Os03g0101700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to SNF2P.
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Os03g0101700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to SNF2P.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 182.92 | 0.635 | 10.3 | -2.17 | 1.81 | -0.746 | -1.08 | 0.0209 | -0.548 | 14.9 | 9.99 | 12 | -- | -- |
| 182.92 | 0.63 | 10.3 | -2.17 | 1.81 | -0.745 | -1.1 | -- | -0.549 | 14.9 | 9.963 | 12 | -- | -- |
| 185.07 | 0.634 | 10.3 | -2.15 | 1.8 | -0.759 | -- | 0.567 | -0.544 | 14.9 | 9.928 | 12 | -- | -- |
| 187.06 | 0.637 | 10.3 | -2.19 | 1.81 | -0.743 | -- | -- | -0.557 | 14.9 | 9.85 | 12 | -- | -- |
| 215.99 | 0.684 | 10.3 | -2.18 | -- | -1.86 | -- | 2.03 | -0.684 | -- | 6.882 | 200 | -- | -- |
| 199.56 | 0.662 | 10.3 | -2.22 | 2.45 | -- | -1.02 | -- | -0.577 | 14.1 | -- | -- | -- | -- |
| 203.48 | 0.668 | 10.3 | -2.25 | 2.45 | -- | -- | -- | -0.583 | 14 | -- | -- | -- | -- |
| 207.36 | 0.671 | 10.3 | -2.14 | -- | -2.01 | -- | -- | -0.599 | -- | 6.81 | 207 | -- | -- |
| 313.55 | 0.825 | 10.2 | -- | 1.78 | -0.847 | -- | -- | -0.342 | 15 | 9.99 | 12 | -- | -- |
| 564.37 | 1.11 | 10.3 | -2.35 | -- | -- | -- | -- | -0.641 | -- | -- | -- | -- | -- |
| 336.81 | 0.858 | 10.2 | -- | 2.49 | -- | -- | -- | -0.333 | 14.1 | -- | -- | -- | -- |
| 336.93 | 0.855 | 10.2 | -- | -- | -2.08 | -- | -- | -0.369 | -- | 7.54 | 197 | -- | -- |
| 710.2 | 1.24 | 10.2 | -- | -- | -- | -- | -- | -0.38 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 166.33 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 19 | 7 |
| 4 | 167.45 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 6 | 20 |
| 5 | 167.45 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 6 | 20 |
| 6 | 167.90 | radiation | 10.0 | 270 | < th | dose independent | rect. | 2 | 5 |
| 7 | 168.07 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 15 | 15 |
| 8 | 168.09 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 2 | 4 |
| 9 | 168.09 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 2 | 4 |
| 10 | 168.10 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 6 | 20 |
| 12 | 168.18 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 2 | 5 |
| 13 | 168.25 | radiation | 30.0 | 270 | < th | dose independent | rect. | 15 | 15 |
| 15 | 168.28 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 2 | 4 |
| 17 | 168.34 | wind | 7.0 | 270 | < th | dose independent | rect. | 2 | 4 |
| 19 | 168.41 | temperature | 10.0 | 270 | > th | dose independent | rect. | 2 | 4 |
| 21 | 168.41 | temperature | 30.0 | 270 | < th | dose independent | rect. | 2 | 4 |
| 22 | 168.41 | humidity | 50.0 | 270 | > th | dose independent | rect. | 2 | 4 |
| 25 | 168.41 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 2 | 4 |
| 26 | 168.41 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 2 | 4 |
| 30 | 168.41 | temperature | 10.0 | 270 | > th | dose independent | rect. | 6 | 20 |
| 32 | 168.42 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 2 | 4 |
| 36 | 168.60 | wind | 9.0 | 270 | < th | dose independent | rect. | 6 | 20 |
| 43 | 169.32 | wind | 1.0 | 270 | > th | dose independent | rect. | 2 | 4 |
| 44 | 169.34 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 7 | 18 |
| 47 | 169.76 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 7 | 18 |
| 49 | 169.76 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 7 | 18 |
| 57 | 169.92 | temperature | 20.0 | 270 | > th | dose independent | rect. | 20 | 6 |
| 58 | 169.93 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 2 | 17 |
| 63 | 170.13 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 2 | 13 |
| 66 | 170.24 | humidity | 50.0 | 270 | > th | dose independent | rect. | 6 | 20 |
| 70 | 170.32 | humidity | 70.0 | 270 | > th | dose independent | rect. | 1 | 6 |
| 72 | 170.33 | wind | 1.0 | 270 | > th | dose independent | rect. | 1 | 6 |
| 75 | 170.34 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 6 | 9 |
| 76 | 170.34 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 6 | 9 |
| 77 | 170.36 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 1 | 6 |
| 78 | 170.36 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 1 | 6 |
| 79 | 170.41 | temperature | 10.0 | 270 | > th | dose independent | rect. | 6 | 9 |
| 80 | 170.41 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 6 | 9 |
| 81 | 170.41 | temperature | 10.0 | 270 | > th | dose independent | rect. | 15 | 15 |
| 83 | 170.44 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 2 | 15 |
| 95 | 170.64 | wind | 7.0 | 270 | < th | dose independent | rect. | 1 | 6 |
| 98 | 170.65 | temperature | 10.0 | 270 | > th | dose independent | rect. | 1 | 6 |
| 100 | 170.65 | temperature | 30.0 | 270 | < th | dose independent | rect. | 1 | 6 |
| 101 | 170.65 | humidity | 50.0 | 270 | > th | dose independent | rect. | 1 | 6 |
| 103 | 170.65 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 1 | 6 |
| 104 | 170.65 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 1 | 6 |
| 106 | 170.65 | temperature | 10.0 | 270 | > th | dose independent | rect. | 7 | 18 |
| 124 | 170.80 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 19 | 7 |
| 125 | 170.80 | wind | 9.0 | 270 | < th | dose independent | rect. | 7 | 18 |
| 139 | 171.03 | wind | 7.0 | 270 | < th | dose independent | rect. | 19 | 7 |
| 140 | 171.04 | humidity | 50.0 | 270 | > th | dose independent | rect. | 6 | 9 |
| 141 | 171.05 | humidity | 70.0 | 270 | > th | dose independent | rect. | 19 | 7 |
| 142 | 171.05 | wind | 9.0 | 270 | < th | dose dependent | rect. | 2 | 4 |
| 148 | 171.10 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 6 | 9 |
| 167 | 171.31 | wind | 9.0 | 270 | < th | dose independent | rect. | 6 | 9 |
| 192 | 171.53 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 15 | 15 |
| 193 | 171.58 | wind | 9.0 | 270 | < th | dose independent | rect. | 15 | 15 |
| 198 | 171.64 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 19 | 7 |
| 199 | 171.64 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 19 | 7 |
| 200 | 171.65 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 20 | 5 |
| 202 | 171.66 | radiation | 10.0 | 90 | < th | dose independent | rect. | 4 | 16 |
| 247 | 171.97 | humidity | 50.0 | 270 | > th | dose independent | rect. | 7 | 18 |
| 250 | 171.99 | temperature | 10.0 | 270 | > th | dose independent | rect. | 19 | 7 |
| 251 | 171.99 | temperature | 30.0 | 270 | < th | dose independent | rect. | 19 | 7 |
| 253 | 171.99 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 19 | 7 |
| 254 | 171.99 | radiation | 1.0 | 270 | < th | dose independent | rect. | 19 | 7 |
| 259 | 171.99 | temperature | 10.0 | 270 | > th | dose independent | rect. | 2 | 17 |
| 260 | 171.99 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 2 | 17 |
| 261 | 171.99 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 19 | 7 |
| 269 | 172.06 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 2 | 4 |
| 270 | 172.09 | radiation | 10.0 | 10 | < th | dose independent | rect. | 5 | 15 |
| 276 | 172.20 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 15 | 15 |
| 278 | 172.20 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 15 | 15 |
| 281 | 172.24 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 11 | 9 |
| 285 | 172.27 | wind | 9.0 | 270 | < th | dose independent | rect. | 2 | 17 |
| 298 | 172.47 | radiation | 20.0 | 10 | < th | dose dependent | rect. | 5 | 15 |
| 299 | 172.51 | wind | 9.0 | 270 | < th | dose dependent | rect. | 19 | 7 |
| 311 | 172.67 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 2 | 17 |
| 312 | 172.67 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 2 | 17 |
| 315 | 172.71 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 19 | 7 |
| 332 | 172.94 | radiation | 20.0 | 90 | < th | dose dependent | rect. | 4 | 16 |
| 333 | 172.96 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 20 | 15 |
| 431 | 173.56 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 20 | 15 |
| 434 | 173.58 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 2 | 4 |
| 471 | 173.75 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 20 | 9 |
| 472 | 173.77 | wind | 9.0 | 270 | < th | dose dependent | rect. | 20 | 5 |
| 510 | 174.00 | radiation | 1.0 | 270 | < th | dose independent | rect. | 2 | 14 |
| 544 | 174.17 | humidity | 50.0 | 270 | > th | dose independent | rect. | 20 | 15 |
| 546 | 174.19 | wind | 1.0 | 270 | > th | dose independent | rect. | 6 | 9 |
| 550 | 174.20 | temperature | 15.0 | 270 | > th | dose independent | rect. | 11 | 9 |
| 553 | 174.21 | wind | 1.0 | 270 | > th | dose independent | rect. | 7 | 18 |
| 573 | 174.34 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 11 | 9 |
| 574 | 174.34 | temperature | 10.0 | 270 | > th | dose independent | rect. | 20 | 15 |
| 575 | 174.34 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 20 | 15 |
| 579 | 174.35 | wind | 9.0 | 270 | < th | dose independent | rect. | 20 | 15 |
| 588 | 174.41 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 20 | 15 |
| 590 | 174.41 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 20 | 15 |
| 642 | 174.62 | radiation | 30.0 | 10 | < th | dose independent | rect. | 14 | 18 |
| 650 | 174.65 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 2 | 4 |
| 666 | 174.72 | radiation | 10.0 | 270 | < th | dose dependent | sin | 4 | NA |
| 681 | 174.80 | temperature | 30.0 | 270 | < th | dose independent | rect. | 20 | 15 |
| 688 | 174.86 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 6 | 20 |
| 714 | 174.88 | temperature | 10.0 | 90 | > th | dose independent | rect. | 4 | 16 |
| 715 | 174.88 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 4 | 16 |
| 739 | 174.94 | wind | 9.0 | 270 | < th | dose dependent | rect. | 6 | 20 |
| 742 | 174.96 | wind | 9.0 | 270 | < th | dose independent | rect. | 11 | 9 |
| 758 | 175.04 | wind | 9.0 | 90 | < th | dose independent | rect. | 4 | 16 |
| 771 | 175.08 | atmosphere | 1015.0 | 10 | < th | dose independent | rect. | 8 | 19 |
| 787 | 175.11 | humidity | 70.0 | 10 | > th | dose independent | rect. | 3 | 5 |
| 798 | 175.17 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 14 | 18 |
| 831 | 175.29 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 4 | 16 |
| 841 | 175.33 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 4 | 16 |
| 842 | 175.33 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 4 | 16 |
| 855 | 175.37 | wind | 1.0 | 270 | > th | dose independent | rect. | 14 | 16 |
| 863 | 175.40 | radiation | 30.0 | 10 | < th | dose independent | rect. | 3 | 5 |
| 881 | 175.44 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 3 | 2 |
| 895 | 175.49 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 11 | 9 |
| 898 | 175.49 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 11 | 9 |
| 950 | 175.60 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 2 | 4 |
| 992 | 175.69 | wind | 1.0 | 270 | > th | dose independent | rect. | 11 | 9 |