Os04g0692700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : SNF2-related domain containing protein.
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Os04g0692700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : SNF2-related domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 55.29 | 0.349 | 7.18 | -1.09 | 0.305 | -0.902 | -1.24 | 0.456 | -0.273 | 22.2 | 23.7 | 6716 | -- | -- |
| 55.34 | 0.346 | 7.16 | -0.954 | 0.313 | -0.912 | -1.23 | -- | -0.249 | 22.2 | 23.37 | 6894 | -- | -- |
| 61.01 | 0.364 | 7.18 | -1.11 | 0.324 | -0.894 | -- | 0.636 | -0.293 | 23 | 23.72 | 6956 | -- | -- |
| 61.07 | 0.364 | 7.16 | -0.915 | 0.331 | -0.902 | -- | -- | -0.249 | 23.1 | 23.22 | 7012 | -- | -- |
| 67.25 | 0.382 | 7.17 | -1.08 | -- | -0.925 | -- | 0.555 | -0.29 | -- | 23.8 | 6684 | -- | -- |
| 83.7 | 0.429 | 7.08 | -0.463 | 0.362 | -- | -1.13 | -- | 0.126 | 22.6 | -- | -- | -- | -- |
| 88.54 | 0.441 | 7.07 | -0.421 | 0.372 | -- | -- | -- | 0.127 | 23.5 | -- | -- | -- | -- |
| 67.35 | 0.382 | 7.14 | -0.871 | -- | -0.926 | -- | -- | -0.182 | -- | 23.8 | 5247 | -- | -- |
| 74.71 | 0.403 | 7.08 | -- | 0.354 | -0.594 | -- | -- | 0.0867 | 23.5 | 28.8 | 5946 | -- | -- |
| 97.24 | 0.461 | 7.06 | -0.411 | -- | -- | -- | -- | 0.131 | -- | -- | -- | -- | -- |
| 93.22 | 0.452 | 7.06 | -- | 0.368 | -- | -- | -- | 0.174 | 23.4 | -- | -- | -- | -- |
| 82.34 | 0.423 | 7.08 | -- | -- | -0.628 | -- | -- | 0.0452 | -- | 28.76 | 6713 | -- | -- |
| 101.7 | 0.471 | 7.05 | -- | -- | -- | -- | -- | 0.177 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 51.67 | temperature | 30 | 720 | < th | dose dependent | rect. | 20 | 17 |
| 6 | 51.97 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 16 |
| 18 | 52.49 | temperature | 30 | 720 | < th | dose dependent | sin | 8 | NA |
| 25 | 52.83 | temperature | 10 | 720 | > th | dose dependent | sin | 9 | NA |
| 84 | 53.98 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 2 |
| 91 | 54.12 | temperature | 10 | 1440 | > th | dose dependent | rect. | 5 | 4 |
| 99 | 54.20 | temperature | 30 | 1440 | < th | dose dependent | rect. | 5 | 4 |
| 124 | 54.38 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 3 |
| 190 | 54.66 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 3 |
| 246 | 54.83 | temperature | 10 | 1440 | > th | dose dependent | rect. | 18 | 3 |
| 767 | 55.63 | temperature | 20 | 4320 | > th | dose dependent | rect. | 5 | 19 |
| 826 | 55.67 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 12 |
| 868 | 55.69 | temperature | 20 | 4320 | > th | dose dependent | no | NA | NA |
| 888 | 55.69 | temperature | 20 | 4320 | > th | dose dependent | rect. | 21 | 23 |