BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0636700 Os01g0636700|AK099822
(469 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0636700 RNA-binding region RNP-1 (RNA recognition moti... 970 0.0
Os01g0102800 DEAD/DEAH box helicase, N-terminal domain cont... 170 2e-42
Os04g0692750 DEAD/DEAH box helicase, N-terminal domain cont... 144 2e-34
Os08g0492100 Paraneoplastic encephalomyelitis antigen famil... 137 2e-32
Os02g0762800 DEAD/DEAH box helicase, N-terminal domain cont... 125 5e-29
AK120313 117 2e-26
Os08g0320100 RNA-binding region RNP-1 (RNA recognition moti... 115 6e-26
Os02g0221500 Paraneoplastic encephalomyelitis antigen famil... 114 1e-25
Os05g0247900 DEAD/DEAH box helicase, N-terminal domain cont... 111 1e-24
AK111184 109 4e-24
Os04g0692700 SNF2-related domain containing protein 109 4e-24
Os10g0457700 Zinc finger, FYVE/PHD-type domain containing p... 108 1e-23
Os05g0144300 DEAD/DEAH box helicase, N-terminal domain cont... 107 2e-23
Os01g0367900 Similar to Possible global transcription activ... 105 6e-23
Os06g0183800 Similar to Chromatin remodeling factor CHD3 (G... 104 1e-22
Os05g0150300 Similar to Possible global transcription activ... 102 7e-22
Os07g0497000 Similar to Mi-2 autoantigen-like protein (Heli... 99 5e-21
Os04g0566100 Similar to Transcriptional activator SRCAP 97 3e-20
Os10g0565700 SNF2-related domain containing protein 89 6e-18
Os06g0566100 RNA-binding region RNP-1 (RNA recognition moti... 86 5e-17
Os03g0101700 Similar to SNF2P 84 3e-16
AK110250 83 5e-16
Os01g0881000 Zinc finger, FYVE/PHD-type domain containing p... 79 6e-15
Os04g0177300 DEAD/DEAH box helicase, N-terminal domain cont... 75 8e-14
Os11g0637700 RNA-binding region RNP-1 (RNA recognition moti... 75 9e-14
>Os01g0636700 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 469
Score = 970 bits (2508), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 469/469 (100%), Positives = 469/469 (100%)
Query: 1 MVQIKELGEGSSHAGQVVIRGLPSELSYADLADYFIKYGKIVDLIIIRAKGTAQAGDSAK 60
MVQIKELGEGSSHAGQVVIRGLPSELSYADLADYFIKYGKIVDLIIIRAKGTAQAGDSAK
Sbjct: 1 MVQIKELGEGSSHAGQVVIRGLPSELSYADLADYFIKYGKIVDLIIIRAKGTAQAGDSAK 60
Query: 61 ITYADAAISDKIIKCRHIIKGKHVVVDRTLMEDTIQYKDKKTNRRITLDGLPWTVSNDDI 120
ITYADAAISDKIIKCRHIIKGKHVVVDRTLMEDTIQYKDKKTNRRITLDGLPWTVSNDDI
Sbjct: 61 ITYADAAISDKIIKCRHIIKGKHVVVDRTLMEDTIQYKDKKTNRRITLDGLPWTVSNDDI 120
Query: 121 VHFFSPYGTVVDHQITQKDENKLSEGSGFVLFSSELAVIKILSNGNTVNLGGEKVSINRS 180
VHFFSPYGTVVDHQITQKDENKLSEGSGFVLFSSELAVIKILSNGNTVNLGGEKVSINRS
Sbjct: 121 VHFFSPYGTVVDHQITQKDENKLSEGSGFVLFSSELAVIKILSNGNTVNLGGEKVSINRS 180
Query: 181 GAFVIAATGHHIKHPFLLPSEIFSSLFPHQKDGLEWLWRLHCEKSGGGILADDMGLGKTR 240
GAFVIAATGHHIKHPFLLPSEIFSSLFPHQKDGLEWLWRLHCEKSGGGILADDMGLGKTR
Sbjct: 181 GAFVIAATGHHIKHPFLLPSEIFSSLFPHQKDGLEWLWRLHCEKSGGGILADDMGLGKTR 240
Query: 241 QASAFLAGLFYSDLTQRVLIVAPGTILHQWIAELTKVGFNEDLIHSFWCAKTRHDSLAQV 300
QASAFLAGLFYSDLTQRVLIVAPGTILHQWIAELTKVGFNEDLIHSFWCAKTRHDSLAQV
Sbjct: 241 QASAFLAGLFYSDLTQRVLIVAPGTILHQWIAELTKVGFNEDLIHSFWCAKTRHDSLAQV 300
Query: 301 LKEGGVLLITYDLVRLYNEELNGMSSKSSKMRRACPSWDYVILDEGHVLKNPNTKNAAAL 360
LKEGGVLLITYDLVRLYNEELNGMSSKSSKMRRACPSWDYVILDEGHVLKNPNTKNAAAL
Sbjct: 301 LKEGGVLLITYDLVRLYNEELNGMSSKSSKMRRACPSWDYVILDEGHVLKNPNTKNAAAL 360
Query: 361 KSLSRGQTVVLTGTPVQNNLSEFHSLMSLCCPTVLGSLAAFERDFCKPIDMGNVLEATTE 420
KSLSRGQTVVLTGTPVQNNLSEFHSLMSLCCPTVLGSLAAFERDFCKPIDMGNVLEATTE
Sbjct: 361 KSLSRGQTVVLTGTPVQNNLSEFHSLMSLCCPTVLGSLAAFERDFCKPIDMGNVLEATTE 420
Query: 421 VVMISSKKAMEFRKMVRPYFLRRTKESIESLLPNKADLVIWLKLTPYQI 469
VVMISSKKAMEFRKMVRPYFLRRTKESIESLLPNKADLVIWLKLTPYQI
Sbjct: 421 VVMISSKKAMEFRKMVRPYFLRRTKESIESLLPNKADLVIWLKLTPYQI 469
>Os01g0102800 DEAD/DEAH box helicase, N-terminal domain containing protein
Length = 1187
Score = 170 bits (430), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 101/305 (33%), Positives = 152/305 (49%), Gaps = 47/305 (15%)
Query: 198 LPSEIFSSLFPHQKDGLEWLWRLHCEKSGGGILADDMGLGKTRQASAFLAGLFYSDLTQR 257
+P +++ LF +QK G++WLW LHC+++GG I+ D+MGLGKT Q +FL L S L +
Sbjct: 364 IPGTLYTQLFDYQKVGVQWLWELHCQRAGG-IIGDEMGLGKTVQVLSFLGSLHNSGLYKP 422
Query: 258 VLIVAPGTILHQWIAELTK------------------------------VGFNEDLIHSF 287
++V P T+L QW E ++ ++ D +
Sbjct: 423 SIVVCPVTLLQQWRREASRWYPKFKVEILHDSANSSSKKSKRSSDSDSEASWDSDQEEAV 482
Query: 288 WC---AKTRHDSLAQVLKEG-GVLLITYDLVRLYNEELNGMSSKSSKMRRACPSWDYVIL 343
C AK D +++V+ G G+LL TY+ +R+ E+L + W Y +L
Sbjct: 483 TCSKPAKKWDDLISRVVSSGSGLLLTTYEQLRILGEKLLDIE------------WGYAVL 530
Query: 344 DEGHVLKNPNTKNAAALKSLSRGQTVVLTGTPVQNNLSEFHSLMSLCCPTVLGSLAAFER 403
DEGH ++NPN + K L +++TG P+QN LSE SL P LG L FE
Sbjct: 531 DEGHRIRNPNAEITLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEA 590
Query: 404 DFCKPIDMGNVLEATTEVVMISSKKAMEFRKMVRPYFLRRTKESIESLLPNKADLVIWLK 463
+F PI +G AT V + + A+ R +V PY LRR K + + LP K + V++
Sbjct: 591 EFSVPITVGGYANATPLQVSTAYRCAVVLRDLVMPYLLRRMKADVNAQLPKKTEHVLFCS 650
Query: 464 LTPYQ 468
LT Q
Sbjct: 651 LTTEQ 655
>Os04g0692750 DEAD/DEAH box helicase, N-terminal domain containing protein
Length = 204
Score = 144 bits (363), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 90/249 (36%), Positives = 122/249 (48%), Gaps = 59/249 (23%)
Query: 230 LADDMGLGKTRQASAFLAGLFYSDLTQRVLIVAPGTILHQWIAELTKVGFNEDLI-HSFW 288
L DDMGLGKT Q SAFLAGLF+S L +RVL+VAP T+L W EL+ V + + +S
Sbjct: 1 LGDDMGLGKTMQVSAFLAGLFHSRLIKRVLVVAPKTLLTHWTKELSVVSLKDKIRDYSGP 60
Query: 289 CAKTRHDSLAQVLKEGGVLLITYDLVRLYNEELNGMSSKSSKMRRACPSWDYVILDEGHV 348
A R+ L KEGG+LL TYD+VR + + G + W+YVILDEGH+
Sbjct: 61 NANARNYELKYAFKEGGILLTTYDIVRNNFKMIKGNFTNDFDDEEET-LWNYVILDEGHI 119
Query: 349 LKNPNTKNAAALKSLSRGQTVVLTGTPVQNNLSEFHSLMSLCCPTVLGSLAAFERDFCKP 408
+KNP T+ A +L + +V++GTP+QNNL E
Sbjct: 120 IKNPKTQRAQSLFEIPCAHRIVISGTPIQNNLKE-------------------------- 153
Query: 409 IDMGNVLEATTEVVMISSKKAMEFRKMVRPYFLRRTKESI--------ESLLPNKADLVI 460
R+ ++PYFLRR K + + L K +L+I
Sbjct: 154 -----------------------LRERIKPYFLRRMKNEVFLDSGTGEDKKLAKKNELII 190
Query: 461 WLKLTPYQI 469
WLKLT Q+
Sbjct: 191 WLKLTSCQV 199
>Os08g0492100 Paraneoplastic encephalomyelitis antigen family protein
Length = 362
Score = 137 bits (345), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 68/165 (41%), Positives = 106/165 (64%), Gaps = 1/165 (0%)
Query: 16 QVVIRGLPSELSYADLADYFIKYGKIVDLIIIRAKGTAQAGDSAKITYADAAISDKIIKC 75
++ + GLP + + AD +F +YG+IVD +I+R K T+Q ITY++ A+ D+++
Sbjct: 24 KIFVGGLPRDTTEADFVKHFGQYGEIVDSVIMRDKHTSQPRGFGFITYSNPAVVDRVMDD 83
Query: 76 RHIIKGKHVVVDRTLMEDTIQYKDKKTNRRITLDGLPWTVSNDDIVHFFSPYGTVVDHQI 135
H GK V + RT+ +D++Q KD KT ++I + GLP ++ DD HFF YG VVDHQI
Sbjct: 84 IHEFNGKQVEIKRTIPKDSVQSKDFKT-KKIFVGGLPQALTEDDFKHFFQKYGPVVDHQI 142
Query: 136 TQKDENKLSEGSGFVLFSSELAVIKILSNGNTVNLGGEKVSINRS 180
+ + K S G GF++FSS+ V +L+NGN ++L G KV I ++
Sbjct: 143 MRDHQTKRSRGFGFIVFSSDQVVDDLLANGNMIDLAGAKVEIKKA 187
>Os02g0762800 DEAD/DEAH box helicase, N-terminal domain containing protein
Length = 879
Score = 125 bits (315), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 91/280 (32%), Positives = 141/280 (50%), Gaps = 30/280 (10%)
Query: 206 LFPHQKDGLEWLWR-----LHCEKSGGGILADDMGLGKTRQASAFL-----AGLFYSDLT 255
L PHQ++G+++++ L+ + G ILADDMGLGKT Q+ L G +
Sbjct: 235 LRPHQREGVQFMFDCVSGLLNDDGISGCILADDMGLGKTLQSITLLYTLLCQGFDAKPMV 294
Query: 256 QRVLIVAPGTILHQWIAELTK-VGFNEDLIHSFWCAKTRHDSLAQV------LKEGGVLL 308
+R ++V P +++ W +E+ K + L+ C TR D L+ + L VL+
Sbjct: 295 KRAVVVTPTSLVSNWESEIIKWLKGRVQLLA--LCESTRADVLSGIESFLKPLSRLQVLI 352
Query: 309 ITYDLVRLYNEELNGMSSKSSKMRRACPSWDYVILDEGHVLKNPNTKNAAALKSLSRGQT 368
++Y+ R++ SSK R S D +I DE H LKN T AL +L +
Sbjct: 353 VSYETFRMH----------SSKFERP-GSCDLLICDEAHRLKNDQTLTNKALAALPCKRR 401
Query: 369 VVLTGTPVQNNLSEFHSLMSLCCPTVLGSLAAFERDFCKPIDMGNVLEATTEVVMISSKK 428
++L+GTP+QN+L EF S+++ P VLG F R + PI G A+ E + S++
Sbjct: 402 ILLSGTPMQNDLEEFFSMVNFTNPGVLGDATYFRRYYEAPIICGREPTASAEEKNLGSER 461
Query: 429 AMEFRKMVRPYFLRRTKESIESLLPNKADLVIWLKLTPYQ 468
+ E V + LRRT + + LP K V+ KLT Q
Sbjct: 462 SAELSAKVNLFILRRTNALLSNHLPPKIVEVVCCKLTALQ 501
>AK120313
Length = 409
Score = 117 bits (293), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 58/171 (33%), Positives = 100/171 (58%)
Query: 10 GSSHAGQVVIRGLPSELSYADLADYFIKYGKIVDLIIIRAKGTAQAGDSAKITYADAAIS 69
G +G++ + G+ E + + +F KYG I D +I++ K T S +T++D ++
Sbjct: 73 GGDSSGKIFVGGVAWETTEESFSKHFEKYGAITDSVIMKDKHTKMPRGSGFVTFSDPSVI 132
Query: 70 DKIIKCRHIIKGKHVVVDRTLMEDTIQYKDKKTNRRITLDGLPWTVSNDDIVHFFSPYGT 129
DK+++ H+I G+ V V RT+ + + KD R+I + GLP +++ D++ FSPYG
Sbjct: 133 DKVLEDEHVIDGRTVEVKRTVPREEMSSKDGPKTRKIFVGGLPSSLTEDELREHFSPYGK 192
Query: 130 VVDHQITQKDENKLSEGSGFVLFSSELAVIKILSNGNTVNLGGEKVSINRS 180
+V+HQI S G GFV F SE +V +++S G +LGG++V I ++
Sbjct: 193 IVEHQIMLDHSTGRSRGFGFVTFESEDSVERVISEGRMRDLGGKQVEIKKA 243
>Os08g0320100 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 350
Score = 115 bits (288), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 63/173 (36%), Positives = 104/173 (60%), Gaps = 3/173 (1%)
Query: 9 EGSSHAGQVVIRGLPSELSYADLADYFIKYGKIVDLIIIRAKGTAQAGDSAKITYADAAI 68
+G+S A ++ I GLP + + +YF KYG+IVD +I++ + T + IT+AD A+
Sbjct: 10 DGASPA-KIFIGGLPKDTTMGTFKEYFGKYGEIVDAVIMKDRFTQKPRGFGFITFADPAV 68
Query: 69 SDKIIKCRHIIKGKHVVVDRTLMEDTIQYKDKKTNRRITLDGLPWTVSNDDIVHFFSPYG 128
D++I+ H+I GK V + RT+ + KD KT ++I + GLP + D+ FFS +G
Sbjct: 69 VDRVIEDNHVINGKEVEIKRTIPKGAAPLKDFKT-KKIFVGGLPSALKEDEFKEFFSKFG 127
Query: 129 TVVDHQITQKDENKLSEGSGFVLFSSELAVIKILS-NGNTVNLGGEKVSINRS 180
VV+H+I + S G GFV+F +E V ++L+ GN ++L G +V I ++
Sbjct: 128 KVVEHEIIRDHSTNRSRGFGFVVFDAEKTVDELLAKKGNMIDLNGSQVEIKKA 180
>Os02g0221500 Paraneoplastic encephalomyelitis antigen family protein
Length = 397
Score = 114 bits (286), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 57/171 (33%), Positives = 99/171 (57%)
Query: 10 GSSHAGQVVIRGLPSELSYADLADYFIKYGKIVDLIIIRAKGTAQAGDSAKITYADAAIS 69
G +G++ + G+ E + + +F KYG I D +I++ K T +T++D ++
Sbjct: 61 GGDSSGKIFVGGVAWETTEESFSKHFEKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVI 120
Query: 70 DKIIKCRHIIKGKHVVVDRTLMEDTIQYKDKKTNRRITLDGLPWTVSNDDIVHFFSPYGT 129
DK+++ H+I G+ V V RT+ + + KD R+I + GLP +++ D++ FSPYG
Sbjct: 121 DKVLEDEHVIDGRTVEVKRTVPREEMSSKDGPKTRKIFVGGLPSSLTEDELREHFSPYGK 180
Query: 130 VVDHQITQKDENKLSEGSGFVLFSSELAVIKILSNGNTVNLGGEKVSINRS 180
+V+HQI S G GFV F SE +V +++S G +LGG++V I ++
Sbjct: 181 IVEHQIMLDHSTGRSRGFGFVTFESEDSVERVISEGRMRDLGGKQVEIKKA 231
>Os05g0247900 DEAD/DEAH box helicase, N-terminal domain containing protein
Length = 856
Score = 111 bits (278), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 83/293 (28%), Positives = 135/293 (46%), Gaps = 47/293 (16%)
Query: 198 LPSEIFSSLFPHQKDGLEWLWRLHCEKSGGGILADDMGLGKTRQASAFLAGLFYSDLTQ- 256
+PS I L HQ+DG+ +L+ L+ + GG+L DDMGLGKT Q AFL+ + D
Sbjct: 124 VPSSINCRLLVHQRDGVRFLYNLY-RNNHGGVLGDDMGLGKTIQTIAFLSAVIGKDNDHG 182
Query: 257 ----------RVLIVAPGTILHQWIAELTK---------VGFNEDLIHSFWCAKTRHDSL 297
+LI+ P +++ W E + G N DL+ L
Sbjct: 183 DQLVEGRKIAPILILCPTSVIRNWENEFAEWARCSVAVYHGPNRDLV------------L 230
Query: 298 AQVLKEGGVLLIT-YDLVRLYNEELNGMSSKSSKMRRACPSWDYVILDEGHVLKNPNTKN 356
+V + ++IT +D R++ + L G+S WD V++DE H LKN +K
Sbjct: 231 QKVETQRLEIVITSFDTFRIHGKILCGIS------------WDLVVVDEAHRLKNEKSKL 278
Query: 357 AAALKSLSRGQTVVLTGTPVQNNLSEFHSLMSLCCPTVLGSLAAFERDFCKPIDMGNVLE 416
A ++ + LTGT +QN + E +L P LG F + +P+ G
Sbjct: 279 YTACLEITTRKRFGLTGTIMQNKIMELFNLFDWIVPGCLGDREHFRVYYDEPLKHGQRFS 338
Query: 417 ATTEVVMISSKKAMEFRKMVRPYFLRRTK-ESIESLLPNKADLVIWLKLTPYQ 468
A V ++ K+ ++ + LRRTK E+I L+ K D +++ +++ Q
Sbjct: 339 APERFVQVADKRKKHLVSVLSKFLLRRTKEETIGHLMLGKEDNIVFCRMSDVQ 391
>AK111184
Length = 1028
Score = 109 bits (273), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 90/323 (27%), Positives = 151/323 (46%), Gaps = 48/323 (14%)
Query: 178 NRSGAFVIAA--TGHHIKH-PFLLP-------SEIFSSLFPHQKDGLEWLWR----LHC- 222
N GA V+ GH +H P LP ++ +L PHQ +G+++L+ +H
Sbjct: 286 NEHGAIVMKRLDEGHQERHNPKGLPVVDVVLDPQLAKALRPHQIEGVKFLYERVMGMHAD 345
Query: 223 -EKSGGGILADDMGLGKTRQASAFLAGL-----FYSDLT---QRVLIVAPGTILHQWIAE 273
EK G ILAD MGLGKT Q A + L +Y+ + +R +IV P T++ W E
Sbjct: 346 GEKGQGAILADKMGLGKTLQTIALVLTLLKQSCYYTPASCTIERAIIVCPLTLVKNWKRE 405
Query: 274 LTK-VGFNEDLIHSFWCAKTRHDSLAQVLKEGG--VLLITYDLVR----LYNEELNGMSS 326
K +G + + + D +A+ ++ VL+I Y+ +R L+ + G+
Sbjct: 406 FKKWIGTSALNVLCIDEGRGCQD-VARFVRSKSYHVLVIGYEKLRTCKDLFKDAPVGL-- 462
Query: 327 KSSKMRRACPSWDYVILDEGHVLKNPNTKNAAALKSLSRGQTVVLTGTPVQNNLSEFHSL 386
++ DEGH LK+ K LS + ++L+GTP+QN+LSEF ++
Sbjct: 463 --------------IVCDEGHRLKSKEAKTTQMFDELSAERKIILSGTPIQNDLSEFFAM 508
Query: 387 MSLCCPTVLGSLAAFERDFCKPIDMGNVLEATTEVVMISSKKAMEFRKMVRPYFLRRTKE 446
+ P +L S A+F++ +PI + +A + LRRT +
Sbjct: 509 IDFVAPGMLNSYASFKKISEEPIMRSRAQHCSKHTKATGQARASALMTITNDIILRRTAD 568
Query: 447 SIESLLPNKADLVIWLKLTPYQI 469
+ + LP K ++V++ +P QI
Sbjct: 569 ILSNFLPPKKEMVLFCSPSPEQI 591
>Os04g0692700 SNF2-related domain containing protein
Length = 127
Score = 109 bits (273), Expect = 4e-24, Method: Composition-based stats.
Identities = 53/100 (53%), Positives = 66/100 (66%), Gaps = 1/100 (1%)
Query: 184 VIAATGHHIKHPFLLPSEIFSSLFPHQKDGLEWLWRLHCEKSGGGILADDMGLGKTRQAS 243
V+ A IK +P + SL+PHQ+DGL WLW LHC +GG ILADDMGLGKT Q S
Sbjct: 27 VVEAGVGAIKMKMKIPRRVLGSLYPHQRDGLAWLWALHCTATGG-ILADDMGLGKTIQVS 85
Query: 244 AFLAGLFYSDLTQRVLIVAPGTILHQWIAELTKVGFNEDL 283
A LAGLF+S+L +R LIVAP T L W+ L+ +G +
Sbjct: 86 ALLAGLFHSNLIKRALIVAPKTDLTHWVNHLSLLGLQHHI 125
>Os10g0457700 Zinc finger, FYVE/PHD-type domain containing protein
Length = 1319
Score = 108 bits (269), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 89/295 (30%), Positives = 139/295 (47%), Gaps = 24/295 (8%)
Query: 195 PFLLPSEIFSSLFPHQKDGLEWLWR-----LHCEKSG----GGILADDMGLGKTRQASAF 245
P +PS I + L PHQ G+ ++W + KSG G ILA +MGLGKT Q F
Sbjct: 704 PVRIPSSISAKLKPHQVSGIRFMWENVIQSVKKVKSGDKGFGCILAHNMGLGKTFQVITF 763
Query: 246 LAGLFYS-DLTQRV-LIVAPGTILHQWIAELTKVGFNEDL-IHSFWCAKTRHDSLAQVLK 302
L + L R LIV P +LH W E K E + + ++ +LK
Sbjct: 764 LYTVMRCIQLGLRTALIVTPVNVLHNWKKEFIKWCPAESKPLRVYMLEDVPRANIQYLLK 823
Query: 303 E----GGVLLITYDLVRLYNEELNGMSSKSSKMRRACPSW-----DYVILDEGHVLKNPN 353
+ GGVLLI Y R N L G S++ + + D ++ DE H++KN
Sbjct: 824 KWRIKGGVLLIGYSSFR--NLSL-GRSARDKTVANEITNALQCGPDILVCDEAHIIKNRR 880
Query: 354 TKNAAALKSLSRGQTVVLTGTPVQNNLSEFHSLMSLCCPTVLGSLAAFERDFCKPIDMGN 413
ALK + + + LTG+P+QNNL E++ ++ LGS F F PI+ G
Sbjct: 881 ADTTQALKQVRTQRRIALTGSPLQNNLMEYYCMVDFVREGYLGSSHEFRNRFQNPIENGQ 940
Query: 414 VLEATTEVVMISSKKAMEFRKMVRPYFLRRTKESIESLLPNKADLVIWLKLTPYQ 468
+T++ V I ++++ + ++ + R +++ LP K V+ +KL+ Q
Sbjct: 941 HTNSTSDDVKIMNQRSHILYEQLKGFVQRMDMNVVKNDLPEKKVFVVTVKLSQLQ 995
>Os05g0144300 DEAD/DEAH box helicase, N-terminal domain containing protein
Length = 1128
Score = 107 bits (267), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 88/285 (30%), Positives = 130/285 (45%), Gaps = 58/285 (20%)
Query: 206 LFPHQKDGLEWLWRLHCEKSGGGILADDMGLGKTRQASAFLAGLF-YSDLTQRVLIVAPG 264
L P+Q +GL+W+ L + GILAD+MGLGKT Q A +A L ++T LI+AP
Sbjct: 441 LRPYQLEGLQWMLSL-FNNNLNGILADEMGLGKTIQTIALIAYLLEKKEVTGPHLIIAPK 499
Query: 265 TILHQWIAELTKVGFNEDLIHSFWCAKTRHDSLAQVLKEG------------------GV 306
+L W E KT S+ +L +G V
Sbjct: 500 AVLPNWSNEF----------------KTWAPSIGTILYDGRPDDRKALREKNFGQRQFNV 543
Query: 307 LLITYDLVRLYNEELNGMSSKSSKMRRACPSWDYVILDEGHVLKNPNTKNAAALKSLSRG 366
LL YDL+ K K + W Y+I+DEGH LKN A L +SR
Sbjct: 544 LLTHYDLI-----------LKDLKFLKKV-HWHYLIVDEGHRLKNHECALARTL--VSRY 589
Query: 367 Q---TVVLTGTPVQNNLSEFHSLMSLCCPTVLGSLAAFERDFCKPIDMGNVLEATTEVVM 423
Q ++LTGTP+QN+L E SL++ P + S FE F P L ++++
Sbjct: 590 QIRRRLLLTGTPIQNSLQELWSLLNFILPNIFNSSQNFEEWFNAPFACEVSLNDEEQLLI 649
Query: 424 ISSKKAMEFRKMVRPYFLRRTKESIESLLPNKADLVIWLKLTPYQ 468
I +++RP+ LRR K+ +E LP K +++ ++ +Q
Sbjct: 650 IH-----RLHQVLRPFLLRRKKDEVEKYLPVKTQVILKCDMSAWQ 689
>Os01g0367900 Similar to Possible global transcription activator SNF2L1 (SWI/SNF
related matrix associated actin dependent regulator of
chromatin subfamily A member 1)
Length = 1107
Score = 105 bits (263), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 81/273 (29%), Positives = 133/273 (48%), Gaps = 28/273 (10%)
Query: 199 PSEIFSSLFPHQKDGLEWLWRLHCEKSGGGILADDMGLGKTRQASAFLAGLF-YSDLTQR 257
PS I + +Q GL WL RL+ E GILAD+MGLGKT Q + L L + +T
Sbjct: 224 PSCIKGKMRDYQLAGLNWLIRLY-ENGINGILADEMGLGKTLQTISLLGYLHEFRGITGP 282
Query: 258 VLIVAPGTILHQWIAELTKVGFNEDLIHSFWCAKTRHDSLAQVLKEG--GVLLITYDLVR 315
++VAP + L WI E+ + + + R+ +L+ G V + ++++
Sbjct: 283 HMVVAPKSTLGNWIKEIQRFCPILRAVKFLGNPEERNHIRENLLQPGKFDVCVTSFEMA- 341
Query: 316 LYNEELNGMSSKSSKMRRACPSWDYVILDEGHVLKNPNTKNAAALKSLSRGQTVVLTGTP 375
+ K++ R SW Y+I+DE H +KN N+ + ++ + +++TGTP
Sbjct: 342 --------IKEKTTLKR---FSWRYIIIDEAHRIKNENSLLSKTMRIYNTNYRLLITGTP 390
Query: 376 VQNNLSEFHSLMSLCCPTVLGSLAAFERDFCKPIDMGNVLEATTEVVMISSKKAMEFRKM 435
+QNNL E SL++ P + S F+ F I N EVV + K+
Sbjct: 391 LQNNLHELWSLLNFLLPEIFSSAETFDEWF--QISGEN---DQQEVV-------QQLHKV 438
Query: 436 VRPYFLRRTKESIESLLPNKADLVIWLKLTPYQ 468
+RP+ LRR K +E LP K + ++ + ++ Q
Sbjct: 439 LRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQ 471
>Os06g0183800 Similar to Chromatin remodeling factor CHD3 (GYMNOS/PICKLE)
Length = 1335
Score = 104 bits (260), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 85/290 (29%), Positives = 130/290 (44%), Gaps = 55/290 (18%)
Query: 205 SLFPHQKDGLEWLWRLHCEKSGGGILADDMGLGKTRQASAFLAGLFYSDLTQRVLIVAPG 264
+L P+Q +GL +L R + IL D+MGLGKT Q+ AFL LF L L+VAP
Sbjct: 260 TLHPYQLEGLNFL-RYSWYHNKRVILGDEMGLGKTIQSIAFLGSLFVDKLGPH-LVVAPL 317
Query: 265 TILHQWIAELTKVGFNEDLIHSFWCAKTR--------------------------HDSLA 298
+ L W E +++ F A +R ++
Sbjct: 318 STLRNWEREFATWAPQMNVVMYFGSAASREIIRKYEFYYPKEKPKKLKKKKSSPSNEDKK 377
Query: 299 QVLKEGGVLLITYDLVRLYNEELNGMSSKSSKMRRACPSWDYVILDEGHVLKNPNTKNAA 358
Q + VLL +Y+++ + + L + W+ +I+DEGH LKN ++K
Sbjct: 378 QSRIKFDVLLTSYEMINMDSTVLKTIE------------WECMIVDEGHRLKNKDSKLFG 425
Query: 359 ALKSLSRGQTVVLTGTPVQNNLSEFHSLMSLCCPTVLGSLAAFERDFCKPIDMGNVLEAT 418
LK V+LTGTPVQNNL E LM GS+A + +F K I+
Sbjct: 426 QLKEYHTKHRVLLTGTPVQNNLDELFMLMHFLEGDSFGSIADLQEEF-KDIN-------- 476
Query: 419 TEVVMISSKKAMEFRKMVRPYFLRRTKESIESLLPNKADLVIWLKLTPYQ 468
K+ + M++P+ LRR K+ + LP K +L++ ++LT Q
Sbjct: 477 ------QDKQVEKLHGMLKPHLLRRFKKDVMKELPPKKELILRVELTSKQ 520
>Os05g0150300 Similar to Possible global transcription activator SNF2L1 (SWI/SNF
related matrix associated actin dependent regulator of
chromatin subfamily A member 1)
Length = 1158
Score = 102 bits (254), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 81/273 (29%), Positives = 132/273 (48%), Gaps = 28/273 (10%)
Query: 199 PSEIFSSLFPHQKDGLEWLWRLHCEKSGGGILADDMGLGKTRQASAFLAGLF-YSDLTQR 257
PS I + +Q GL WL RL+ E GILAD+MGLGKT Q + L L + +T
Sbjct: 278 PSCIKGKMRDYQLAGLNWLIRLY-ENGINGILADEMGLGKTLQTISLLGYLHEFRGITGP 336
Query: 258 VLIVAPGTILHQWIAELTKVGFNEDLIHSFWCAKTRHDSLAQVLKEG--GVLLITYDLVR 315
++VAP + L W+ E+ + I + R+ +L G V + ++++
Sbjct: 337 HMVVAPKSTLGNWMKEIQRFCPVLRAIKFLGNPEERNHIRENLLVPGKFDVCVTSFEMA- 395
Query: 316 LYNEELNGMSSKSSKMRRACPSWDYVILDEGHVLKNPNTKNAAALKSLSRGQTVVLTGTP 375
+ K++ R SW Y+I+DE H +KN N+ + ++ + +++TGTP
Sbjct: 396 --------IKEKTALKR---FSWRYIIIDEAHRIKNENSLLSKTMRIYNTNYRLLITGTP 444
Query: 376 VQNNLSEFHSLMSLCCPTVLGSLAAFERDFCKPIDMGNVLEATTEVVMISSKKAMEFRKM 435
+QNNL E SL++ P + S F+ F I N EVV + K+
Sbjct: 445 LQNNLHELWSLLNFLLPEIFSSAETFDDWF--QISGEN---DQHEVV-------QQLHKV 492
Query: 436 VRPYFLRRTKESIESLLPNKADLVIWLKLTPYQ 468
+RP+ LRR K +E LP K + ++ + ++ Q
Sbjct: 493 LRPFLLRRLKSDVEKGLPPKKETILKVGMSEMQ 525
>Os07g0497000 Similar to Mi-2 autoantigen-like protein (Helicase-like protein)
Length = 622
Score = 99.4 bits (246), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 72/251 (28%), Positives = 121/251 (48%), Gaps = 42/251 (16%)
Query: 233 DMGLGKTRQASAFLAGLFYS-DLTQRVLIVAPGTILHQWIAELTKVGFNEDLIHSFWCAK 291
+MGLGKT A AFL+ L + L++ P + + W+AE + +++ A+
Sbjct: 1 EMGLGKTVSACAFLSSLCCEYKINLPCLVLVPLSTMPNWMAEFASWAPHLNVVEYHGSAR 60
Query: 292 TR--------HDSLAQVL------KEGGVLLITYDLVRLYNEELNGMSSKSSKMRRACPS 337
R H+ A + + VLL TY++V + L +S
Sbjct: 61 ARSIIRQYEWHEGDASQMGKIKKSHKFNVLLTTYEMVLVDAAYLRSVS------------ 108
Query: 338 WDYVILDEGHVLKNPNTKNAAALKSLSRGQTVVLTGTPVQNNLSEFHSLMSLCCPTVLGS 397
W+ +I+DEGH LKN ++K + L +LS V+LTGTP+QNN+ E ++L++ P S
Sbjct: 109 WEVLIVDEGHRLKNSSSKLFSLLNTLSFQHRVLLTGTPLQNNIGEMYNLLNFLQPASFPS 168
Query: 398 LAAFERDFCKPIDMGNVLEATTEVVMISSKKAMEFRKMVRPYFLRRTKESIESLLPNKAD 457
LA+FE F + +++K E + +V P+ LRR K+ +P K +
Sbjct: 169 LASFEEKFND---------------LTTTEKVEELKNLVAPHMLRRLKKDAMQNIPPKTE 213
Query: 458 LVIWLKLTPYQ 468
++ ++LT Q
Sbjct: 214 RMVPVELTSIQ 224
>Os04g0566100 Similar to Transcriptional activator SRCAP
Length = 914
Score = 97.1 bits (240), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 83/268 (30%), Positives = 127/268 (47%), Gaps = 38/268 (14%)
Query: 200 SEIFSSLFPHQKDGLEWLWRLHCEKSGGGILADDMGLGKTRQASAFLAGL--FYSDLTQR 257
SE L P+Q G+ +L LH + GG ILAD+MGLGKT QA +L L Y+D
Sbjct: 319 SEFEPILKPYQLVGVNFLLLLHRKNIGGAILADEMGLGKTVQAVTYLTLLRHLYNDPGPH 378
Query: 258 VLIVAPGTILHQWIAELTKVGFNEDLIHSFWCAKTRHDSLAQVLKEGG------VLLITY 311
LIV P ++L W EL K + +I +T + L + G VLL+ Y
Sbjct: 379 -LIVCPASVLENWERELKKWCPSFSIIMFHGAGRTAYSKELSSLGKAGYPPPFNVLLVCY 437
Query: 312 DLVRLYNEELNGMSSKSSKMRRACPSWDY--VILDEGHVLKNPNT---KNAAALKSLSRG 366
L S++ R+A W + V++DE HVLK+ + +N A+ +R
Sbjct: 438 SL-------FERRSAQQKDDRKALKRWRWSCVLMDEAHVLKDKGSFRWRNLMAVAQHAR- 489
Query: 367 QTVVLTGTPVQNNLSEFHSLMSLCCPTVLGSLAAFERDFCKPIDMGNVLEATTEVVMISS 426
Q ++LTGTP+QN+L E SL+ P + + ID+ +L A ++
Sbjct: 490 QRLMLTGTPLQNDLHELWSLLEFMMPDIFAT---------GDIDLKKLLNAEDHELI--- 537
Query: 427 KKAMEFRKMVRPYFLRRTKESI-ESLLP 453
+ ++ P+ LRR K + + L+P
Sbjct: 538 ---SRIKSILGPFILRRLKSDVMQQLVP 562
>Os10g0565700 SNF2-related domain containing protein
Length = 232
Score = 89.4 bits (220), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 73/123 (59%), Gaps = 3/123 (2%)
Query: 349 LKNPNTKNAAALKSLSRGQTVVLTGTPVQNNLSEFHSLMSLCCPTVLGSLAAFERDFCKP 408
+KN TK +L + +++TGT +QNNL+EF++LM+ CCP +LG F +F P
Sbjct: 1 MKNDRTKLFDSLCRIDCTHRILMTGTLIQNNLTEFYALMNFCCPNLLGESGQFHENFSMP 60
Query: 409 IDMGNVLEATTEVVMISSKKAMEFRKMVRPYFLRRTKESIE---SLLPNKADLVIWLKLT 465
I+ A+ +++ S + + +K+V P+ LRRTKE ++ S L K +L +WLK++
Sbjct: 61 IERARYRGASAQLIKESIEASERLKKLVSPFVLRRTKEMLKNSASKLGTKHELTVWLKIS 120
Query: 466 PYQ 468
Q
Sbjct: 121 AAQ 123
>Os06g0566100 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 285
Score = 86.3 bits (212), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 71/120 (59%)
Query: 61 ITYADAAISDKIIKCRHIIKGKHVVVDRTLMEDTIQYKDKKTNRRITLDGLPWTVSNDDI 120
+T++D ++ DK+++ H I G+ V V RT+ + + KD R+I + G+P +++ D +
Sbjct: 15 VTFSDPSVIDKVLQDEHTIDGRTVEVKRTVPREEMSSKDGPKTRKIFVGGIPPSLTEDKL 74
Query: 121 VHFFSPYGTVVDHQITQKDENKLSEGSGFVLFSSELAVIKILSNGNTVNLGGEKVSINRS 180
FS YG VV+HQI S G GFV F +E AV +++S G +L G++V I ++
Sbjct: 75 KEHFSSYGKVVEHQIMLDHGTGRSRGFGFVTFENEDAVERVMSEGRMHDLAGKQVEIKKA 134
>Os03g0101700 Similar to SNF2P
Length = 842
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 72/255 (28%), Positives = 117/255 (45%), Gaps = 37/255 (14%)
Query: 234 MGLGKTRQASAFLAGL-FYSDLTQRVLIVAPGTILHQWIAELTKVGFNEDLIHSFWCAKT 292
MGLGKT QA + L+ L +S L++ P ++ W++E K + +I
Sbjct: 17 MGLGKTLQAISLLSYLKIHSISPGPFLVLCPLSVTDGWLSEFNKFCPSLRVIQYVGDKLH 76
Query: 293 RHDSLAQVLKE--------------GGVLLITYDLVRLYNEELNGMSSKSSKMRRACPSW 338
R D + ++ V++ TYD+ + E L+ + W
Sbjct: 77 RRDLRRMMFQDVQKSSSSSHSTELPFDVMMTTYDIALMDQEFLSQIP------------W 124
Query: 339 DYVILDEGHVLKNPNTKNAAALKS-LSRGQTVVLTGTPVQNNLSEFHSLMSLCCPTVLGS 397
YV++DE LKNP++ L+ + ++LTGTP+QNNLSE +LM C P++ G+
Sbjct: 125 HYVVIDEAQRLKNPSSVLYNVLEQRFIMPRRLLLTGTPIQNNLSELWALMHFCMPSIFGT 184
Query: 398 LAAFERDFCKPIDMGNVLEATTEVVMISSKKAMEFRKMVRPYFLRRTKE-SIES---LLP 453
L F F + D E + K+ + ++R + LRRTK I+S LP
Sbjct: 185 LDQFLSTFKQSGDSLTGGETNK-----TDKQFKILKHVLRAFMLRRTKALLIQSGILALP 239
Query: 454 NKADLVIWLKLTPYQ 468
+ +L + + LTP Q
Sbjct: 240 SLTELTVMVPLTPLQ 254
>AK110250
Length = 1046
Score = 82.8 bits (203), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 97/195 (49%), Gaps = 13/195 (6%)
Query: 199 PSEIFSSLFPHQKDGLEWLWRLHCEKSGGGILADDMGLGKTRQASAFLAGLFYSDLTQRV 258
P+ + L P Q++GL W+ R GG+LAD+MG+GKT Q + L SD +
Sbjct: 424 PAGLNIKLLPFQREGLSWMTRQEQGTWKGGMLADEMGMGKTIQ----MISLMLSDRKKPC 479
Query: 259 LIVAPGTILHQWIAELTKVGFNEDLIHS-FWCAKTRHDSLAQVLKEGGVLLITYDLVR-L 316
L+VAP + QW E+ + + E + W R +L + LK V+L +Y ++
Sbjct: 480 LVVAPTVAIMQWRNEIEQ--YTEPKLKVLLWHGPNRTQNLKE-LKAVDVVLTSYAVLESS 536
Query: 317 YNEELNGMSSKSSKMRRACP----SWDYVILDEGHVLKNPNTKNAAALKSLSRGQTVVLT 372
+ ++ +G K+ ++ W +ILDE H +K +T A +L L+
Sbjct: 537 FRKQESGFRRKNEILKEKSALHAVHWRRIILDEAHNIKERSTNTAKGAFALQGDFRWCLS 596
Query: 373 GTPVQNNLSEFHSLM 387
GTP+QN + E +S++
Sbjct: 597 GTPLQNRVGELYSMI 611
>Os01g0881000 Zinc finger, FYVE/PHD-type domain containing protein
Length = 1150
Score = 79.3 bits (194), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 70/251 (27%), Positives = 108/251 (43%), Gaps = 30/251 (11%)
Query: 205 SLFPHQKDGLEWLWRLHCEKSGGGILADDMGLGKTRQASAFLAGLFYSDLTQR-VLIVAP 263
+L+ +Q GL+WL + + ILAD+MGLGKT Q FL + LT LI+AP
Sbjct: 533 ALYDYQLQGLQWLID-NFKTRRSVILADEMGLGKTVQVVCFLYHIIKESLTASPALILAP 591
Query: 264 GTILHQWIAELTKVGFNEDLI------HSFWCAKTRHDSLAQVLKEGGVLLITYDLVRLY 317
+IL QW E + + ++I S C + + L+ +Y+ V++
Sbjct: 592 KSILLQWEKEFCQWASDLNVIVYQGDRDSRKCIQVHEMYSSDGKPLFDALVTSYEFVQID 651
Query: 318 NEELNGMSSKSSKMRRACPSWDYVILDEGHVLKNPNTKNAAALKSLSRGQTVVLTGTPVQ 377
L W +++DE H +K + AA LK ++LTGTP+Q
Sbjct: 652 KAVLQKFK------------WSTIVIDEAHRMKKLDCNLAACLKRYCSEFRLLLTGTPLQ 699
Query: 378 NNLSEFHSLMSLCCPTVLGSLAAFERDFCKPIDMGNVLEATTEVVMISSKKAMEFRKMVR 437
NN+ E SL+ P A PI+ G L +V I + +++
Sbjct: 700 NNIMELFSLLHYIDPDEFSDPKA--DGLFSPIESGRDLTMDEKVARIHN--------ILK 749
Query: 438 PYFLRRTKESI 448
P LRR K +
Sbjct: 750 PRMLRRMKSDV 760
>Os04g0177300 DEAD/DEAH box helicase, N-terminal domain containing protein
Length = 664
Score = 75.5 bits (184), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 72/250 (28%), Positives = 107/250 (42%), Gaps = 41/250 (16%)
Query: 223 EKSGGGILADDMGLGKTRQASAFLAGLFYSDLTQR---------------------VLIV 261
+ + GGILAD MGLGKT A + +L Q LI+
Sbjct: 74 QSARGGILADAMGLGKTVMTIALILSNPRGELEQDKRGTRDRDTKAQTSRSSVRGGTLII 133
Query: 262 APGTILHQWIAELTKVGFNEDLIHSFWCAKTRHDSLAQVLKEGGVLLITYDLVRLYNEEL 321
P +L QW EL L + R L + + + V+L TY + L +
Sbjct: 134 CPMALLGQWKDELEAHSTPGALSVFVYYGGDRTTDL-RFMAQHSVVLTTYGV--LQSAHK 190
Query: 322 NGMSSKSSKMRRACPSWDYVILDEGHVLKNPNTKNAAALKSLSRGQTVVLTGTPVQNNLS 381
N SS ++ W V+LDE H +K+P TK A A L+ LTGTP+QNNL
Sbjct: 191 NDGSSIFHRI-----DWYRVVLDEAHTIKSPRTKAARAAYELTSHCRWCLTGTPLQNNLE 245
Query: 382 EFHSLMSLCCPTVLGSLAAFERDFCKPIDMGNVLEATTEVVMISSKKAMEFRKMVRPYFL 441
+ SL+ G + + + +P + G+ E ++V R ++RP L
Sbjct: 246 DLFSLLCFLHVEPWGDASWWNKLIQRPYENGD--ERGLKLV----------RAILRPLML 293
Query: 442 RRTKESIESL 451
RRTKE+ + +
Sbjct: 294 RRTKETKDKM 303
>Os11g0637700 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 467
Score = 75.5 bits (184), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 80/160 (50%), Gaps = 11/160 (6%)
Query: 14 AGQVVIRGLPSELSYADLADYFIKYGKIVDLIIIRAKGTAQAGDSAKITYADAAISDKII 73
AG++ I G+ + + L +YF KYG++V+ +I+R + T +A I +AD A+++++I
Sbjct: 5 AGKLFIGGISWDTNEDRLREYFDKYGEVVEAVIMRDRATGRARGFGFIVFADPAVAERVI 64
Query: 74 KCRHIIKGKHVVVDRTLMEDTIQYKDKKTN-----------RRITLDGLPWTVSNDDIVH 122
+H+I G+ V + + D K ++I + GL TV+ D
Sbjct: 65 MEKHMIDGRMVEAKKAVPRDDQHALSKSGGSAHGSPGPSRTKKIFVGGLASTVTEADFRK 124
Query: 123 FFSPYGTVVDHQITQKDENKLSEGSGFVLFSSELAVIKIL 162
+F +GT+ D + + G GF+ + SE AV K L
Sbjct: 125 YFEQFGTITDVVVMYDHNTQRPRGFGFITYDSEDAVDKAL 164
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.136 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 15,175,998
Number of extensions: 610513
Number of successful extensions: 1605
Number of sequences better than 1.0e-10: 27
Number of HSP's gapped: 1563
Number of HSP's successfully gapped: 28
Length of query: 469
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 365
Effective length of database: 11,605,545
Effective search space: 4236023925
Effective search space used: 4236023925
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 158 (65.5 bits)