGSAHGSPGPSRTKKIFVGGLASTVTEADF 122
Query: 120 XXXXXXXXXXXXHEIIRDHSTNRSRGFGFVVFDAEKTVDELLAKKGNMIDLNGSQVEIKK 179
++ DH+T R RGFGF+ +D+E VD+ L K +LNG VE+K+
Sbjct: 123 RKYFEQFGTITDVVVMYDHNTQRPRGFGFITYDSEDAVDKALFKT--FHELNGKMVEVKR 180
Query: 180 AEPKKPS-NPPHRS 192
A PK+ S P RS
Sbjct: 181 AVPKELSPGPSMRS 194
>Os06g0566100 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 285
Score = 145 bits (366), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 72/140 (51%), Positives = 97/140 (69%), Gaps = 2/140 (1%)
Query: 47 MKDRFTQKPRGFGFITFADPAVVDRVIEDNHVINGKEVEIKRTIPKGAAPLKDF-KTKKI 105
MKD+ T+ PRGFGF+TF+DP+V+D+V++D H I+G+ VE+KRT+P+ KD KT+KI
Sbjct: 1 MKDKHTKMPRGFGFVTFSDPSVIDKVLQDEHTIDGRTVEVKRTVPREEMSSKDGPKTRKI 60
Query: 106 FVGGLPSALXXXXXXXXXXXXXXXXXHEIIRDHSTNRSRGFGFVVFDAEKTVDELLAKKG 165
FVGG+P +L H+I+ DH T RSRGFGFV F+ E V+ +++ +G
Sbjct: 61 FVGGIPPSLTEDKLKEHFSSYGKVVEHQIMLDHGTGRSRGFGFVTFENEDAVERVMS-EG 119
Query: 166 NMIDLNGSQVEIKKAEPKKP 185
M DL G QVEIKKAEPKKP
Sbjct: 120 RMHDLAGKQVEIKKAEPKKP 139
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 39/90 (43%), Positives = 55/90 (61%), Gaps = 2/90 (2%)
Query: 5 KMKEHDGASPAKIFIGGLPKDTTMGTFKEYFGKYGEIVDAVIMKDRFTQKPRGFGFITFA 64
+M DG KIF+GG+P T KE+F YG++V+ IM D T + RGFGF+TF
Sbjct: 48 EMSSKDGPKTRKIFVGGIPPSLTEDKLKEHFSSYGKVVEHQIMLDHGTGRSRGFGFVTFE 107
Query: 65 DPAVVDRVIEDN--HVINGKEVEIKRTIPK 92
+ V+RV+ + H + GK+VEIK+ PK
Sbjct: 108 NEDAVERVMSEGRMHDLAGKQVEIKKAEPK 137
>Os07g0584500 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 472
Score = 135 bits (340), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 74/194 (38%), Positives = 108/194 (55%), Gaps = 15/194 (7%)
Query: 12 ASPAKIFIGGLPKDTTMGTFKEYFGKYGEIVDAVIMKDRFTQKPRGFGFITFADPAVVDR 71
A K+F+GG+ +T +EYF ++GE+ +AVIM+DR T + RGFGF+ F D V +R
Sbjct: 3 ADSGKLFVGGISWETDEDRLREYFSRFGEVTEAVIMRDRNTGRARGFGFVVFTDAGVAER 62
Query: 72 VIEDNHVINGKEVEIKRTIPKGAAPLKD------------FKTKKIFVGGLPSALXXXXX 119
V D H+I+G+ VE K+ +P+ + +T+KIFVGGL S +
Sbjct: 63 VTMDKHMIDGRMVEAKKAVPRDDQSITSKNNGSSIGSPGPGRTRKIFVGGLASNVTEVEF 122
Query: 120 XXXXXXXXXXXXHEIIRDHSTNRSRGFGFVVFDAEKTVDELLAKKGNMIDLNGSQVEIKK 179
++ DH+T R RGFGF+ +D+E VD+ L K N +LNG VE+K+
Sbjct: 123 RRYFEQFGVITDVVVMYDHNTQRPRGFGFITYDSEDAVDKALHK--NFHELNGKMVEVKR 180
Query: 180 AEPKKPS-NPPHRS 192
A PK+ S P RS
Sbjct: 181 AVPKEQSPGPAARS 194
>Os10g0470900 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 464
Score = 126 bits (316), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 79/246 (32%), Positives = 118/246 (47%), Gaps = 48/246 (19%)
Query: 16 KIFIGGLPKDTTMGTFKEYFGKYGEIVDAVIMKDRFTQKPRGFGFITFADPAVVDRVIED 75
K+FIGG+ +TT +++F YG++ A +M+D+ T +PRGFGF+ F+DP+ VD + D
Sbjct: 7 KLFIGGISWETTEEKLRDHFAAYGDVSQAAVMRDKLTGRPRGFGFVVFSDPSSVDAALVD 66
Query: 76 NHVINGKEVEIKRTI-------PKGAAP---------------------------LKDFK 101
H ++G+ V++KR + K A P +
Sbjct: 67 PHTLDGRTVDVKRALSREEQQAAKAANPSAGGRHASGGGGGGGGAGGGGGGGGGDAGGAR 126
Query: 102 TKKIFVGGLPSALXXXXXXXXXXXXXXXXXHEIIRDHSTNRSRGFGFVVFDAEKTVDELL 161
TKKIFVGGLPS L ++ D +T R RGFGF+ FDAE VD +L
Sbjct: 127 TKKIFVGGLPSNLTEDEFRQYFQTYGVVTDVVVMYDQNTQRPRGFGFITFDAEDAVDRVL 186
Query: 162 AKKGNMIDLNGSQVEIKKAEPKKPSNP-----------PHRSFDSEPRGRPHADGYDGLG 210
K DL+G VE+K+A P++ +NP + S ++ GYD G
Sbjct: 187 HK--TFHDLSGKMVEVKRALPRE-ANPGSGSGGRSMGGGGGGYQSNNGPNSNSGGYDSRG 243
Query: 211 NSYNYG 216
++ YG
Sbjct: 244 DASRYG 249
>Os01g0636700 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 469
Score = 93.2 bits (230), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/173 (32%), Positives = 94/173 (54%), Gaps = 3/173 (1%)
Query: 10 DGASPA-KIFIGGLPKDTTMGTFKEYFGKYGEIVDAVIMKDRFTQKPRGFGFITFADPAV 68
+G+S A ++ I GLP + + +YF KYG+IVD +I++ + T + IT+AD A+
Sbjct: 9 EGSSHAGQVVIRGLPSELSYADLADYFIKYGKIVDLIIIRAKGTAQAGDSAKITYADAAI 68
Query: 69 VDRVIEDNHVINGKEVEIKRTIPKGAAPLKDFKT-KKIFVGGLPSALXXXXXXXXXXXXX 127
D++I+ H+I GK V + RT+ + KD KT ++I + GLP +
Sbjct: 69 SDKIIKCRHIIKGKHVVVDRTLMEDTIQYKDKKTNRRITLDGLPWTVSNDDIVHFFSPYG 128
Query: 128 XXXXHEIIRDHSTNRSRGFGFVVFDAEKTVDELLAKKGNMIDLNGSQVEIKKA 180
H+I + S G GFV+F +E V ++L+ GN ++L G +V I ++
Sbjct: 129 TVVDHQITQKDENKLSEGSGFVLFSSELAVIKILS-NGNTVNLGGEKVSINRS 180
>Os01g0945800 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 363
Score = 88.6 bits (218), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 90/179 (50%), Gaps = 6/179 (3%)
Query: 16 KIFIGGLPKDTTMGTFKEYFGKYGEIVDAVIMKDRFTQKPRGFGFITFADPAVVDRVIED 75
K+ + G+P D +EY GK+G + D V+MK+R + + RGFG++TF+ V+E
Sbjct: 4 KLVVLGIPWDVDTEGLREYMGKFGPLDDCVVMKERSSGRSRGFGYVTFSSADDAKNVLEC 63
Query: 76 NHVINGKEVEIKRTIPKGAAPLK-DFKTKKIFVGGLPSALXXXXXXXXXXXXXXXXXHEI 134
HV+ + +E+K PK + K +IFV +P ++ +
Sbjct: 64 EHVLGNRTLEVKIATPKEEMKSQGSKKATRIFVARIPQSVDESMFRRHFEAYGEITDLYM 123
Query: 135 IRDHSTNRSRGFGFVVFDAEKTVDELLAKKGNMIDLNGSQVEIKKAEPK--KPSNPPHR 191
++H + RG GF+ F + ++VD ++ + +L+G+ V + +A PK + PP R
Sbjct: 124 PKEHGSKGHRGIGFITFQSAESVDSIMQ---DSHELDGTTVVVDRATPKDEEVRYPPSR 179
Score = 75.5 bits (184), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 41/89 (46%), Positives = 48/89 (53%)
Query: 3 GGKMKEHDGASPAKIFIGGLPKDTTMGTFKEYFGKYGEIVDAVIMKDRFTQKPRGFGFIT 62
GG G KIF+G LP++ + YFGK+G IVDA I KD RGFGF+T
Sbjct: 218 GGYYGSSQGMGNKKIFVGRLPQEANTEDLRHYFGKFGRIVDAYIPKDPKRSGHRGFGFVT 277
Query: 63 FADPAVVDRVIEDNHVINGKEVEIKRTIP 91
FAD V DRV +H I G EV I P
Sbjct: 278 FADEGVADRVARRSHEILGHEVAIDTAAP 306
>Os09g0565200 Similar to Nucleic acid-binding protein precursor
Length = 322
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 88/185 (47%), Gaps = 11/185 (5%)
Query: 15 AKIFIGGLPKDTTMGTFKEYFGKYGEIVDAVIMKDRFTQKPRGFGFITFADPAVVDRVIE 74
AK+++G LP D + F + G + + ++ +R T + RGFGF+T + ++ +E
Sbjct: 143 AKVYVGNLPYDIDSERLAQLFEQAGIVEVSEVIYNRETDRSRGFGFVTMSTVEEAEKAVE 202
Query: 75 DNHV--INGKEVEIKRTIPKGA---APLKDF-KTKKIFVGGLPSALXXXXXXXXXXXXXX 128
H ++G+ + + + P+GA P + F + +I+VG LP +
Sbjct: 203 MFHRYDVDGRLLTVNKAAPRGARVERPPRQFGPSFRIYVGNLPWQVDDSRLVQLFSEHGK 262
Query: 129 XXXHEIIRDHSTNRSRGFGFVVFDAEKTVDELLAKKGNMIDLNGSQVEIKKAEPKKPSNP 188
++ D T RSRGFGFV ++ +D+ +A L+G + + AE + P
Sbjct: 263 VVDARVVYDRETGRSRGFGFVTMATQEELDDAIAALDGQ-SLDGRALRVNVAEER----P 317
Query: 189 PHRSF 193
P R F
Sbjct: 318 PRRGF 322
>Os10g0151800 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 472
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 81/172 (47%), Gaps = 11/172 (6%)
Query: 15 AKIFIGGLPKDTTMGTFKEYFGKYGEIVDAVIMKDRFTQKPRGFGFITFADPAVVDRVIE 74
+++FIGGLP+DTT E +GEI + +MKD+ T++ +GF F+TF R IE
Sbjct: 109 SEVFIGGLPRDTTEDDLHELCEAFGEISEVRLMKDKETKENKGFAFVTFTGKDGAQRAIE 168
Query: 75 DNHVINGKEVEIKRTIPKGAAPLKDFKTKKIFVGGLPSALXXXXXXXXXXXXXXXXXH-E 133
D H K ++ ++ + ++FVG +P L + E
Sbjct: 169 DLHDKEHKGRTLRCSLSQA--------KHRLFVGNVPKGLSEDELRNIIQGKGPGVVNIE 220
Query: 134 IIRD-HSTNRSRGFGFVVFDAEKTVDELLAK-KGNMIDLNGSQVEIKKAEPK 183
+ +D H +R+RGF FV + D K ++GSQ+ + AEPK
Sbjct: 221 MFKDLHDPSRNRGFLFVEYYNHACADYAKQKLSAPNFKVDGSQLTVSWAEPK 272
>Os01g0766700
Length = 345
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Query: 16 KIFIGGLPKDTTMGTFKEYFGKYGEIVDAVIMKDRFTQKPRGFGFITFADPAVVDRVI-E 74
KIF+GGLP T KEYF K+GE+ A+++ D T+ PRGFGFI FA R + +
Sbjct: 125 KIFVGGLPVSATEKKLKEYFNKFGEVNRAIVVIDLNTKMPRGFGFIQFASEESTARALKK 184
Query: 75 DNHVINGKEVEIKRTIPK 92
D H + G+ VE+ +PK
Sbjct: 185 DKHFLCGQWVEVSLAMPK 202
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 82/179 (45%), Gaps = 9/179 (5%)
Query: 13 SPAKIFIGGLPKDTTMGTFKEYFGKYGEIVDAVIMKDRFTQKPRGFGFITFADP---AVV 69
S K+F+GG+P T+ + +F ++G + K++ T RGF F+ F +P A
Sbjct: 27 SHGKVFVGGVPLGTSESELRAHFSRFGTVAFVGAPKNKQTGAARGFAFVQFVNPDDAAAA 86
Query: 70 DRVIEDNHVINGKEVEIKRTIPKGAAPLKDF----KTKKIFVGGLPSALXXXXXXXXXXX 125
D +VI G ++IK K +A + +KIFVGGLP +
Sbjct: 87 IAAGPDRNVIRGTTMDIKLAQLKPSAGGPQLSPGDQKRKIFVGGLPVSATEKKLKEYFNK 146
Query: 126 XXXXXXHEIIRDHSTNRSRGFGFVVFDAEKTVDELLAKKGNMIDLNGSQVEIKKAEPKK 184
++ D +T RGFGF+ F +E++ L K + L G VE+ A PK+
Sbjct: 147 FGEVNRAIVVIDLNTKMPRGFGFIQFASEESTARALKKDKHF--LCGQWVEVSLAMPKQ 203
>Os03g0681900 Similar to RGP-3 (Fragment)
Length = 308
Score = 71.6 bits (174), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 52/84 (61%), Gaps = 2/84 (2%)
Query: 11 GASPAKIFIGGLPKDTTMGTFKEYFGKYGEIVDAVIMKDRFTQKPRGFGFITFADPAVVD 70
G +IF+GGL T + F ++G++VDA IM +R TQ+ RGFGF+TF+DP VD
Sbjct: 3 GKEEGRIFVGGLSFHTDERKLADAFRRFGKVVDAQIMLERHTQRHRGFGFVTFSDPEAVD 62
Query: 71 RVIEDNHV--INGKEVEIKRTIPK 92
I++ H ++G+ + + + PK
Sbjct: 63 SAIKEMHCQELDGRTISVNKAEPK 86
>Os08g0557100 Similar to Nucleic acid-binding protein precursor
Length = 194
Score = 71.6 bits (174), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 87/185 (47%), Gaps = 12/185 (6%)
Query: 15 AKIFIGGLPKDTTMGTFKEYFGKYGEIVDAVIMKDRFTQKPRGFGFITFADPAVVDRVIE 74
AK+++G LP D + F + G + A ++ +R T + RGFGF+T + D+ IE
Sbjct: 16 AKVYVGNLPYDVDSEGLAQLFEQAGVVEVAEVIYNRETGQSRGFGFVTMSTIEEADKAIE 75
Query: 75 --DNHVINGKEVEIKRTIPKGA---APLKDFKTK-KIFVGGLPSALXXXXXXXXXXXXXX 128
+ + ING+ + + R P+G+ P + F + +VG LP +
Sbjct: 76 MLNRYDINGRLLNVNRAAPRGSRVERPPRQFAPAFRAYVGNLPWQVDDSRLLQLFSEHGE 135
Query: 129 XXXHEIIRDHSTNRSRGFGFVVFDAEKTVDELLAKKGNMIDLNGSQVEIKKAEPKKPSNP 188
++ D + RSRGFGFV +++ +D+ ++ L+G +++ + +
Sbjct: 136 VVNASVVYDRESGRSRGFGFVSMASKEELDDAISA------LDGQELDGRPLRVNVAAER 189
Query: 189 PHRSF 193
P R F
Sbjct: 190 PQRGF 194
>Os07g0124600 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 377
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 50/85 (58%), Gaps = 1/85 (1%)
Query: 16 KIFIGGLPKDTTMGTFKEYFGKYGEIVDAVIMKDRFTQKPRGFGFITFADPAVVDRVIED 75
K+FIGGL + T FK YF +G + D V++ D T + RGFGF+TF V +VIE
Sbjct: 145 KVFIGGLRDNITEEEFKTYFESFGTVTDVVVIYDSMTNRSRGFGFVTFDSEEAVRKVIEH 204
Query: 76 N-HVINGKEVEIKRTIPKGAAPLKD 99
+ H + G VE K IPK A+ ++
Sbjct: 205 SFHDLKGTRVEAKIAIPKDASYYRN 229
>Os04g0682400 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 1008
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 96/211 (45%), Gaps = 19/211 (9%)
Query: 3 GGKMKEHDGASPAKIFIGGLPKDTTMGTFKEYFGKYGEIVDAVIMKDRFTQKPRGFGFIT 62
GGK+KE D + +++G LP E F +G+IV + ++ D FT +G+GF+
Sbjct: 284 GGKLKEVDNTN---LYVGNLPASVGSHKLIELFLPFGQIVRSRVVDDCFTGLSQGYGFVK 340
Query: 63 FADPAVVDRVIE--DNHVINGKEVEIKRT-IP----KGAAPLKDFKTKKIFVGGLPSALX 115
++DP I+ + ++ G ++++ T P P K+ K++V L ++
Sbjct: 341 YSDPRCASEAIKRMNGRLVEGTALKVRVTGFPSSEDNSQQPSKETDMAKLYVCNLSLSMN 400
Query: 116 XXXXXXXXXXXXXXXXHEIIRDHSTNRSRGFGFVVFDAEKTVDELLAKKGNMIDLNGSQV 175
++ +DH+T S+G+GFV + + E + I LNG V
Sbjct: 401 TDRLIHLFLPFGEVTNAKVAKDHTTGLSKGYGFVQYSSPHHAAEAV------IHLNGRLV 454
Query: 176 EIKKAEPKK---PSNPPHRSFDSEPRGRPHA 203
+ +K E + PS P+ + +S R A
Sbjct: 455 DGRKIEVRVSGIPSTLPNSAVESPSTTRNSA 485
>Os03g0376600 Similar to 29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29)
Length = 265
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 41/184 (22%), Positives = 84/184 (45%), Gaps = 11/184 (5%)
Query: 16 KIFIGGLPKDTTMGTFKEYFGKYGEIVDAVIMKDRFTQKPRGFGFITFADPAVVDRVIE- 74
++F+G LP F + G + ++ D+ T + RGFGF+T + V+ +E
Sbjct: 87 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSSVEEVEAAVEQ 146
Query: 75 -DNHVINGKEVEIKRTIP----KGAAPLKDFKTKKIFVGGLPSALXXXXXXXXXXXXXXX 129
+ ++++G+ + + P + + + +++VG L +
Sbjct: 147 FNGYILDGRSLRVNSGPPPPREQSSQRAPRGEANRVYVGNLSWGVDNAALANLFSGEGEV 206
Query: 130 XXHEIIRDHSTNRSRGFGFVVFDAEKTVDELLAKKGNMIDLNGSQVEIKKAEPKKPSNPP 189
++I D + RSRGFGFV + + + V+ ++ + D++G Q+ + AE K PP
Sbjct: 207 LEAKVIYDRESGRSRGFGFVTYGSAEEVENAVSNL-DGADMDGRQIRVTVAESK----PP 261
Query: 190 HRSF 193
R +
Sbjct: 262 RRQY 265
>Os07g0187300 RNA-binding region RNP-1 (RNA recognition motif) domain
containing protein
Length = 308
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 50/79 (63%), Gaps = 2/79 (2%)
Query: 16 KIFIGGLPKDTTMGTFKEYFGKYGEIVDAVIMKDRFTQKPRGFGFITFADPAVVDRVIED 75
+IF+GGL DTT T + F +YG++++ ++ +R T + RGFGF+TF++P VD I
Sbjct: 8 RIFVGGLSWDTTERTLERAFSEYGKVIETQVVLERDTGRSRGFGFVTFSEPRAVDAAIRG 67
Query: 76 NH--VINGKEVEIKRTIPK 92
H ++G+ + + + P+
Sbjct: 68 MHNGELDGRTISVNKAQPR 86
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.140 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,866,349
Number of extensions: 379736
Number of successful extensions: 1466
Number of sequences better than 1.0e-10: 20
Number of HSP's gapped: 1422
Number of HSP's successfully gapped: 27
Length of query: 350
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 248
Effective length of database: 11,709,973
Effective search space: 2904073304
Effective search space used: 2904073304
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 156 (64.7 bits)