Os05g0150300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Possible global transcription activator SNF2L1 (SWI/SNF related matrix associated actin dependent regulator of chromatin subfamily A member 1).
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Os05g0150300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Possible global transcription activator SNF2L1 (SWI/SNF related matrix associated actin dependent regulator of chromatin subfamily A member 1).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 131.39 | 0.539 | 10.7 | 0.125 | 0.35 | 0.817 | -0.0442 | 0.776 | -0.261 | 12.6 | 70.24 | 7561 | -- | -- |
| 132.35 | 0.536 | 10.7 | 0.086 | 0.36 | 0.837 | -0.0551 | -- | -0.269 | 12.5 | 70.17 | 7712 | -- | -- |
| 131.26 | 0.534 | 10.7 | 0.146 | 0.366 | 0.812 | -- | 0.772 | -0.277 | 12.4 | 72 | 7745 | -- | -- |
| 132.11 | 0.535 | 10.7 | 0.0641 | 0.363 | 0.865 | -- | -- | -0.32 | 12.2 | 72.02 | 7740 | -- | -- |
| 138.75 | 0.549 | 10.7 | 0.121 | -- | 0.837 | -- | 0.685 | -0.277 | -- | 71.86 | 7495 | -- | -- |
| 145.31 | 0.565 | 10.6 | -0.0297 | 0.36 | -- | -0.108 | -- | -0.102 | 13.2 | -- | -- | -- | -- |
| 145.35 | 0.565 | 10.6 | -0.0334 | 0.36 | -- | -- | -- | -0.102 | 13.2 | -- | -- | -- | -- |
| 139.24 | 0.55 | 10.7 | 0.0497 | -- | 0.909 | -- | -- | -0.319 | -- | 73 | 7481 | -- | -- |
| 132.21 | 0.536 | 10.7 | -- | 0.36 | 0.857 | -- | -- | -0.323 | 12.2 | 72.02 | 7740 | -- | -- |
| 153.37 | 0.579 | 10.6 | -0.0473 | -- | -- | -- | -- | -0.109 | -- | -- | -- | -- | -- |
| 145.38 | 0.564 | 10.6 | -- | 0.361 | -- | -- | -- | -0.0984 | 13.2 | -- | -- | -- | -- |
| 139.3 | 0.55 | 10.7 | -- | -- | 0.903 | -- | -- | -0.328 | -- | 73 | 7481 | -- | -- |
| 153.43 | 0.578 | 10.6 | -- | -- | -- | -- | -- | -0.104 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 130.86 | humidity | 60.0 | 4320 | > th | dose independent | rect. | 11 | 3 |
| 2 | 130.99 | humidity | 60.0 | 4320 | < th | dose independent | rect. | 13 | 1 |
| 12 | 131.71 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 18 | 14 |
| 23 | 132.26 | humidity | 80.0 | 4320 | < th | dose independent | rect. | 19 | 1 |
| 25 | 132.37 | humidity | 80.0 | 4320 | < th | dose dependent | rect. | 15 | 10 |
| 30 | 132.49 | humidity | 80.0 | 4320 | < th | dose dependent | sin | 14 | NA |
| 32 | 132.50 | humidity | 80.0 | 4320 | < th | dose dependent | rect. | 15 | 15 |
| 38 | 132.56 | humidity | 80.0 | 4320 | < th | dose dependent | rect. | 17 | 8 |
| 43 | 132.62 | humidity | 80.0 | 4320 | < th | dose dependent | rect. | 18 | 5 |
| 76 | 132.87 | humidity | 80.0 | 4320 | < th | dose dependent | rect. | 11 | 15 |
| 78 | 132.87 | humidity | 80.0 | 4320 | < th | dose dependent | rect. | 11 | 20 |
| 79 | 132.88 | humidity | 60.0 | 4320 | > th | dose independent | rect. | 11 | 17 |
| 87 | 132.89 | humidity | 60.0 | 4320 | > th | dose independent | rect. | 11 | 8 |
| 105 | 132.90 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 4 | 14 |
| 106 | 132.90 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 4 | 14 |
| 108 | 132.91 | humidity | 80.0 | 4320 | < th | dose independent | rect. | 18 | 4 |
| 134 | 132.98 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 4 | 14 |
| 160 | 133.04 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 16 | 18 |
| 172 | 133.10 | humidity | 60.0 | 4320 | > th | dose independent | rect. | 3 | 12 |
| 173 | 133.10 | humidity | 60.0 | 4320 | > th | dose independent | rect. | 1 | 14 |
| 197 | 133.13 | humidity | 70.0 | 4320 | < th | dose independent | rect. | 16 | 1 |
| 204 | 133.14 | humidity | 50.0 | 4320 | > th | dose dependent | rect. | 9 | 13 |
| 207 | 133.15 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 17 | 16 |
| 219 | 133.21 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 13 | 1 |
| 235 | 133.25 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 236 | 133.25 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 17 | 16 |
| 249 | 133.27 | humidity | 70.0 | 4320 | < th | dose dependent | rect. | 15 | 1 |
| 255 | 133.28 | humidity | 50.0 | 4320 | > th | dose dependent | rect. | 6 | 16 |
| 280 | 133.32 | humidity | 70.0 | 4320 | < th | dose dependent | rect. | 13 | 3 |
| 283 | 133.33 | humidity | 80.0 | 4320 | > th | dose independent | rect. | 19 | 2 |
| 314 | 133.36 | humidity | 80.0 | 4320 | < th | dose dependent | rect. | 5 | 22 |
| 320 | 133.37 | humidity | 80.0 | 4320 | < th | dose dependent | no | NA | NA |
| 325 | 133.37 | humidity | 80.0 | 4320 | < th | dose dependent | rect. | 5 | 20 |
| 332 | 133.38 | humidity | 70.0 | 4320 | < th | dose dependent | rect. | 13 | 1 |
| 344 | 133.39 | humidity | 80.0 | 4320 | > th | dose independent | rect. | 18 | 4 |
| 386 | 133.41 | humidity | 90.0 | 4320 | > th | dose dependent | rect. | 18 | 2 |
| 395 | 133.41 | humidity | 80.0 | 4320 | < th | dose dependent | rect. | 18 | 23 |
| 397 | 133.42 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 16 | 3 |
| 418 | 133.45 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 16 | 5 |
| 447 | 133.47 | humidity | 50.0 | 4320 | > th | dose dependent | sin | 20 | NA |
| 456 | 133.49 | humidity | 70.0 | 4320 | > th | dose dependent | rect. | 18 | 2 |
| 474 | 133.51 | humidity | 60.0 | 4320 | < th | dose independent | rect. | 11 | 9 |
| 535 | 133.57 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 16 | 22 |
| 571 | 133.62 | humidity | 70.0 | 4320 | > th | dose independent | sin | 12 | NA |
| 624 | 133.67 | humidity | 60.0 | 4320 | > th | dose independent | sin | 21 | NA |
| 634 | 133.68 | humidity | 70.0 | 4320 | > th | dose independent | rect. | 16 | 8 |
| 639 | 133.68 | humidity | 70.0 | 4320 | > th | dose independent | rect. | 16 | 12 |
| 660 | 133.69 | humidity | 70.0 | 4320 | > th | dose independent | rect. | 16 | 6 |
| 667 | 133.69 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 7 | 4 |
| 687 | 133.71 | humidity | 90.0 | 4320 | > th | dose dependent | rect. | 6 | 7 |
| 688 | 133.71 | humidity | 50.0 | 4320 | > th | dose dependent | rect. | 15 | 7 |
| 706 | 133.72 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 3 | 4 |
| 714 | 133.73 | humidity | 70.0 | 4320 | < th | dose independent | rect. | 15 | 20 |
| 716 | 133.73 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 7 | 4 |
| 751 | 133.75 | humidity | 70.0 | 4320 | > th | dose independent | rect. | 15 | 20 |
| 763 | 133.76 | humidity | 60.0 | 4320 | > th | dose dependent | rect. | 10 | 1 |
| 776 | 133.78 | humidity | 90.0 | 4320 | > th | dose dependent | rect. | 6 | 5 |
| 849 | 133.81 | humidity | 70.0 | 4320 | < th | dose independent | sin | 12 | NA |
| 850 | 133.81 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 14 | 5 |
| 878 | 133.81 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 14 | 5 |
| 884 | 133.82 | humidity | 70.0 | 4320 | < th | dose independent | rect. | 9 | 10 |
| 918 | 133.84 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 14 | 5 |
| 939 | 133.84 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 5 | 2 |