Os06g0183800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Chromatin remodeling factor CHD3 (GYMNOS/PICKLE).
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Os06g0183800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Chromatin remodeling factor CHD3 (GYMNOS/PICKLE).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 20.52 | 0.213 | 11.2 | 1.35 | 0.0931 | -1.01 | 0.0785 | 1.43 | 0.551 | 6.27 | 15.75 | 241 | -- | -- |
| 21.61 | 0.216 | 11.2 | 1.13 | 0.0832 | -1.04 | -0.347 | -- | 0.49 | 3.93 | 14.49 | 298 | -- | -- |
| 20.53 | 0.211 | 11.2 | 1.35 | 0.0894 | -1.01 | -- | 1.38 | 0.549 | 5.43 | 15.64 | 265 | -- | -- |
| 21.94 | 0.218 | 11.2 | 1.12 | 0.0796 | -1.02 | -- | -- | 0.489 | 4.72 | 14.22 | 282 | -- | -- |
| 20.81 | 0.212 | 11.2 | 1.38 | -- | -1.07 | -- | 1.4 | 0.565 | -- | 16.24 | 270 | -- | -- |
| 33.02 | 0.269 | 11.2 | 0.905 | 0.383 | -- | -0.13 | -- | 0.341 | 4.8 | -- | -- | -- | -- |
| 33.07 | 0.269 | 11.2 | 0.906 | 0.382 | -- | -- | -- | 0.341 | 4.84 | -- | -- | -- | -- |
| 22.21 | 0.219 | 11.2 | 1.14 | -- | -1.11 | -- | -- | 0.502 | -- | 14.36 | 269 | -- | -- |
| 51.83 | 0.337 | 11.2 | -- | 0.296 | -0.517 | -- | -- | 0.302 | 5.93 | 12.04 | 284 | -- | -- |
| 40.78 | 0.298 | 11.2 | 0.92 | -- | -- | -- | -- | 0.351 | -- | -- | -- | -- | -- |
| 54.69 | 0.346 | 11.3 | -- | 0.399 | -- | -- | -- | 0.24 | 4.77 | -- | -- | -- | -- |
| 53.13 | 0.339 | 11.2 | -- | -- | -0.584 | -- | -- | 0.308 | -- | 23.49 | 282 | -- | -- |
| 63.11 | 0.371 | 11.3 | -- | -- | -- | -- | -- | 0.249 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 19.14 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 2 | 19.41 | wind | 9.0 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 4 | 19.54 | wind | 9.0 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 7 | 19.98 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 8 | 19.98 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 9 | 20.00 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 11 | 20.25 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 1 |
| 12 | 20.26 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 14 | 20.44 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 15 | 1 |
| 15 | 20.46 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 6 | 23 |
| 16 | 20.52 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 17 | 11 |
| 17 | 20.54 | temperature | 15.0 | 270 | > th | dose dependent | no | NA | NA |
| 21 | 20.57 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 17 | 7 |
| 25 | 20.61 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 34 | 20.69 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 35 | 20.69 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 19 | 23 |
| 36 | 20.70 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 38 | 20.71 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 21 | 1 |
| 43 | 20.75 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 23 | 1 |
| 44 | 20.75 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 14 | 1 |
| 51 | 20.76 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 20 | 8 |
| 62 | 20.85 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 69 | 20.87 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 23 | 23 |
| 70 | 20.89 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 15 | 1 |
| 75 | 20.91 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 13 | 9 |
| 78 | 20.93 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 86 | 20.94 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 10 | 23 |
| 91 | 20.96 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 21 | 11 |
| 105 | 20.99 | wind | 9.0 | 43200 | > th | dose dependent | sin | 14 | NA |
| 127 | 21.03 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 4 | 17 |
| 135 | 21.04 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 8 | 23 |
| 140 | 21.05 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 21 | 7 |
| 157 | 21.08 | temperature | 20.0 | 1440 | > th | dose dependent | sin | 18 | NA |
| 158 | 21.08 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 167 | 21.09 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 21 | 7 |
| 173 | 21.10 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 21 | 4 |
| 180 | 21.10 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 13 | 21 |
| 200 | 21.13 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 23 | 1 |
| 205 | 21.13 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 1 | 2 |
| 215 | 21.14 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 21 | 11 |
| 319 | 21.23 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 18 | 1 |
| 346 | 21.25 | wind | 5.0 | 43200 | < th | dose independent | rect. | 14 | 18 |
| 397 | 21.28 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 458 | 21.32 | wind | 5.0 | 43200 | > th | dose independent | rect. | 14 | 18 |
| 464 | 21.32 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 3 | 18 |
| 491 | 21.34 | wind | 9.0 | 43200 | > th | dose independent | rect. | 18 | 10 |
| 518 | 21.35 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 17 | 2 |
| 529 | 21.35 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 555 | 21.37 | wind | 1.0 | 43200 | > th | dose independent | rect. | 8 | 2 |
| 556 | 21.37 | wind | 9.0 | 43200 | > th | dose independent | rect. | 18 | 6 |
| 604 | 21.39 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 5 | 12 |
| 659 | 21.42 | wind | 1.0 | 43200 | > th | dose dependent | sin | 1 | NA |
| 765 | 21.45 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 767 | 21.46 | wind | 3.0 | 43200 | > th | dose dependent | no | NA | NA |
| 823 | 21.48 | wind | 9.0 | 43200 | < th | dose dependent | sin | 1 | NA |
| 854 | 21.49 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 18 | 12 |
| 855 | 21.49 | wind | 5.0 | 43200 | < th | dose independent | rect. | 5 | 16 |
| 978 | 21.52 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 20 | 23 |