Os07g0124600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : RNA-binding region RNP-1 (RNA recognition motif) domain containing protein.
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Os07g0124600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : RNA-binding region RNP-1 (RNA recognition motif) domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 50.4 | 0.334 | 10.4 | 0.269 | 0.584 | 1.12 | 0.593 | 0.6 | 0.0658 | 17.2 | 20 | 4106 | -- | -- |
| 50.37 | 0.331 | 10.4 | 0.278 | 0.575 | 0.965 | 0.561 | -- | 0.0765 | 17.3 | 20.1 | 2932 | -- | -- |
| 50.58 | 0.331 | 10.4 | 0.349 | 0.585 | 1.12 | -- | 0.638 | 0.0932 | 17.1 | 19.91 | 2906 | -- | -- |
| 50.7 | 0.332 | 10.4 | 0.3 | 0.576 | 0.943 | -- | -- | 0.0669 | 17 | 20.6 | 2728 | -- | -- |
| 66.75 | 0.381 | 10.4 | 0.561 | -- | 1 | -- | 0.787 | 0.0581 | -- | 20.9 | 1890 | -- | -- |
| 68.94 | 0.389 | 10.4 | 0.799 | 0.55 | -- | 0.726 | -- | 0.318 | 17.5 | -- | -- | -- | -- |
| 70.14 | 0.392 | 10.4 | 0.797 | 0.555 | -- | -- | -- | 0.321 | 17.2 | -- | -- | -- | -- |
| 67.01 | 0.381 | 10.4 | 0.389 | -- | 0.881 | -- | -- | 0.0638 | -- | 20.98 | 1900 | -- | -- |
| 52.27 | 0.337 | 10.5 | -- | 0.588 | 1.1 | -- | -- | 0.003 | 17.1 | 20.49 | 2926 | -- | -- |
| 86.23 | 0.434 | 10.4 | 0.778 | -- | -- | -- | -- | 0.307 | -- | -- | -- | -- | -- |
| 86.89 | 0.436 | 10.4 | -- | 0.541 | -- | -- | -- | 0.233 | 17.3 | -- | -- | -- | -- |
| 68.68 | 0.386 | 10.4 | -- | -- | 1.11 | -- | -- | -0.000661 | -- | 20 | 3270 | -- | -- |
| 102.19 | 0.472 | 10.4 | -- | -- | -- | -- | -- | 0.221 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 48.57 | temperature | 20 | 4320 | < th | dose independent | rect. | 16 | 11 |
| 8 | 48.64 | temperature | 20 | 4320 | > th | dose independent | rect. | 16 | 11 |
| 26 | 48.70 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 51 | 48.83 | temperature | 20 | 4320 | < th | dose independent | sin | 16 | NA |
| 61 | 48.90 | temperature | 20 | 4320 | > th | dose independent | sin | 16 | NA |
| 80 | 49.01 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 4 |
| 85 | 49.03 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 89 | 49.05 | temperature | 15 | 90 | > th | dose dependent | sin | 8 | NA |
| 116 | 49.21 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 6 |
| 118 | 49.23 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 6 |
| 245 | 49.83 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 260 | 49.87 | temperature | 20 | 1440 | > th | dose dependent | rect. | 24 | 1 |
| 272 | 49.91 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 317 | 50.04 | temperature | 20 | 4320 | > th | dose independent | rect. | 6 | 22 |
| 368 | 50.19 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 393 | 50.24 | temperature | 20 | 1440 | > th | dose independent | sin | 7 | NA |
| 396 | 50.24 | temperature | 15 | 1440 | > th | dose dependent | rect. | 24 | 4 |
| 478 | 50.35 | temperature | 30 | 90 | < th | dose dependent | sin | 8 | NA |
| 490 | 50.37 | temperature | 30 | 1440 | < th | dose dependent | rect. | 24 | 4 |
| 500 | 50.39 | temperature | 30 | 1440 | < th | dose dependent | rect. | 24 | 1 |
| 503 | 50.40 | temperature | 20 | 1440 | < th | dose independent | sin | 7 | NA |
| 523 | 50.42 | temperature | 15 | 4320 | > th | dose dependent | rect. | 21 | 6 |
| 563 | 50.46 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 23 |
| 605 | 50.50 | temperature | 20 | 4320 | > th | dose independent | no | NA | NA |
| 623 | 50.52 | temperature | 20 | 4320 | < th | dose independent | no | NA | NA |
| 704 | 50.61 | temperature | 20 | 4320 | > th | dose independent | rect. | 3 | 23 |
| 713 | 50.62 | temperature | 20 | 4320 | > th | dose independent | rect. | 1 | 23 |
| 755 | 50.65 | temperature | 20 | 4320 | < th | dose independent | rect. | 1 | 23 |
| 801 | 50.69 | temperature | 20 | 4320 | < th | dose independent | rect. | 23 | 23 |
| 838 | 50.73 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 23 |