Os10g0470900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : RNA-binding region RNP-1 (RNA recognition motif) domain containing protein.
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Os10g0470900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : RNA-binding region RNP-1 (RNA recognition motif) domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 34.94 | 0.278 | 12.7 | 1.41 | 1.12 | -0.798 | 0.036 | 1.85 | 0.376 | 15.7 | 15.11 | 725 | -- | -- |
| 36.94 | 0.283 | 12.7 | 1.08 | 1.01 | -0.733 | -0.182 | -- | 0.292 | 15.3 | 12.14 | 1157 | -- | -- |
| 34.94 | 0.275 | 12.7 | 1.41 | 1.12 | -0.79 | -- | 1.87 | 0.377 | 15.7 | 15.39 | 716 | -- | -- |
| 37.01 | 0.283 | 12.7 | 1.08 | 1.01 | -0.733 | -- | -- | 0.291 | 15.3 | 12.08 | 1144 | -- | -- |
| 90.47 | 0.443 | 12.7 | 1.47 | -- | -1.13 | -- | 1.35 | 0.39 | -- | 15.49 | 1116 | -- | -- |
| 45.33 | 0.316 | 12.7 | 0.872 | 1.09 | -- | -0.175 | -- | 0.165 | 15.1 | -- | -- | -- | -- |
| 45.43 | 0.316 | 12.7 | 0.868 | 1.09 | -- | -- | -- | 0.164 | 15.1 | -- | -- | -- | -- |
| 91.93 | 0.447 | 12.7 | 1.15 | -- | -1.11 | -- | -- | 0.33 | -- | 14.7 | 1128 | -- | -- |
| 64.03 | 0.373 | 12.8 | -- | 1.04 | -0.266 | -- | -- | 0.105 | 15.2 | 9.966 | 1121 | -- | -- |
| 112.67 | 0.496 | 12.7 | 0.822 | -- | -- | -- | -- | 0.136 | -- | -- | -- | -- | -- |
| 65.28 | 0.378 | 12.8 | -- | 1.07 | -- | -- | -- | 0.0676 | 15.1 | -- | -- | -- | -- |
| 108.8 | 0.487 | 12.8 | -- | -- | 0.922 | -- | -- | -0.03 | -- | 24.4 | 1174 | -- | -- |
| 130.48 | 0.533 | 12.8 | -- | -- | -- | -- | -- | 0.0447 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 33.23 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 17 | 17 |
| 14 | 33.64 | temperature | 30.0 | 720 | < th | dose dependent | sin | 11 | NA |
| 20 | 33.70 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 20 | 19 |
| 58 | 34.14 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 14 | 3 |
| 59 | 34.15 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 10 | 21 |
| 61 | 34.16 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 1 | 21 |
| 103 | 34.38 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 1 | 23 |
| 116 | 34.47 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 8 | 23 |
| 132 | 34.51 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 23 | 23 |
| 197 | 34.68 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 16 | 23 |
| 217 | 34.73 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 12 | 18 |
| 235 | 34.78 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 16 | 15 |
| 281 | 34.87 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 24 | 8 |
| 286 | 34.88 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 6 | 23 |
| 287 | 34.88 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 305 | 34.93 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 14 | 4 |
| 308 | 34.94 | temperature | 15.0 | 720 | > th | dose dependent | no | NA | NA |
| 344 | 34.99 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 14 | 2 |
| 349 | 34.99 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 14 | 23 |
| 369 | 35.02 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 21 | 23 |
| 390 | 35.04 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 19 | 23 |
| 444 | 35.12 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 11 | 10 |
| 478 | 35.16 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 19 | 6 |
| 486 | 35.17 | temperature | 20.0 | 1440 | > th | dose dependent | sin | 19 | NA |
| 517 | 35.20 | temperature | 30.0 | 720 | < th | dose dependent | no | NA | NA |
| 608 | 35.31 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 3 | 19 |
| 612 | 35.32 | temperature | 10.0 | 720 | > th | dose dependent | sin | 12 | NA |
| 644 | 35.34 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 9 | 23 |
| 750 | 35.47 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 22 | 14 |
| 769 | 35.49 | wind | 5.0 | 270 | < th | dose independent | rect. | 24 | 7 |
| 839 | 35.58 | radiation | 20.0 | 270 | < th | dose independent | rect. | 24 | 8 |
| 876 | 35.62 | atmosphere | 1000.0 | 30 | > th | dose independent | rect. | 22 | 14 |
| 904 | 35.64 | temperature | 10.0 | 720 | > th | dose dependent | sin | 15 | NA |
| 957 | 35.67 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 4 | 23 |
| 985 | 35.70 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 7 | 23 |
| 986 | 35.71 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 24 | 7 |
| 990 | 35.71 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 24 | 7 |