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Os01g0102800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : DEAD/DEAH box helicase, N-terminal domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.48 (0.0123) R2 : 0.000175
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0073 (0.0258) R2dN8 : 0.000226 R2N8 : 0.000175
σ : 0.231
deviance : 24.47
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
13.03 0.17 9.44 0.78 0.022 -0.207 -0.595 -1.44 0.0873 1.99 25.2 1140 -- --
15.16 0.181 9.47 0.521 0.0549 -0.148 -0.39 -- 0.0318 2.26 34.96 409 -- --
13.51 0.172 9.45 0.715 0.0786 -0.165 -- -1.16 0.074 0.306 25.3 1636 -- --
15.15 0.181 9.48 0.592 0.0291 0.389 -- -- 0.0371 0.156 14.65 2041 -- --
13.83 0.174 9.45 0.728 -- -0.105 -- -1.13 0.0858 -- 25.49 1667 -- --
15.46 0.184 9.47 0.549 0.0376 -- -0.399 -- 0.0518 2.13 -- -- -- --
16 0.187 9.47 0.561 0.0469 -- -- -- 0.0546 23.3 -- -- -- --
15.08 0.181 9.46 0.628 -- 0.57 -- -- 0.0723 -- 14.68 2008 -- --
21.95 0.218 9.5 -- 0.0604 -0.319 -- -- -0.0848 22 25.04 3271 -- --
16.14 0.188 9.47 0.562 -- -- -- -- 0.055 -- -- -- -- --
24.29 0.231 9.48 -- 0.0534 -- -- -- -0.00784 24 -- -- -- --
18.86 0.202 9.51 -- -- -0.381 -- -- -0.121 -- 37.24 47520 -- --
24.47 0.231 9.48 -- -- -- -- -- -0.0073 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 12.29 temperature 20 4320 > th dose independent rect. 20 2
3 12.30 temperature 20 4320 < th dose independent rect. 20 2
6 12.36 temperature 20 4320 > th dose independent rect. 18 4
7 12.36 temperature 20 4320 < th dose independent rect. 18 4
56 12.73 temperature 25 1440 < th dose dependent rect. 16 6
62 12.78 temperature 25 1440 < th dose dependent rect. 9 15
73 12.79 temperature 25 720 < th dose dependent rect. 6 20
75 12.80 temperature 25 1440 < th dose dependent rect. 17 2
100 12.85 temperature 20 1440 > th dose independent sin 19 NA
104 12.86 wind 7 14400 > th dose independent rect. 6 1
105 12.86 wind 7 14400 < th dose independent rect. 6 1
112 12.87 temperature 20 1440 > th dose independent rect. 9 15
116 12.87 temperature 25 1440 < th dose dependent sin 18 NA
132 12.89 temperature 25 1440 < th dose dependent rect. 21 1
164 12.91 humidity 80 1440 > th dose dependent rect. 2 15
165 12.92 temperature 20 1440 < th dose independent sin 19 NA
183 12.93 atmosphere 1005 14400 < th dose independent rect. 23 1
192 12.93 temperature 20 1440 < th dose independent rect. 9 16
222 12.95 temperature 20 1440 < th dose independent rect. 9 14
226 12.95 temperature 20 270 < th dose dependent sin 21 NA
269 12.98 atmosphere 1005 14400 > th dose independent rect. 4 1
282 12.98 temperature 20 720 < th dose independent rect. 6 17
285 12.98 wind 7 1440 > th dose dependent rect. 7 2
315 13.00 wind 7 1440 < th dose independent rect. 6 3
339 13.01 atmosphere 1005 14400 < th dose independent rect. 22 8
352 13.01 atmosphere 1005 14400 < th dose independent rect. 22 19
368 13.02 atmosphere 1005 14400 < th dose independent rect. 4 1
378 13.02 atmosphere 1005 14400 > th dose independent rect. 22 16
391 13.03 atmosphere 1005 14400 > th dose independent rect. 23 1
430 13.04 atmosphere 1005 14400 > th dose independent rect. 22 8
462 13.05 atmosphere 1005 14400 > th dose independent sin 5 NA
478 13.05 atmosphere 1005 14400 > th dose independent rect. 3 11
518 13.06 atmosphere 1005 14400 > th dose independent sin 7 NA
521 13.06 atmosphere 1005 14400 < th dose independent sin 11 NA
539 13.06 atmosphere 1005 14400 < th dose independent rect. 3 14
561 13.06 atmosphere 1005 14400 > th dose independent rect. 16 22
578 13.07 atmosphere 1005 14400 < th dose independent sin 7 NA
583 13.07 atmosphere 1005 14400 < th dose independent sin 4 NA
620 13.07 atmosphere 1005 14400 < th dose independent rect. 13 18
622 13.07 atmosphere 1005 14400 < th dose independent rect. 11 19
643 13.07 atmosphere 1005 14400 < th dose independent rect. 8 22
647 13.07 atmosphere 1005 14400 < th dose independent rect. 16 22
674 13.08 atmosphere 1005 14400 < th dose independent no NA NA
706 13.08 atmosphere 1005 14400 < th dose independent rect. 16 14
714 13.08 atmosphere 1005 14400 < th dose independent rect. 14 16
723 13.08 atmosphere 1005 14400 > th dose independent rect. 16 18
742 13.08 atmosphere 1005 14400 < th dose independent rect. 3 22
751 13.08 atmosphere 1005 14400 < th dose independent rect. 1 23
776 13.09 atmosphere 1005 14400 > th dose independent no NA NA
779 13.09 wind 7 1440 > th dose independent rect. 8 2
787 13.09 wind 7 1440 > th dose independent rect. 4 5
818 13.09 atmosphere 1005 14400 > th dose independent rect. 16 15
836 13.09 atmosphere 1005 14400 > th dose independent rect. 11 20
848 13.09 atmosphere 1005 14400 > th dose independent rect. 2 22
850 13.09 atmosphere 1005 14400 > th dose independent rect. 8 22
988 13.10 temperature 25 1440 < th dose dependent rect. 15 22