BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0692700 Os04g0692700|J100079H01
         (127 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os04g0692700  SNF2-related domain containing protein              214   1e-56
Os01g0636700  RNA-binding region RNP-1 (RNA recognition moti...   109   6e-25
Os04g0692750  DEAD/DEAH box helicase, N-terminal domain cont...    82   1e-16
Os01g0102800  DEAD/DEAH box helicase, N-terminal domain cont...    75   9e-15

>Os04g0692700 SNF2-related domain containing protein
          Length = 127

 Score =  214 bits (545), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 109/127 (85%), Positives = 109/127 (85%)

Query: 1   MAPTSQPQPQQXXXXXXXXXXXXXXXXXXAGVGAIKMKMKIPRRVLGSLYPHQRDGLAWL 60
           MAPTSQPQPQQ                  AGVGAIKMKMKIPRRVLGSLYPHQRDGLAWL
Sbjct: 1   MAPTSQPQPQQEVEVEVDEDEELVNMVVEAGVGAIKMKMKIPRRVLGSLYPHQRDGLAWL 60

Query: 61  WALHCTATGGILADDMGLGKTIQVSALLAGLFHSNLIKRALIVAPKTDLTHWVNHLSLLG 120
           WALHCTATGGILADDMGLGKTIQVSALLAGLFHSNLIKRALIVAPKTDLTHWVNHLSLLG
Sbjct: 61  WALHCTATGGILADDMGLGKTIQVSALLAGLFHSNLIKRALIVAPKTDLTHWVNHLSLLG 120

Query: 121 LQHHIRL 127
           LQHHIRL
Sbjct: 121 LQHHIRL 127



>Os01g0636700 RNA-binding region RNP-1 (RNA recognition motif) domain containing
           protein
          Length = 469

 Score =  109 bits (272), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 51/92 (55%), Positives = 63/92 (68%), Gaps = 1/92 (1%)

Query: 35  IKMKMKIPRRVLGSLYPHQRDGLAWLWALHCTATGG-ILADDMGLGKTIQVSALLAGLFH 93
           IK    +P  +  SL+PHQ+DGL WLW LHC  +GG ILADDMGLGKT Q SA LAGLF+
Sbjct: 192 IKHPFLLPSEIFSSLFPHQKDGLEWLWRLHCEKSGGGILADDMGLGKTRQASAFLAGLFY 251

Query: 94  SNLIKRALIVAPKTDLTHWVNHLSLLGLQHHI 125
           S+L +R LIVAP T L  W+  L+ +G    +
Sbjct: 252 SDLTQRVLIVAPGTILHQWIAELTKVGFNEDL 283



>Os04g0692750 DEAD/DEAH box helicase, N-terminal domain containing protein
          Length = 204

 Score = 82.0 bits (201), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 39/55 (70%), Positives = 44/55 (80%)

Query: 72  LADDMGLGKTIQVSALLAGLFHSNLIKRALIVAPKTDLTHWVNHLSLLGLQHHIR 126
           L DDMGLGKT+QVSA LAGLFHS LIKR L+VAPKT LTHW   LS++ L+  IR
Sbjct: 1   LGDDMGLGKTMQVSAFLAGLFHSRLIKRVLVVAPKTLLTHWTKELSVVSLKDKIR 55



>Os01g0102800 DEAD/DEAH box helicase, N-terminal domain containing protein
          Length = 1187

 Score = 75.5 bits (184), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 34/79 (43%), Positives = 49/79 (62%)

Query: 39  MKIPRRVLGSLYPHQRDGLAWLWALHCTATGGILADDMGLGKTIQVSALLAGLFHSNLIK 98
           ++IP  +   L+ +Q+ G+ WLW LHC   GGI+ D+MGLGKT+QV + L  L +S L K
Sbjct: 362 LRIPGTLYTQLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTVQVLSFLGSLHNSGLYK 421

Query: 99  RALIVAPKTDLTHWVNHLS 117
            +++V P T L  W    S
Sbjct: 422 PSIVVCPVTLLQQWRREAS 440



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.324    0.137    0.435 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,994,842
Number of extensions: 134688
Number of successful extensions: 375
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 376
Number of HSP's successfully gapped: 4
Length of query: 127
Length of database: 17,035,801
Length adjustment: 89
Effective length of query: 38
Effective length of database: 12,388,755
Effective search space: 470772690
Effective search space used: 470772690
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 150 (62.4 bits)