Os05g0247900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : DEAD/DEAH box helicase, N-terminal domain containing protein.
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Os05g0247900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : DEAD/DEAH box helicase, N-terminal domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 45.97 | 0.319 | 8.62 | 0.101 | 0.564 | -0.453 | 0.137 | 0.375 | -0.0968 | 8.19 | 20.6 | 114 | -- | -- |
| 46.59 | 0.318 | 8.63 | 0.0434 | 0.557 | -0.493 | 0.174 | -- | -0.11 | 8.26 | 20.42 | 141 | -- | -- |
| 46.02 | 0.316 | 8.62 | 0.105 | 0.564 | -0.45 | -- | 0.385 | -0.0973 | 8.11 | 20.58 | 114 | -- | -- |
| 46.67 | 0.318 | 8.63 | 0.0449 | 0.558 | -0.489 | -- | -- | -0.111 | 8.14 | 20.45 | 141 | -- | -- |
| 63.15 | 0.37 | 8.64 | 0.0848 | -- | -0.445 | -- | 0.321 | -0.0885 | -- | 20.5 | 149 | -- | -- |
| 55.73 | 0.35 | 8.65 | -0.0911 | 0.559 | -- | -0.0219 | -- | -0.204 | 7.39 | -- | -- | -- | -- |
| 55.73 | 0.35 | 8.65 | -0.0916 | 0.559 | -- | -- | -- | -0.204 | 7.41 | -- | -- | -- | -- |
| 63.07 | 0.37 | 8.64 | 0.0682 | -- | -0.538 | -- | -- | -0.111 | -- | 19.9 | 221 | -- | -- |
| 46.72 | 0.318 | 8.63 | -- | 0.558 | -0.482 | -- | -- | -0.116 | 8.12 | 20.42 | 141 | -- | -- |
| 72.4 | 0.398 | 8.67 | -0.0825 | -- | -- | -- | -- | -0.195 | -- | -- | -- | -- | -- |
| 55.96 | 0.35 | 8.65 | -- | 0.558 | -- | -- | -- | -0.194 | 7.42 | -- | -- | -- | -- |
| 63.22 | 0.37 | 8.65 | -- | -- | -0.535 | -- | -- | -0.116 | -- | 19.88 | 230 | -- | -- |
| 72.58 | 0.398 | 8.66 | -- | -- | -- | -- | -- | -0.186 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 37.29 | temperature | 20 | 10 | > th | dose independent | rect. | 20 | 9 |
| 2 | 37.76 | temperature | 20 | 270 | > th | dose independent | rect. | 18 | 9 |
| 5 | 37.88 | temperature | 30 | 270 | < th | dose dependent | rect. | 15 | 16 |
| 11 | 38.29 | temperature | 10 | 270 | > th | dose dependent | rect. | 18 | 9 |
| 25 | 38.91 | temperature | 15 | 10 | > th | dose dependent | rect. | 20 | 9 |
| 43 | 39.35 | temperature | 20 | 90 | > th | dose independent | rect. | 9 | 19 |
| 45 | 39.43 | temperature | 20 | 10 | > th | dose independent | rect. | 9 | 20 |
| 124 | 40.88 | temperature | 20 | 90 | > th | dose independent | rect. | 11 | 17 |
| 145 | 41.19 | temperature | 20 | 10 | > th | dose independent | rect. | 11 | 18 |
| 168 | 41.38 | temperature | 10 | 10 | > th | dose dependent | rect. | 9 | 20 |
| 421 | 43.20 | temperature | 25 | 270 | < th | dose dependent | rect. | 21 | 9 |
| 449 | 43.36 | temperature | 25 | 270 | < th | dose dependent | sin | 12 | NA |
| 454 | 43.41 | temperature | 20 | 270 | < th | dose independent | rect. | 16 | 14 |
| 472 | 43.53 | temperature | 25 | 90 | < th | dose dependent | sin | 10 | NA |
| 512 | 43.75 | temperature | 10 | 10 | > th | dose dependent | rect. | 11 | 18 |
| 531 | 43.88 | temperature | 20 | 90 | > th | dose independent | rect. | 21 | 17 |
| 534 | 43.89 | temperature | 20 | 90 | > th | dose independent | rect. | 20 | 19 |
| 538 | 43.90 | temperature | 20 | 270 | < th | dose independent | rect. | 21 | 9 |
| 580 | 44.07 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 3 |
| 588 | 44.10 | temperature | 20 | 270 | > th | dose independent | sin | 13 | NA |
| 591 | 44.11 | temperature | 25 | 720 | < th | dose dependent | rect. | 18 | 4 |
| 637 | 44.31 | temperature | 20 | 10 | < th | dose independent | rect. | 18 | 15 |
| 638 | 44.31 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 8 | 18 |
| 639 | 44.31 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 7 | 20 |
| 715 | 44.51 | temperature | 30 | 270 | < th | dose dependent | rect. | 2 | 5 |
| 725 | 44.54 | temperature | 20 | 270 | < th | dose independent | sin | 12 | NA |
| 736 | 44.58 | temperature | 20 | 90 | < th | dose independent | sin | 10 | NA |
| 776 | 44.69 | temperature | 20 | 10 | > th | dose independent | rect. | 20 | 18 |
| 782 | 44.70 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 9 | 20 |
| 785 | 44.71 | atmosphere | 1010 | 10 | < th | dose independent | rect. | 20 | 9 |
| 789 | 44.72 | temperature | 25 | 720 | < th | dose dependent | rect. | 21 | 1 |
| 793 | 44.73 | temperature | 20 | 10 | > th | dose independent | rect. | 20 | 20 |
| 887 | 44.97 | humidity | 50 | 270 | > th | dose independent | rect. | 3 | 15 |
| 899 | 45.00 | humidity | 80 | 10 | > th | dose independent | rect. | 20 | 9 |
| 921 | 45.05 | temperature | 20 | 10 | < th | dose independent | sin | 9 | NA |
| 959 | 45.11 | atmosphere | 1015 | 10 | < th | dose independent | rect. | 9 | 20 |
| 972 | 45.15 | atmosphere | 1015 | 270 | < th | dose independent | rect. | 8 | 18 |
| 999 | 45.20 | atmosphere | 1015 | 270 | < th | dose independent | rect. | 7 | 20 |