Os07g0497000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Mi-2 autoantigen-like protein (Helicase-like protein).
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Os07g0497000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Mi-2 autoantigen-like protein (Helicase-like protein).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 22.97 | 0.225 | 11.3 | 1.03 | 0.324 | 0.247 | -0.374 | 1.52 | 0.294 | 6.52 | 21 | 1646 | -- | -- |
| 27.27 | 0.243 | 11.3 | 0.666 | 0.327 | 0.182 | -0.389 | -- | 0.203 | 6.63 | 24.8 | 3408 | -- | -- |
| 22.93 | 0.223 | 11.3 | 1.12 | 0.319 | 0.188 | -- | 1.54 | 0.314 | 6.62 | 21.7 | 1945 | -- | -- |
| 27.44 | 0.244 | 11.3 | 0.684 | 0.329 | 0.188 | -- | -- | 0.274 | 6.7 | 31.6 | 2196 | -- | -- |
| 28.24 | 0.247 | 11.3 | 1.16 | -- | 0.151 | -- | 1.54 | 0.326 | -- | 21.81 | 1687 | -- | -- |
| 28.07 | 0.248 | 11.3 | 0.735 | 0.318 | -- | -0.421 | -- | 0.244 | 6.51 | -- | -- | -- | -- |
| 28.51 | 0.25 | 11.3 | 0.729 | 0.316 | -- | -- | -- | 0.245 | 6.59 | -- | -- | -- | -- |
| 32.31 | 0.265 | 11.3 | 0.687 | -- | 0.21 | -- | -- | 0.285 | -- | 31.9 | 4153 | -- | -- |
| 28.84 | 0.25 | 11.4 | -- | 0.329 | 0.562 | -- | -- | -0.0606 | 6.95 | 28.3 | 47520 | -- | -- |
| 33.73 | 0.271 | 11.3 | 0.737 | -- | -- | -- | -- | 0.252 | -- | -- | -- | -- | -- |
| 42.53 | 0.305 | 11.4 | -- | 0.326 | -- | -- | -- | 0.164 | 6.46 | -- | -- | -- | -- |
| 33.32 | 0.269 | 11.4 | -- | -- | 0.558 | -- | -- | -0.0504 | -- | 26.25 | 47520 | -- | -- |
| 48.05 | 0.324 | 11.4 | -- | -- | -- | -- | -- | 0.17 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 22.85 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 2 | 22.86 | temperature | 20 | 1440 | > th | dose dependent | rect. | 16 | 13 |
| 10 | 22.91 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 17 | 22.94 | temperature | 20 | 1440 | > th | dose dependent | sin | 13 | NA |
| 49 | 23.04 | wind | 3 | 43200 | < th | dose dependent | rect. | 23 | 2 |
| 106 | 23.18 | wind | 1 | 14400 | > th | dose independent | rect. | 11 | 1 |
| 120 | 23.20 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 9 |
| 180 | 23.26 | temperature | 20 | 1440 | > th | dose dependent | rect. | 23 | 2 |
| 314 | 23.33 | radiation | 1 | 4320 | > th | dose independent | rect. | 17 | 2 |
| 327 | 23.33 | temperature | 30 | 1440 | < th | dose dependent | rect. | 23 | 2 |
| 328 | 23.33 | wind | 3 | 14400 | < th | dose dependent | rect. | 20 | 3 |
| 358 | 23.35 | wind | 3 | 14400 | < th | dose dependent | rect. | 11 | 1 |
| 382 | 23.36 | temperature | 30 | 1440 | < th | dose dependent | sin | 13 | NA |
| 480 | 23.40 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 3 |
| 503 | 23.41 | wind | 1 | 43200 | < th | dose independent | rect. | 19 | 3 |
| 592 | 23.45 | wind | 1 | 14400 | < th | dose independent | rect. | 20 | 5 |
| 621 | 23.46 | wind | 1 | 14400 | < th | dose independent | rect. | 11 | 1 |
| 645 | 23.47 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 3 |
| 674 | 23.48 | wind | 3 | 43200 | < th | dose dependent | rect. | 20 | 5 |
| 717 | 23.50 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 771 | 23.52 | radiation | 1 | 4320 | < th | dose independent | rect. | 17 | 2 |
| 831 | 23.54 | wind | 1 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 857 | 23.55 | wind | 1 | 43200 | < th | dose independent | rect. | 16 | 10 |
| 875 | 23.55 | temperature | 20 | 1440 | > th | dose dependent | rect. | 22 | 23 |
| 908 | 23.56 | temperature | 20 | 1440 | > th | dose dependent | rect. | 1 | 23 |
| 953 | 23.58 | radiation | 1 | 4320 | < th | dose dependent | rect. | 17 | 1 |