Os01g0636700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : RNA-binding region RNP-1 (RNA recognition motif) domain containing protein.
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Os01g0636700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : RNA-binding region RNP-1 (RNA recognition motif) domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 55.75 | 0.351 | 8.84 | -1.16 | 0.53 | 0.573 | -0.0039 | -0.0997 | 0.0719 | 9.02 | 21.8 | 1239 | -- | -- |
| 55.71 | 0.348 | 8.83 | -1.13 | 0.551 | 0.566 | 0.0271 | -- | 0.0852 | 9.03 | 21.85 | 1138 | -- | -- |
| 55.68 | 0.348 | 8.84 | -1.15 | 0.551 | 0.554 | -- | -0.0969 | 0.0739 | 9.03 | 21.9 | 1138 | -- | -- |
| 55.59 | 0.347 | 8.83 | -1.07 | 0.573 | 0.518 | -- | -- | 0.079 | 9.09 | 22.22 | 1025 | -- | -- |
| 70.69 | 0.392 | 8.84 | -1.08 | -- | 0.512 | -- | -0.0543 | 0.0986 | -- | 22.22 | 1500 | -- | -- |
| 66.73 | 0.383 | 8.79 | -0.899 | 0.507 | -- | 0.0339 | -- | 0.254 | 8.69 | -- | -- | -- | -- |
| 66.73 | 0.383 | 8.79 | -0.898 | 0.507 | -- | -- | -- | 0.254 | 8.7 | -- | -- | -- | -- |
| 70.67 | 0.392 | 8.85 | -1.09 | -- | 0.532 | -- | -- | 0.0782 | -- | 22.24 | 1500 | -- | -- |
| 83.88 | 0.427 | 8.81 | -- | 0.564 | 0.341 | -- | -- | 0.255 | 8.86 | 22.4 | 890 | -- | -- |
| 81.25 | 0.421 | 8.81 | -0.897 | -- | -- | -- | -- | 0.258 | -- | -- | -- | -- | -- |
| 87.97 | 0.439 | 8.77 | -- | 0.505 | -- | -- | -- | 0.354 | 8.83 | -- | -- | -- | -- |
| 99.15 | 0.464 | 8.81 | -- | -- | 0.28 | -- | -- | 0.272 | -- | 22.39 | 1472 | -- | -- |
| 102.46 | 0.472 | 8.79 | -- | -- | -- | -- | -- | 0.358 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 55.33 | temperature | 30 | 10 | < th | dose dependent | rect. | 10 | 7 |
| 3 | 55.38 | radiation | 30 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 4 | 55.43 | radiation | 40 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 6 | 55.45 | radiation | 40 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 8 | 55.47 | radiation | 40 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 9 | 55.48 | radiation | 40 | 43200 | > th | dose independent | rect. | 11 | 3 |
| 12 | 55.55 | radiation | 20 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 16 | 55.58 | radiation | 30 | 43200 | > th | dose dependent | rect. | 11 | 1 |
| 23 | 55.62 | radiation | 20 | 43200 | > th | dose dependent | rect. | 11 | 3 |
| 48 | 55.76 | temperature | 25 | 270 | < th | dose independent | rect. | 9 | 5 |
| 49 | 55.76 | radiation | 40 | 43200 | < th | dose dependent | rect. | 13 | 1 |
| 65 | 55.82 | wind | 3 | 14400 | < th | dose dependent | rect. | 22 | 1 |
| 68 | 55.82 | wind | 1 | 14400 | < th | dose dependent | rect. | 22 | 4 |
| 203 | 55.92 | radiation | 30 | 43200 | < th | dose independent | sin | 23 | NA |
| 399 | 55.96 | radiation | 30 | 43200 | < th | dose independent | rect. | 2 | 23 |
| 423 | 55.97 | radiation | 30 | 43200 | < th | dose independent | no | NA | NA |
| 426 | 55.97 | humidity | 60 | 43200 | < th | dose independent | rect. | 20 | 14 |
| 709 | 56.11 | radiation | 20 | 43200 | > th | dose dependent | sin | 21 | NA |
| 760 | 56.13 | radiation | 40 | 43200 | > th | dose independent | sin | 20 | NA |
| 800 | 56.13 | humidity | 80 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 803 | 56.13 | temperature | 30 | 10 | < th | dose dependent | rect. | 11 | 18 |
| 861 | 56.15 | humidity | 60 | 43200 | > th | dose independent | rect. | 20 | 14 |
| 885 | 56.16 | humidity | 60 | 43200 | < th | dose independent | rect. | 8 | 2 |
| 907 | 56.16 | radiation | 20 | 43200 | > th | dose dependent | no | NA | NA |