BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0124600 Os07g0124600|AK073437
(377 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0124600 RNA-binding region RNP-1 (RNA recognition moti... 542 e-154
Os10g0470900 RNA-binding region RNP-1 (RNA recognition moti... 141 8e-34
Os07g0584500 RNA-binding region RNP-1 (RNA recognition moti... 136 3e-32
Os11g0637700 RNA-binding region RNP-1 (RNA recognition moti... 135 7e-32
AK120313 99 5e-21
Os08g0492100 Paraneoplastic encephalomyelitis antigen famil... 99 5e-21
Os02g0221500 Paraneoplastic encephalomyelitis antigen famil... 98 1e-20
Os01g0766700 97 2e-20
Os08g0320100 RNA-binding region RNP-1 (RNA recognition moti... 96 4e-20
Os06g0566100 RNA-binding region RNP-1 (RNA recognition moti... 79 7e-15
>Os07g0124600 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 377
Score = 542 bits (1396), Expect = e-154, Method: Compositional matrix adjust.
Identities = 282/363 (77%), Positives = 282/363 (77%)
Query: 15 FVGERRKLFVGGIPTSAQEAELRGHFGQYGAVRSVIVMRDKETGHXXXXXXXXXXXXXDA 74
FVGERRKLFVGGIPTSAQEAELRGHFGQYGAVRSVIVMRDKETGH DA
Sbjct: 15 FVGERRKLFVGGIPTSAQEAELRGHFGQYGAVRSVIVMRDKETGHGRGFGFVEFEEEEDA 74
Query: 75 ARALGDGEHPRHLICGRVVDVKRARARPQRNXXXXXXXXXXXXXXXXXXXXPAPVSGTED 134
ARALGDGEHPRHLICGRVVDVKRARARPQRN PAPVSGTED
Sbjct: 75 ARALGDGEHPRHLICGRVVDVKRARARPQRNHDDQSSQHQHFGQGQDQGHQPAPVSGTED 134
Query: 135 GGDGMNYASKKVFIGGLRDNITEEEFKTYFESFGTVTDVVVIYDSMTNRSRGFGFVTFDS 194
GGDGMNYASKKVFIGGLRDNITEEEFKTYFESFGTVTDVVVIYDSMTNRSRGFGFVTFDS
Sbjct: 135 GGDGMNYASKKVFIGGLRDNITEEEFKTYFESFGTVTDVVVIYDSMTNRSRGFGFVTFDS 194
Query: 195 EEAVRKVIEHSFHDLKGTRVEAKIAIPKDAXXXXXXXXXXXXXXXXXXHAGFDGPSYQPY 254
EEAVRKVIEHSFHDLKGTRVEAKIAIPKDA HAGFDGPSYQPY
Sbjct: 195 EEAVRKVIEHSFHDLKGTRVEAKIAIPKDASYYRNGRGRGSRNFGGRGHAGFDGPSYQPY 254
Query: 255 NDRYGFYNSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSNMGAPANIPPGMMTRRPVYG 314
NDRYGFYNS SNMGAPANIPPGMMTRRPVYG
Sbjct: 255 NDRYGFYNSYNMPQPVPPHPYYPGVYYGMGGGYPYANAYSNMGAPANIPPGMMTRRPVYG 314
Query: 315 AYPPMFPGYGVIYRGYVGAAPSIQHDSNGGSDSKKDQTSVDVQEVDSAASVATKLEFMKL 374
AYPPMFPGYGVIYRGYVGAAPSIQHDSNGGSDSKKDQTSVDVQEVDSAASVATKLEFMKL
Sbjct: 315 AYPPMFPGYGVIYRGYVGAAPSIQHDSNGGSDSKKDQTSVDVQEVDSAASVATKLEFMKL 374
Query: 375 GSQ 377
GSQ
Sbjct: 375 GSQ 377
>Os10g0470900 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 464
Score = 141 bits (355), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 85/209 (40%), Positives = 112/209 (53%), Gaps = 6/209 (2%)
Query: 18 ERRKLFVGGIPTSAQEAELRGHFGQYGAVRSVIVMRDKETGHXXXXXXXXXXXXXDAARA 77
++ KLF+GGI E +LR HF YG V VMRDK TG A
Sbjct: 4 DQGKLFIGGISWETTEEKLRDHFAAYGDVSQAAVMRDKLTGRPRGFGFVVFSDPSSVDAA 63
Query: 78 LGDGEHPRHLICGRVVDVKRARARPQRNXXXXXXXXXXXXXXXXXXXXPAPVSGTEDGGD 137
L D H + GR VDVKRA +R ++ G GG
Sbjct: 64 LVD----PHTLDGRTVDVKRALSREEQQAAKAANPSAGGRHASGGGGGGGGAGGGGGGGG 119
Query: 138 GMNYA--SKKVFIGGLRDNITEEEFKTYFESFGTVTDVVVIYDSMTNRSRGFGFVTFDSE 195
G +KK+F+GGL N+TE+EF+ YF+++G VTDVVV+YD T R RGFGF+TFD+E
Sbjct: 120 GDAGGARTKKIFVGGLPSNLTEDEFRQYFQTYGVVTDVVVMYDQNTQRPRGFGFITFDAE 179
Query: 196 EAVRKVIEHSFHDLKGTRVEAKIAIPKDA 224
+AV +V+ +FHDL G VE K A+P++A
Sbjct: 180 DAVDRVLHKTFHDLSGKMVEVKRALPREA 208
>Os07g0584500 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 472
Score = 136 bits (342), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 77/203 (37%), Positives = 106/203 (52%), Gaps = 24/203 (11%)
Query: 21 KLFVGGIPTSAQEAELRGHFGQYGAVRSVIVMRDKETGHXXXXXXXXXXXXXDAARALGD 80
KLFVGGI E LR +F ++G V ++MRD+ TG A R D
Sbjct: 7 KLFVGGISWETDEDRLREYFSRFGEVTEAVIMRDRNTGRARGFGFVVFTDAGVAERVTMD 66
Query: 81 GEHPRHLICGRVVDVKRARARPQRNXXXXXXXXXXXXXXXXXXXXPAPVSGTEDGGDGMN 140
+H+I GR+V+ K+A R ++ P P
Sbjct: 67 ----KHMIDGRMVEAKKAVPRDDQSITSKNNGSSIGS--------PGPGR---------- 104
Query: 141 YASKKVFIGGLRDNITEEEFKTYFESFGTVTDVVVIYDSMTNRSRGFGFVTFDSEEAVRK 200
++K+F+GGL N+TE EF+ YFE FG +TDVVV+YD T R RGFGF+T+DSE+AV K
Sbjct: 105 --TRKIFVGGLASNVTEVEFRRYFEQFGVITDVVVMYDHNTQRPRGFGFITYDSEDAVDK 162
Query: 201 VIEHSFHDLKGTRVEAKIAIPKD 223
+ +FH+L G VE K A+PK+
Sbjct: 163 ALHKNFHELNGKMVEVKRAVPKE 185
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 50/85 (58%), Gaps = 1/85 (1%)
Query: 139 MNYASKKVFIGGLRDNITEEEFKTYFESFGTVTDVVVIYDSMTNRSRGFGFVTFDSEEAV 198
M S K+F+GG+ E+ + YF FG VT+ V++ D T R+RGFGFV F ++ V
Sbjct: 1 MEADSGKLFVGGISWETDEDRLREYFSRFGEVTEAVIMRDRNTGRARGFGFVVF-TDAGV 59
Query: 199 RKVIEHSFHDLKGTRVEAKIAIPKD 223
+ + H + G VEAK A+P+D
Sbjct: 60 AERVTMDKHMIDGRMVEAKKAVPRD 84
>Os11g0637700 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 467
Score = 135 bits (339), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 76/203 (37%), Positives = 106/203 (52%), Gaps = 24/203 (11%)
Query: 21 KLFVGGIPTSAQEAELRGHFGQYGAVRSVIVMRDKETGHXXXXXXXXXXXXXDAARALGD 80
KLF+GGI E LR +F +YG V ++MRD+ TG A R +
Sbjct: 7 KLFIGGISWDTNEDRLREYFDKYGEVVEAVIMRDRATGRARGFGFIVFADPAVAERVI-- 64
Query: 81 GEHPRHLICGRVVDVKRARARPQRNXXXXXXXXXXXXXXXXXXXXPAPVSGTEDGGDGMN 140
+H+I GR+V+ K+A R ++ P P
Sbjct: 65 --MEKHMIDGRMVEAKKAVPRDDQHALSKSGGSAHGS--------PGPSR---------- 104
Query: 141 YASKKVFIGGLRDNITEEEFKTYFESFGTVTDVVVIYDSMTNRSRGFGFVTFDSEEAVRK 200
+KK+F+GGL +TE +F+ YFE FGT+TDVVV+YD T R RGFGF+T+DSE+AV K
Sbjct: 105 --TKKIFVGGLASTVTEADFRKYFEQFGTITDVVVMYDHNTQRPRGFGFITYDSEDAVDK 162
Query: 201 VIEHSFHDLKGTRVEAKIAIPKD 223
+ +FH+L G VE K A+PK+
Sbjct: 163 ALFKTFHELNGKMVEVKRAVPKE 185
>AK120313
Length = 409
Score = 99.0 bits (245), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 65/203 (32%), Positives = 98/203 (48%), Gaps = 36/203 (17%)
Query: 21 KLFVGGIPTSAQEAELRGHFGQYGAVRSVIVMRDKETGHXXXXXXXXXXXXXDAARALGD 80
K+FVGG+ E HF +YGA+ ++M+DK T + L D
Sbjct: 79 KIFVGGVAWETTEESFSKHFEKYGAITDSVIMKDKHTKMPRGSGFVTFSDPSVIDKVLED 138
Query: 81 GEHPRHLICGRVVDVKRARARPQRNXXXXXXXXXXXXXXXXXXXXPAPVSGTEDGGDGMN 140
H+I GR V+VKR R + + ++DG
Sbjct: 139 ----EHVIDGRTVEVKRTVPREEMS--------------------------SKDG----- 163
Query: 141 YASKKVFIGGLRDNITEEEFKTYFESFGTVTDVVVIYDSMTNRSRGFGFVTFDSEEAVRK 200
++K+F+GGL ++TE+E + +F +G + + ++ D T RSRGFGFVTF+SE++V +
Sbjct: 164 PKTRKIFVGGLPSSLTEDELREHFSPYGKIVEHQIMLDHSTGRSRGFGFVTFESEDSVER 223
Query: 201 VI-EHSFHDLKGTRVEAKIAIPK 222
VI E DL G +VE K A PK
Sbjct: 224 VISEGRMRDLGGKQVEIKKAEPK 246
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 51/89 (57%), Gaps = 5/89 (5%)
Query: 135 GGDGMNYASKKVFIGGLRDNITEEEFKTYFESFGTVTDVVVIYDSMTNRSRGFGFVTFDS 194
GGD +S K+F+GG+ TEE F +FE +G +TD V++ D T RG GFVTF
Sbjct: 73 GGD----SSGKIFVGGVAWETTEESFSKHFEKYGAITDSVIMKDKHTKMPRGSGFVTFSD 128
Query: 195 EEAVRKVIEHSFHDLKGTRVEAKIAIPKD 223
+ KV+E H + G VE K +P++
Sbjct: 129 PSVIDKVLEDE-HVIDGRTVEVKRTVPRE 156
>Os08g0492100 Paraneoplastic encephalomyelitis antigen family protein
Length = 362
Score = 99.0 bits (245), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 62/205 (30%), Positives = 95/205 (46%), Gaps = 37/205 (18%)
Query: 21 KLFVGGIPTSAQEAELRGHFGQYGAVRSVIVMRDKETGHXXXXXXXXXXXXXDAARALGD 80
K+FVGG+P EA+ HFGQYG + ++MRDK T R + D
Sbjct: 24 KIFVGGLPRDTTEADFVKHFGQYGEIVDSVIMRDKHTSQPRGFGFITYSNPAVVDRVMDD 83
Query: 81 GEHPRHLICGRVVDVKRARARPQRNXXXXXXXXXXXXXXXXXXXXPAPVSGTEDGGDGMN 140
H G+ V++KR + D +
Sbjct: 84 ----IHEFNGKQVEIKRTIPK--------------------------------DSVQSKD 107
Query: 141 YASKKVFIGGLRDNITEEEFKTYFESFGTVTDVVVIYDSMTNRSRGFGFVTFDSEEAVRK 200
+ +KK+F+GGL +TE++FK +F+ +G V D ++ D T RSRGFGF+ F S++ V
Sbjct: 108 FKTKKIFVGGLPQALTEDDFKHFFQKYGPVVDHQIMRDHQTKRSRGFGFIVFSSDQVVDD 167
Query: 201 VIEH-SFHDLKGTRVEAKIAIPKDA 224
++ + + DL G +VE K A PK +
Sbjct: 168 LLANGNMIDLAGAKVEIKKAEPKKS 192
>Os02g0221500 Paraneoplastic encephalomyelitis antigen family protein
Length = 397
Score = 97.8 bits (242), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 65/203 (32%), Positives = 98/203 (48%), Gaps = 36/203 (17%)
Query: 21 KLFVGGIPTSAQEAELRGHFGQYGAVRSVIVMRDKETGHXXXXXXXXXXXXXDAARALGD 80
K+FVGG+ E HF +YGA+ ++M+DK T + L D
Sbjct: 67 KIFVGGVAWETTEESFSKHFEKYGAITDSVIMKDKHTKMPRGFGFVTFSDPSVIDKVLED 126
Query: 81 GEHPRHLICGRVVDVKRARARPQRNXXXXXXXXXXXXXXXXXXXXPAPVSGTEDGGDGMN 140
H+I GR V+VKR R + + ++DG
Sbjct: 127 ----EHVIDGRTVEVKRTVPREEMS--------------------------SKDGP---- 152
Query: 141 YASKKVFIGGLRDNITEEEFKTYFESFGTVTDVVVIYDSMTNRSRGFGFVTFDSEEAVRK 200
++K+F+GGL ++TE+E + +F +G + + ++ D T RSRGFGFVTF+SE++V +
Sbjct: 153 -KTRKIFVGGLPSSLTEDELREHFSPYGKIVEHQIMLDHSTGRSRGFGFVTFESEDSVER 211
Query: 201 VI-EHSFHDLKGTRVEAKIAIPK 222
VI E DL G +VE K A PK
Sbjct: 212 VISEGRMRDLGGKQVEIKKAEPK 234
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 52/89 (58%), Gaps = 5/89 (5%)
Query: 135 GGDGMNYASKKVFIGGLRDNITEEEFKTYFESFGTVTDVVVIYDSMTNRSRGFGFVTFDS 194
GGD +S K+F+GG+ TEE F +FE +G +TD V++ D T RGFGFVTF
Sbjct: 61 GGD----SSGKIFVGGVAWETTEESFSKHFEKYGAITDSVIMKDKHTKMPRGFGFVTFSD 116
Query: 195 EEAVRKVIEHSFHDLKGTRVEAKIAIPKD 223
+ KV+E H + G VE K +P++
Sbjct: 117 PSVIDKVLEDE-HVIDGRTVEVKRTVPRE 144
>Os01g0766700
Length = 345
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 65/205 (31%), Positives = 97/205 (47%), Gaps = 33/205 (16%)
Query: 21 KLFVGGIPTSAQEAELRGHFGQYGAVRSVIVMRDKETGHXXXXXXXXXXXXXDAARALGD 80
K+FVGG+P E+ELR HF ++G V V ++K+TG DAA A+
Sbjct: 30 KVFVGGVPLGTSESELRAHFSRFGTVAFVGAPKNKQTGAARGFAFVQFVNPDDAAAAIAA 89
Query: 81 GEHPRHLICGRVVDVKRARARPQRNXXXXXXXXXXXXXXXXXXXXPAPVSGTEDGGDGMN 140
G R++I G +D+K A+ +P GG ++
Sbjct: 90 GPD-RNVIRGTTMDIKLAQLKP------------------------------SAGGPQLS 118
Query: 141 YA--SKKVFIGGLRDNITEEEFKTYFESFGTVTDVVVIYDSMTNRSRGFGFVTFDSEEAV 198
+K+F+GGL + TE++ K YF FG V +V+ D T RGFGF+ F SEE+
Sbjct: 119 PGDQKRKIFVGGLPVSATEKKLKEYFNKFGEVNRAIVVIDLNTKMPRGFGFIQFASEEST 178
Query: 199 RKVIEHSFHDLKGTRVEAKIAIPKD 223
+ ++ H L G VE +A+PK
Sbjct: 179 ARALKKDKHFLCGQWVEVSLAMPKQ 203
>Os08g0320100 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 350
Score = 95.9 bits (237), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 61/204 (29%), Positives = 98/204 (48%), Gaps = 38/204 (18%)
Query: 21 KLFVGGIPTSAQEAELRGHFGQYGAVRSVIVMRDKETGHXXXXXXXXXXXXXDAARALGD 80
K+F+GG+P + +FG+YG + ++M+D+ T R + D
Sbjct: 16 KIFIGGLPKDTTMGTFKEYFGKYGEIVDAVIMKDRFTQKPRGFGFITFADPAVVDRVIED 75
Query: 81 GEHPRHLICGRVVDVKRARARPQRNXXXXXXXXXXXXXXXXXXXXPAPVSGTEDGGDGMN 140
H+I G+ V++KR + AP+ +
Sbjct: 76 ----NHVINGKEVEIKRTIPK-----------------------GAAPLK---------D 99
Query: 141 YASKKVFIGGLRDNITEEEFKTYFESFGTVTDVVVIYDSMTNRSRGFGFVTFDSEEAVRK 200
+ +KK+F+GGL + E+EFK +F FG V + +I D TNRSRGFGFV FD+E+ V +
Sbjct: 100 FKTKKIFVGGLPSALKEDEFKEFFSKFGKVVEHEIIRDHSTNRSRGFGFVVFDAEKTVDE 159
Query: 201 VI--EHSFHDLKGTRVEAKIAIPK 222
++ + + DL G++VE K A PK
Sbjct: 160 LLAKKGNMIDLNGSQVEIKKAEPK 183
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Query: 145 KVFIGGLRDNITEEEFKTYFESFGTVTDVVVIYDSMTNRSRGFGFVTFDSEEAVRKVIEH 204
K+FIGGL + T FK YF +G + D V++ D T + RGFGF+TF V +VIE
Sbjct: 16 KIFIGGLPKDTTMGTFKEYFGKYGEIVDAVIMKDRFTQKPRGFGFITFADPAVVDRVIED 75
Query: 205 SFHDLKGTRVEAKIAIPKDA 224
+ H + G VE K IPK A
Sbjct: 76 N-HVINGKEVEIKRTIPKGA 94
>Os06g0566100 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 285
Score = 78.6 bits (192), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 38/81 (46%), Positives = 58/81 (71%), Gaps = 1/81 (1%)
Query: 143 SKKVFIGGLRDNITEEEFKTYFESFGTVTDVVVIYDSMTNRSRGFGFVTFDSEEAVRKVI 202
++K+F+GG+ ++TE++ K +F S+G V + ++ D T RSRGFGFVTF++E+AV +V+
Sbjct: 57 TRKIFVGGIPPSLTEDKLKEHFSSYGKVVEHQIMLDHGTGRSRGFGFVTFENEDAVERVM 116
Query: 203 -EHSFHDLKGTRVEAKIAIPK 222
E HDL G +VE K A PK
Sbjct: 117 SEGRMHDLAGKQVEIKKAEPK 137
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.136 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,474,087
Number of extensions: 371243
Number of successful extensions: 1492
Number of sequences better than 1.0e-10: 10
Number of HSP's gapped: 1478
Number of HSP's successfully gapped: 15
Length of query: 377
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 274
Effective length of database: 11,657,759
Effective search space: 3194225966
Effective search space used: 3194225966
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 157 (65.1 bits)