Os02g0762800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : DEAD/DEAH box helicase, N-terminal domain containing protein.
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Os02g0762800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : DEAD/DEAH box helicase, N-terminal domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 177.94 | 0.627 | 3.09 | -0.115 | 0.121 | -3.49 | -0.637 | -7.69 | -0.0539 | 2.41 | 8.93 | 27 | -- | -- |
| 180.34 | 0.625 | 3.05 | -0.144 | 0.117 | -1.45 | -0.813 | -- | -0.0375 | 2.35 | 8.8 | 25 | -- | -- |
| 179.32 | 0.624 | 3.09 | -0.0992 | 0.116 | -3.66 | -- | -8.81 | -0.0532 | 1.9 | 8.92 | 28 | -- | -- |
| 182.1 | 0.628 | 3.06 | -0.156 | 0.119 | -1.44 | -- | -- | -0.033 | 1.97 | 8.8 | 18 | -- | -- |
| 180.11 | 0.625 | 3.09 | -0.1 | -- | -3.58 | -- | -8.82 | -0.0526 | -- | 8.921 | 28 | -- | -- |
| 185.23 | 0.638 | 3.07 | -0.246 | 0.0768 | -- | -0.586 | -- | -0.0801 | 1.7 | -- | -- | -- | -- |
| 186.57 | 0.64 | 3.07 | -0.227 | 0.0767 | -- | -- | -- | -0.0766 | 1.12 | -- | -- | -- | -- |
| 182.88 | 0.63 | 3.06 | -0.144 | -- | -1.35 | -- | -- | -0.0428 | -- | 8.825 | 18 | -- | -- |
| 182.63 | 0.629 | 3.06 | -- | 0.116 | -1.53 | -- | -- | -0.0299 | 1.86 | 8.821 | 18 | -- | -- |
| 186.94 | 0.639 | 3.07 | -0.224 | -- | -- | -- | -- | -0.0751 | -- | -- | -- | -- | -- |
| 187.93 | 0.641 | 3.07 | -- | 0.073 | -- | -- | -- | -0.0514 | 0.999 | -- | -- | -- | -- |
| 183.44 | 0.631 | 3.06 | -- | -- | -1.44 | -- | -- | -0.0289 | -- | 8.816 | 18 | -- | -- |
| 188.26 | 0.64 | 3.06 | -- | -- | -- | -- | -- | -0.0503 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 173.13 | wind | 1.0 | 10 | < th | dose independent | rect. | 8 | 1 |
| 3 | 173.13 | wind | 1.0 | 10 | < th | dose dependent | rect. | 8 | 1 |
| 6 | 174.96 | wind | 1.0 | 30 | < th | dose independent | rect. | 4 | 1 |
| 7 | 174.99 | wind | 1.0 | 30 | < th | dose dependent | rect. | 4 | 1 |
| 10 | 175.23 | precipitation | 0.1 | 10 | > th | dose independent | rect. | 3 | 1 |
| 14 | 175.23 | precipitation | 0.1 | 10 | > th | dose dependent | rect. | 3 | 1 |
| 24 | 176.96 | wind | 1.0 | 10 | < th | dose independent | rect. | 3 | 5 |
| 26 | 177.10 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 4 | 1 |
| 27 | 177.10 | wind | 9.0 | 30 | > th | dose dependent | sin | 5 | NA |
| 29 | 177.12 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 4 | 1 |
| 30 | 177.15 | wind | 1.0 | 90 | < th | dose independent | rect. | 6 | 1 |
| 31 | 177.16 | wind | 1.0 | 10 | < th | dose dependent | rect. | 3 | 3 |
| 33 | 177.21 | wind | 9.0 | 30 | > th | dose dependent | rect. | 11 | 3 |
| 35 | 177.23 | wind | 9.0 | 30 | > th | dose dependent | rect. | 21 | 17 |
| 39 | 177.24 | wind | 1.0 | 10 | < th | dose dependent | rect. | 3 | 5 |
| 40 | 177.30 | atmosphere | 1005.0 | 90 | < th | dose dependent | rect. | 2 | 1 |
| 60 | 177.32 | wind | 1.0 | 90 | < th | dose independent | rect. | 6 | 3 |
| 79 | 177.57 | wind | 9.0 | 30 | < th | dose independent | sin | 23 | NA |
| 80 | 177.58 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 2 | 3 |
| 81 | 177.60 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 2 | 3 |
| 88 | 177.75 | atmosphere | 1005.0 | 10 | < th | dose dependent | rect. | 4 | 1 |
| 96 | 177.87 | temperature | 30.0 | 90 | > th | dose dependent | rect. | 18 | 1 |
| 111 | 177.89 | humidity | 70.0 | 30 | < th | dose independent | rect. | 19 | 1 |
| 126 | 177.91 | wind | 9.0 | 30 | > th | dose dependent | rect. | 11 | 1 |
| 129 | 177.93 | humidity | 70.0 | 10 | < th | dose dependent | rect. | 19 | 1 |
| 146 | 177.98 | radiation | 10.0 | 1440 | > th | dose independent | rect. | 17 | 1 |
| 224 | 178.16 | temperature | 30.0 | 90 | > th | dose independent | rect. | 18 | 1 |
| 243 | 178.19 | atmosphere | 1005.0 | 90 | > th | dose dependent | rect. | 7 | 2 |
| 273 | 178.36 | wind | 9.0 | 30 | > th | dose independent | rect. | 11 | 3 |
| 276 | 178.40 | wind | 1.0 | 10 | < th | dose independent | rect. | 22 | 1 |
| 279 | 178.40 | wind | 1.0 | 10 | < th | dose dependent | rect. | 22 | 1 |
| 281 | 178.42 | wind | 9.0 | 30 | < th | dose independent | no | NA | NA |
| 341 | 178.70 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 3 | 9 |
| 344 | 178.72 | wind | 1.0 | 270 | < th | dose dependent | rect. | 4 | 1 |
| 345 | 178.73 | wind | 9.0 | 30 | > th | dose independent | sin | 5 | NA |
| 346 | 178.73 | humidity | 90.0 | 4320 | < th | dose independent | rect. | 6 | 1 |
| 386 | 178.76 | wind | 9.0 | 30 | > th | dose independent | rect. | 21 | 17 |
| 390 | 178.76 | humidity | 80.0 | 720 | < th | dose dependent | rect. | 23 | 1 |
| 391 | 178.76 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 5 | 19 |
| 393 | 178.77 | radiation | 10.0 | 14400 | > th | dose independent | rect. | 17 | 13 |
| 401 | 178.81 | atmosphere | 1015.0 | 1440 | > th | dose independent | rect. | 3 | 9 |
| 417 | 178.87 | atmosphere | 1015.0 | 1440 | > th | dose dependent | rect. | 2 | 10 |
| 451 | 178.91 | atmosphere | 1015.0 | 1440 | > th | dose dependent | rect. | 3 | 8 |
| 457 | 178.94 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 20 | 7 |
| 490 | 179.03 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 11 | 1 |
| 497 | 179.04 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 11 | 14 |
| 504 | 179.05 | wind | 1.0 | 90 | > th | dose dependent | rect. | 19 | 21 |
| 522 | 179.09 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 24 | 15 |
| 537 | 179.10 | wind | 9.0 | 30 | > th | dose independent | rect. | 11 | 1 |
| 550 | 179.11 | temperature | 20.0 | 1440 | > th | dose independent | sin | 8 | NA |
| 555 | 179.12 | humidity | 80.0 | 720 | < th | dose independent | rect. | 23 | 1 |
| 560 | 179.13 | humidity | 80.0 | 270 | < th | dose independent | rect. | 21 | 9 |
| 586 | 179.16 | wind | 9.0 | 14400 | < th | dose independent | rect. | 11 | 1 |
| 624 | 179.20 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 10 | 1 |
| 652 | 179.23 | wind | 9.0 | 14400 | > th | dose independent | rect. | 11 | 1 |
| 660 | 179.23 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 14 | 16 |
| 671 | 179.24 | radiation | 10.0 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 710 | 179.26 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 24 | 15 |
| 725 | 179.28 | temperature | 20.0 | 4320 | < th | dose independent | sin | 14 | NA |
| 755 | 179.28 | temperature | 25.0 | 720 | < th | dose dependent | sin | 20 | NA |
| 770 | 179.29 | wind | 3.0 | 90 | > th | dose dependent | rect. | 11 | 5 |
| 771 | 179.29 | humidity | 80.0 | 270 | < th | dose dependent | rect. | 21 | 9 |
| 799 | 179.32 | temperature | 20.0 | 1440 | < th | dose independent | sin | 8 | NA |
| 823 | 179.34 | temperature | 20.0 | 4320 | > th | dose independent | sin | 14 | NA |
| 849 | 179.35 | atmosphere | 1015.0 | 1440 | > th | dose independent | rect. | 10 | 1 |
| 878 | 179.35 | atmosphere | 1015.0 | 1440 | > th | dose dependent | rect. | 10 | 1 |
| 895 | 179.36 | humidity | 90.0 | 4320 | > th | dose independent | rect. | 5 | 2 |
| 956 | 179.40 | humidity | 80.0 | 270 | < th | dose dependent | rect. | 22 | 4 |
| 998 | 179.43 | wind | 5.0 | 1440 | < th | dose independent | rect. | 12 | 1 |