Os04g0566100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Transcriptional activator SRCAP.
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Os04g0566100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Transcriptional activator SRCAP.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 27.82 | 0.248 | 8.61 | 0.887 | 0.0879 | -1.23 | -0.116 | 1.29 | 0.345 | 22.9 | 16.49 | 585 | -- | -- |
| 28.97 | 0.251 | 8.64 | 0.664 | 0.0953 | -1.3 | 0.061 | -- | 0.284 | 22.6 | 14.9 | 586 | -- | -- |
| 27.86 | 0.246 | 8.61 | 0.875 | 0.0832 | -1.23 | -- | 1.22 | 0.341 | 22.7 | 16.38 | 573 | -- | -- |
| 28.97 | 0.251 | 8.64 | 0.653 | 0.0897 | -1.27 | -- | -- | 0.276 | 23.2 | 14.9 | 589 | -- | -- |
| 28.15 | 0.247 | 8.61 | 0.874 | -- | -1.2 | -- | 1.29 | 0.338 | -- | 16.4 | 527 | -- | -- |
| 48.74 | 0.327 | 8.67 | 0.346 | 0.299 | -- | 0.05 | -- | 0.0834 | 6.44 | -- | -- | -- | -- |
| 48.75 | 0.327 | 8.67 | 0.347 | 0.299 | -- | -- | -- | 0.0832 | 6.44 | -- | -- | -- | -- |
| 29.28 | 0.252 | 8.64 | 0.639 | -- | -1.24 | -- | -- | 0.271 | -- | 14.84 | 541 | -- | -- |
| 38.93 | 0.291 | 8.66 | -- | 0.0297 | -0.935 | -- | -- | 0.177 | 23.3 | 16.86 | 520 | -- | -- |
| 53.4 | 0.341 | 8.68 | 0.355 | -- | -- | -- | -- | 0.0895 | -- | -- | -- | -- | -- |
| 51.92 | 0.337 | 8.68 | -- | 0.304 | -- | -- | -- | 0.0445 | 6.37 | -- | -- | -- | -- |
| 38.95 | 0.291 | 8.66 | -- | -- | -0.933 | -- | -- | 0.173 | -- | 16.79 | 485 | -- | -- |
| 56.72 | 0.352 | 8.69 | -- | -- | -- | -- | -- | 0.0501 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 26.54 | temperature | 15 | 720 | > th | dose dependent | rect. | 21 | 18 |
| 6 | 26.83 | temperature | 15 | 720 | > th | dose dependent | rect. | 21 | 21 |
| 13 | 26.93 | temperature | 20 | 720 | > th | dose dependent | sin | 7 | NA |
| 49 | 27.41 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 59 | 27.57 | temperature | 15 | 720 | > th | dose dependent | rect. | 17 | 22 |
| 84 | 27.74 | temperature | 30 | 720 | < th | dose dependent | rect. | 18 | 19 |
| 122 | 27.94 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 23 |
| 128 | 27.97 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 21 |
| 146 | 28.06 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 17 |
| 157 | 28.11 | temperature | 15 | 720 | > th | dose dependent | rect. | 14 | 23 |
| 171 | 28.20 | temperature | 15 | 720 | > th | dose dependent | no | NA | NA |
| 182 | 28.24 | temperature | 10 | 720 | > th | dose dependent | rect. | 10 | 23 |
| 298 | 28.64 | temperature | 30 | 720 | < th | dose dependent | sin | 8 | NA |
| 301 | 28.65 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 309 | 28.67 | temperature | 15 | 720 | > th | dose dependent | rect. | 6 | 23 |
| 341 | 28.78 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 4 |
| 369 | 28.88 | temperature | 20 | 1440 | > th | dose dependent | rect. | 12 | 16 |
| 378 | 28.90 | temperature | 20 | 1440 | > th | dose dependent | sin | 16 | NA |
| 392 | 28.92 | temperature | 30 | 720 | < th | dose dependent | no | NA | NA |
| 424 | 28.97 | temperature | 15 | 720 | > th | dose dependent | rect. | 8 | 23 |
| 542 | 29.23 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 2 |
| 570 | 29.25 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 23 |
| 640 | 29.31 | temperature | 30 | 720 | < th | dose dependent | rect. | 9 | 23 |
| 691 | 29.35 | temperature | 30 | 1440 | < th | dose dependent | rect. | 15 | 11 |
| 748 | 29.39 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 4 |
| 756 | 29.39 | temperature | 30 | 720 | < th | dose dependent | rect. | 4 | 23 |
| 822 | 29.44 | temperature | 30 | 1440 | < th | dose dependent | sin | 15 | NA |