BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0692700 Os04g0692700|J100079H01
(127 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G63950.1 | chr5:25592160-25598405 REVERSE LENGTH=1091 122 5e-29
AT2G18760.1 | chr2:8129154-8133502 FORWARD LENGTH=1188 79 4e-16
AT5G19310.1 | chr5:6498906-6503432 FORWARD LENGTH=1065 63 3e-11
AT2G25170.1 | chr2:10714411-10723763 FORWARD LENGTH=1385 62 7e-11
AT3G06010.1 | chr3:1802435-1807284 REVERSE LENGTH=1103 61 1e-10
AT5G18620.2 | chr5:6196190-6202058 REVERSE LENGTH=1073 60 3e-10
AT3G06400.3 | chr3:1941066-1946700 FORWARD LENGTH=1058 59 5e-10
AT3G57300.2 | chr3:21199612-21207635 FORWARD LENGTH=1541 59 5e-10
AT5G66750.1 | chr5:26649050-26652869 FORWARD LENGTH=765 57 2e-09
AT4G31900.1 | chr4:15431528-15438443 FORWARD LENGTH=1203 57 2e-09
AT1G03750.1 | chr1:937920-941068 FORWARD LENGTH=863 56 4e-09
AT2G46020.2 | chr2:18923304-18931769 FORWARD LENGTH=2194 55 8e-09
AT3G19210.1 | chr3:6652799-6658876 REVERSE LENGTH=911 55 1e-08
AT5G44800.1 | chr5:18083659-18092162 REVERSE LENGTH=2224 55 1e-08
AT3G12810.1 | chr3:4065636-4073992 FORWARD LENGTH=2056 53 3e-08
AT2G28290.1 | chr2:12056771-12072950 FORWARD LENGTH=3575 53 5e-08
AT3G54280.2 | chr3:20092361-20104153 FORWARD LENGTH=2130 48 2e-06
AT1G50410.1 | chr1:18672828-18677365 FORWARD LENGTH=982 47 2e-06
AT1G02670.1 | chr1:576046-580299 FORWARD LENGTH=679 47 3e-06
>AT5G63950.1 | chr5:25592160-25598405 REVERSE LENGTH=1091
Length = 1090
Score = 122 bits (306), Expect = 5e-29, Method: Composition-based stats.
Identities = 52/93 (55%), Positives = 66/93 (70%)
Query: 34 AIKMKMKIPRRVLGSLYPHQRDGLAWLWALHCTATGGILADDMGLGKTIQVSALLAGLFH 93
+ + +P ++ LYPHQR+GL WLW+LH GGIL DDMGLGKT+Q+ + LAGLFH
Sbjct: 362 GLNLSYTLPGKIATMLYPHQREGLNWLWSLHTQGKGGILGDDMGLGKTMQICSFLAGLFH 421
Query: 94 SNLIKRALIVAPKTDLTHWVNHLSLLGLQHHIR 126
S LIKRAL+VAPKT L HW+ L+ +GL R
Sbjct: 422 SKLIKRALVVAPKTLLPHWMKELATVGLSQMTR 454
>AT2G18760.1 | chr2:8129154-8133502 FORWARD LENGTH=1188
Length = 1187
Score = 79.3 bits (194), Expect = 4e-16, Method: Composition-based stats.
Identities = 34/74 (45%), Positives = 46/74 (62%)
Query: 39 MKIPRRVLGSLYPHQRDGLAWLWALHCTATGGILADDMGLGKTIQVSALLAGLFHSNLIK 98
+ IP + L+ +QR G+ WLW LHC GGI+ D+MGLGKTIQV + L L S + K
Sbjct: 375 LNIPECIFRKLFDYQRVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGSLHFSKMYK 434
Query: 99 RALIVAPKTDLTHW 112
++I+ P T L W
Sbjct: 435 PSIIICPVTLLRQW 448
>AT5G19310.1 | chr5:6498906-6503432 FORWARD LENGTH=1065
Length = 1064
Score = 63.2 bits (152), Expect = 3e-11, Method: Composition-based stats.
Identities = 35/73 (47%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Query: 47 GSLYPHQRDGLAWLWALHCTATGGILADDMGLGKTIQVSALLAGLFHS-NLIKRALIVAP 105
G L +Q +GL W+ +L+ GILAD+MGLGKTIQ AL+A L S +L LI+AP
Sbjct: 384 GELRSYQLEGLQWMVSLYNNDYNGILADEMGLGKTIQTIALIAYLLESKDLHGPHLILAP 443
Query: 106 KTDLTHWVNHLSL 118
K L +W N +L
Sbjct: 444 KAVLPNWENEFAL 456
>AT2G25170.1 | chr2:10714411-10723763 FORWARD LENGTH=1385
Length = 1384
Score = 62.0 bits (149), Expect = 7e-11, Method: Composition-based stats.
Identities = 35/71 (49%), Positives = 45/71 (63%), Gaps = 1/71 (1%)
Query: 42 PRRVLGSLYPHQRDGLAWLWALHCTATGGILADDMGLGKTIQVSALLAGLFHSNLIKRAL 101
P + G L+P+Q +GL +L T ILAD+MGLGKTIQ ALLA LF NLI L
Sbjct: 266 PEFLKGLLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIALLASLFEENLIPH-L 324
Query: 102 IVAPKTDLTHW 112
++AP + L +W
Sbjct: 325 VIAPLSTLRNW 335
>AT3G06010.1 | chr3:1802435-1807284 REVERSE LENGTH=1103
Length = 1102
Score = 61.2 bits (147), Expect = 1e-10, Method: Composition-based stats.
Identities = 33/72 (45%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 47 GSLYPHQRDGLAWLWALHCTATGGILADDMGLGKTIQVSALLAGLFHSNLIKRA-LIVAP 105
G L +Q +GL W+ +L GILAD+MGLGKTIQ +L+A L + + LIVAP
Sbjct: 401 GELRSYQLEGLQWMVSLFNNNLNGILADEMGLGKTIQTISLIAYLLENKGVPGPYLIVAP 460
Query: 106 KTDLTHWVNHLS 117
K L +WVN +
Sbjct: 461 KAVLPNWVNEFA 472
>AT5G18620.2 | chr5:6196190-6202058 REVERSE LENGTH=1073
Length = 1072
Score = 60.1 bits (144), Expect = 3e-10, Method: Composition-based stats.
Identities = 35/87 (40%), Positives = 50/87 (57%), Gaps = 2/87 (2%)
Query: 31 GVGAIKMKMKIPRRVLGSLYPHQRDGLAWLWALHCTATGGILADDMGLGKTIQVSALLAG 90
G G ++ + P + G L +Q GL WL L+ GILAD+MGLGKT+Q +LLA
Sbjct: 177 GSGGTRL-LTQPACIQGKLRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLAY 235
Query: 91 LFHSNLIKRA-LIVAPKTDLTHWVNHL 116
L I ++VAPK+ L +W+N +
Sbjct: 236 LHEYRGINGPHMVVAPKSTLGNWMNEI 262
>AT3G06400.3 | chr3:1941066-1946700 FORWARD LENGTH=1058
Length = 1057
Score = 59.3 bits (142), Expect = 5e-10, Method: Composition-based stats.
Identities = 32/76 (42%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Query: 42 PRRVLGSLYPHQRDGLAWLWALHCTATGGILADDMGLGKTIQVSALLAGLFHSNLIKRA- 100
P + G + +Q GL WL L+ GILAD+MGLGKT+Q +LLA L I
Sbjct: 182 PSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLAYLHEYRGINGPH 241
Query: 101 LIVAPKTDLTHWVNHL 116
++VAPK+ L +W+N +
Sbjct: 242 MVVAPKSTLGNWMNEI 257
>AT3G57300.2 | chr3:21199612-21207635 FORWARD LENGTH=1541
Length = 1540
Score = 59.3 bits (142), Expect = 5e-10, Method: Composition-based stats.
Identities = 33/80 (41%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 39 MKIPRRVLGSLYPHQRDGLAWLWALHCTATGGILADDMGLGKTIQVSALLAGLFHS-NLI 97
++ P G+L +Q GL WL + GILAD+MGLGKTIQ A LA L N+
Sbjct: 576 VQTPELFKGTLKEYQMKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIW 635
Query: 98 KRALIVAPKTDLTHWVNHLS 117
L+VAP + L +W + +S
Sbjct: 636 GPFLVVAPASVLNNWADEIS 655
>AT5G66750.1 | chr5:26649050-26652869 FORWARD LENGTH=765
Length = 764
Score = 57.4 bits (137), Expect = 2e-09, Method: Composition-based stats.
Identities = 32/84 (38%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 35 IKMKMKI-PRRVLGSLYPHQRDGLAWLWALHCTATGGILADDMGLGKTIQVSALLAGLFH 93
IK++ ++ P G L +Q G+ WL +L GILAD MGLGKTIQ L+ L
Sbjct: 187 IKLQNELCPLLTGGQLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIGFLSHLKG 246
Query: 94 SNLIKRALIVAPKTDLTHWVNHLS 117
+ L L++AP + L++W N ++
Sbjct: 247 NGLDGPYLVIAPLSTLSNWFNEIA 270
>AT4G31900.1 | chr4:15431528-15438443 FORWARD LENGTH=1203
Length = 1202
Score = 57.0 bits (136), Expect = 2e-09, Method: Composition-based stats.
Identities = 32/71 (45%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 42 PRRVLGSLYPHQRDGLAWLWALHCTATGGILADDMGLGKTIQVSALLAGLFHSNLIKRAL 101
P + G+L+ +Q +GL +L T ILAD+MGLGKTIQ A LA LF NL L
Sbjct: 218 PEFLTGTLHTYQLEGLNFLRYSWSKKTNVILADEMGLGKTIQSIAFLASLFEENLSPH-L 276
Query: 102 IVAPKTDLTHW 112
+VAP + + +W
Sbjct: 277 VVAPLSTIRNW 287
>AT1G03750.1 | chr1:937920-941068 FORWARD LENGTH=863
Length = 862
Score = 56.2 bits (134), Expect = 4e-09, Method: Composition-based stats.
Identities = 33/99 (33%), Positives = 54/99 (54%), Gaps = 12/99 (12%)
Query: 30 AGVGAIKMKMKIPRRVLGSLYPHQRDGLAWLWALHCTATGGILADDMGLGKTIQVSALLA 89
+ +G I + + +P + L HQR+G+ +++ L+ GGIL DDMGLGKTIQ A LA
Sbjct: 121 SSIGEIPI-IHVPASINCRLLEHQREGVKFMYNLYKNNHGGILGDDMGLGKTIQTIAFLA 179
Query: 90 GLF-------HSNLIKR----ALIVAPKTDLTHWVNHLS 117
++ S L++ LI+ P + + +W + S
Sbjct: 180 AVYGKDGDAGESCLLESDKGPVLIICPSSIIHNWESEFS 218
>AT2G46020.2 | chr2:18923304-18931769 FORWARD LENGTH=2194
Length = 2193
Score = 55.1 bits (131), Expect = 8e-09, Method: Composition-based stats.
Identities = 31/81 (38%), Positives = 48/81 (59%), Gaps = 8/81 (9%)
Query: 47 GSLYPHQRDGLAWLWALHCTATGGILADDMGLGKTIQVSALLAGLF--------HSNLIK 98
G+L +Q GL W+ +L+ GILAD+MGLGKT+QV AL+A L H ++
Sbjct: 979 GTLRDYQLVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVP 1038
Query: 99 RALIVAPKTDLTHWVNHLSLL 119
A++V K++L W+ +S +
Sbjct: 1039 NAVLVNWKSELHTWLPSVSCI 1059
>AT3G19210.1 | chr3:6652799-6658876 REVERSE LENGTH=911
Length = 910
Score = 55.1 bits (131), Expect = 1e-08, Method: Composition-based stats.
Identities = 31/75 (41%), Positives = 47/75 (62%), Gaps = 11/75 (14%)
Query: 49 LYPHQRDGLAWLW----ALHCTAT--GGILADDMGLGKTIQVSALL-----AGLFHSNLI 97
L PHQR+G+ +++ LH +A G ILADDMGLGKT+Q LL G + ++
Sbjct: 180 LRPHQREGVQFMFDCVSGLHGSANINGCILADDMGLGKTLQSITLLYTLLCQGFDGTPMV 239
Query: 98 KRALIVAPKTDLTHW 112
K+A+IV P + +++W
Sbjct: 240 KKAIIVTPTSLVSNW 254
>AT5G44800.1 | chr5:18083659-18092162 REVERSE LENGTH=2224
Length = 2223
Score = 54.7 bits (130), Expect = 1e-08, Method: Composition-based stats.
Identities = 27/73 (36%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 47 GSLYPHQRDGLAWLWALHCTATGGILADDMGLGKTIQVSALLAGL-FHSNLIKRALIVAP 105
G+L+ HQ + L WL + ILAD+MGLGKT+ SA L+ L F + + L++ P
Sbjct: 687 GALFAHQLEALNWLRRCWHKSKNVILADEMGLGKTVSASAFLSSLYFEFGVARPCLVLVP 746
Query: 106 KTDLTHWVNHLSL 118
+ + +W++ SL
Sbjct: 747 LSTMPNWLSEFSL 759
>AT3G12810.1 | chr3:4065636-4073992 FORWARD LENGTH=2056
Length = 2055
Score = 53.1 bits (126), Expect = 3e-08, Method: Composition-based stats.
Identities = 32/78 (41%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 36 KMKMKIPRRVLGSLYPHQRDGLAWLWALHCTATGGILADDMGLGKTIQVSALLAGLF-HS 94
K++ K+P + SL +Q GL WL ++ GILAD+MGLGKTI ALLA L
Sbjct: 523 KVRTKLPFLLKHSLREYQHIGLDWLVTMYEKKLNGILADEMGLGKTIMTIALLAHLACDK 582
Query: 95 NLIKRALIVAPKTDLTHW 112
+ LIV P + + +W
Sbjct: 583 GIWGPHLIVVPTSVMLNW 600
>AT2G28290.1 | chr2:12056771-12072950 FORWARD LENGTH=3575
Length = 3574
Score = 52.8 bits (125), Expect = 5e-08, Method: Composition-based stats.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 45 VLGSLYPHQRDGLAWLWALHCTATGGILADDMGLGKTIQVSALLAGLFHS-NLIKRALIV 103
V G L +Q +GL WL +L+ GILAD+MGLGKT+QV +L+ L + N L+V
Sbjct: 750 VGGKLREYQMNGLRWLVSLYNNHLNGILADEMGLGKTVQVISLICYLMETKNDRGPFLVV 809
Query: 104 APKTDLTHWVNHLSL 118
P + L W + ++
Sbjct: 810 VPSSVLPGWQSEINF 824
>AT3G54280.2 | chr3:20092361-20104153 FORWARD LENGTH=2130
Length = 2129
Score = 47.8 bits (112), Expect = 2e-06, Method: Composition-based stats.
Identities = 29/75 (38%), Positives = 41/75 (54%), Gaps = 15/75 (20%)
Query: 49 LYPHQRDGLAWLWALHCTATGGILADDMGLGKTIQVSALLAGLFHSNLIKR--------- 99
L +Q++G+ WL L GIL DDMGLGKT+Q SA++A S+ +R
Sbjct: 1482 LRRYQQEGINWLGFLKRFKLHGILCDDMGLGKTLQASAIVA----SDAAERRGSTDELDV 1537
Query: 100 --ALIVAPKTDLTHW 112
++IV P T + HW
Sbjct: 1538 FPSIIVCPSTLVGHW 1552
>AT1G50410.1 | chr1:18672828-18677365 FORWARD LENGTH=982
Length = 981
Score = 47.4 bits (111), Expect = 2e-06, Method: Composition-based stats.
Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 8/69 (11%)
Query: 36 KMKMKIPRRVLG-SLYPHQRDGLAWLW-----ALHCTATGGILADDMGLGKTIQVSALLA 89
K ++ +P +L L HQ+ LAW++ +LHC GGILADD GLGKT+ AL+
Sbjct: 212 KSEVDLPAGLLSVPLMKHQKIALAWMFQKETNSLHCM--GGILADDQGLGKTVSTIALIL 269
Query: 90 GLFHSNLIK 98
H +K
Sbjct: 270 KQMHEAKLK 278
>AT1G02670.1 | chr1:576046-580299 FORWARD LENGTH=679
Length = 678
Score = 46.6 bits (109), Expect = 3e-06, Method: Composition-based stats.
Identities = 31/97 (31%), Positives = 49/97 (50%), Gaps = 14/97 (14%)
Query: 42 PRRVLGSLYPHQRDGLAWLWALHCTAT-GGILADDMGLGKTIQVSALLAGLFHSNLIK-- 98
P ++ L +Q++ LAW +A GGILAD+MG+GKTIQ +L+ + K
Sbjct: 127 PLDLIIPLLKYQKEFLAWATIQELSAVRGGILADEMGMGKTIQAISLVLARREVDRAKSR 186
Query: 99 ----RALIVAPKTDLTHWVNHLSLLG-------LQHH 124
L++ P L+ W++ +S L LQ+H
Sbjct: 187 EAVGHTLVLVPPVALSQWLDEISRLTSPGSTRVLQYH 223
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.324 0.137 0.435
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,367,009
Number of extensions: 75775
Number of successful extensions: 236
Number of sequences better than 1.0e-05: 19
Number of HSP's gapped: 237
Number of HSP's successfully gapped: 19
Length of query: 127
Length of database: 11,106,569
Length adjustment: 87
Effective length of query: 40
Effective length of database: 8,721,377
Effective search space: 348855080
Effective search space used: 348855080
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 105 (45.1 bits)