Os01g0367900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Possible global transcription activator SNF2L1 (SWI/SNF related matrix associated actin dependent regulator of chromatin subfamily A member 1).
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Os01g0367900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Possible global transcription activator SNF2L1 (SWI/SNF related matrix associated actin dependent regulator of chromatin subfamily A member 1).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 21.18 | 0.216 | 11.5 | 0.906 | 0.262 | -0.722 | 0.226 | 0.639 | 0.128 | 10.6 | 22.12 | 1513 | -- | -- |
| 22.08 | 0.219 | 11.5 | 0.7 | 0.262 | -0.739 | 0.233 | -- | 0.0761 | 10.6 | 22.1 | 1490 | -- | -- |
| 21.39 | 0.215 | 11.5 | 0.914 | 0.261 | -0.721 | -- | 0.634 | 0.128 | 10.6 | 22.16 | 1510 | -- | -- |
| 22.28 | 0.22 | 11.5 | 0.713 | 0.26 | -0.739 | -- | -- | 0.0768 | 10.6 | 22.08 | 1471 | -- | -- |
| 24.83 | 0.232 | 11.5 | 0.864 | -- | -0.707 | -- | 0.564 | 0.13 | -- | 22.2 | 1160 | -- | -- |
| 41.38 | 0.302 | 11.5 | 0.431 | 0.272 | -- | 0.182 | -- | -0.163 | 10.9 | -- | -- | -- | -- |
| 41.52 | 0.302 | 11.5 | 0.439 | 0.271 | -- | -- | -- | -0.162 | 10.9 | -- | -- | -- | -- |
| 25.37 | 0.235 | 11.5 | 0.705 | -- | -0.69 | -- | -- | 0.0761 | -- | 22.3 | 1051 | -- | -- |
| 33.93 | 0.271 | 11.5 | -- | 0.245 | -0.544 | -- | -- | -0.0183 | 10.7 | 22.4 | 1368 | -- | -- |
| 46.08 | 0.317 | 11.5 | 0.433 | -- | -- | -- | -- | -0.164 | -- | -- | -- | -- | -- |
| 46.59 | 0.319 | 11.5 | -- | 0.267 | -- | -- | -- | -0.211 | 10.8 | -- | -- | -- | -- |
| 36.17 | 0.28 | 11.5 | -- | -- | -0.553 | -- | -- | -0.0406 | -- | 22.34 | 979 | -- | -- |
| 51.01 | 0.333 | 11.5 | -- | -- | -- | -- | -- | -0.212 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 21.63 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 9 |
| 18 | 21.77 | temperature | 15 | 1440 | > th | dose dependent | rect. | 21 | 8 |
| 21 | 21.79 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 26 | 21.82 | temperature | 15 | 1440 | > th | dose dependent | rect. | 23 | 6 |
| 43 | 21.87 | temperature | 25 | 1440 | < th | dose dependent | sin | 12 | NA |
| 51 | 21.88 | temperature | 30 | 1440 | < th | dose dependent | rect. | 23 | 6 |
| 419 | 22.63 | temperature | 15 | 1440 | > th | dose dependent | sin | 11 | NA |
| 558 | 22.95 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 610 | 23.06 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 23 |
| 611 | 23.06 | temperature | 25 | 1440 | < th | dose dependent | rect. | 23 | 23 |
| 624 | 23.08 | temperature | 25 | 1440 | < th | dose dependent | rect. | 4 | 23 |
| 644 | 23.13 | temperature | 30 | 270 | < th | dose dependent | rect. | 10 | 23 |
| 867 | 23.60 | temperature | 20 | 1440 | < th | dose independent | rect. | 4 | 3 |
| 925 | 23.70 | temperature | 20 | 1440 | > th | dose independent | rect. | 4 | 3 |
| 972 | 23.77 | temperature | 15 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 988 | 23.79 | temperature | 15 | 270 | > th | dose dependent | rect. | 4 | 23 |