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Os10g0151800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : RNA-binding region RNP-1 (RNA recognition motif) domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.5 (0.0124) R2 : 0.121
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.208 (0.0262) R2dN8 : 0.157 R2N8 : 0.121
σ : 0.234
deviance : 25.2
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
11.16 0.157 11.5 0.411 0.332 -0.36 0.308 -0.147 0.263 2.88 79.71 1567 -- --
11.18 0.156 11.5 0.423 0.327 -0.371 0.32 -- 0.266 2.87 79.72 1579 -- --
11.46 0.158 11.5 0.395 0.332 -0.342 -- -0.27 0.258 2.76 80 1593 -- --
11.52 0.158 11.5 0.415 0.326 -0.36 -- -- 0.263 2.73 79.86 1593 -- --
13.57 0.173 11.5 0.426 -- -0.246 -- -0.123 0.258 -- 80 1593 -- --
12.69 0.167 11.5 0.413 0.361 -- 0.271 -- 0.247 2.83 -- -- -- --
12.94 0.168 11.5 0.407 0.361 -- -- -- 0.246 2.76 -- -- -- --
13.67 0.173 11.5 0.43 -- -0.246 -- -- 0.259 -- 80 1593 -- --
15.67 0.184 11.5 -- 0.319 -0.336 -- -- 0.223 2.28 82 1808 -- --
20.5 0.212 11.5 0.422 -- -- -- -- 0.255 -- -- -- -- --
17.3 0.195 11.5 -- 0.369 -- -- -- 0.2 2.77 -- -- -- --
18.55 0.201 11.5 -- -- -0.242 -- -- 0.211 -- 80 1593 -- --
25.2 0.234 11.5 -- -- -- -- -- 0.208 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 10.84 humidity 90.0 1440 > th dose dependent rect. 7 14
4 10.87 humidity 80.0 1440 < th dose independent rect. 11 2
11 10.97 precipitation 0.1 43200 > th dose dependent rect. 19 1
14 10.99 humidity 80.0 1440 < th dose independent sin 0 NA
15 10.99 humidity 80.0 1440 > th dose independent rect. 11 2
17 11.00 humidity 80.0 1440 > th dose independent sin 0 NA
25 11.01 humidity 80.0 1440 < th dose independent rect. 7 9
26 11.01 humidity 80.0 1440 < th dose independent rect. 7 11
29 11.02 humidity 80.0 270 < th dose independent sin 2 NA
32 11.02 humidity 80.0 1440 > th dose independent rect. 7 9
35 11.02 humidity 80.0 1440 > th dose independent rect. 7 11
40 11.02 humidity 80.0 1440 > th dose independent rect. 7 14
47 11.02 humidity 70.0 90 > th dose dependent rect. 6 13
77 11.04 humidity 80.0 1440 > th dose independent rect. 10 4
85 11.04 humidity 90.0 1440 > th dose dependent sin 21 NA
87 11.04 humidity 80.0 1440 > th dose dependent rect. 7 9
122 11.05 wind 3.0 43200 < th dose dependent rect. 11 1
131 11.06 wind 3.0 43200 < th dose independent rect. 11 1
165 11.07 humidity 70.0 1440 > th dose dependent rect. 11 2
210 11.09 wind 3.0 43200 > th dose independent rect. 11 1
211 11.09 precipitation 0.1 43200 > th dose independent rect. 19 1
212 11.09 wind 1.0 43200 > th dose independent rect. 24 2
236 11.09 humidity 70.0 10 > th dose dependent rect. 6 14
241 11.10 precipitation 0.1 43200 < th dose independent rect. 19 1
255 11.10 precipitation 0.1 43200 < th dose dependent rect. 19 1
271 11.11 wind 1.0 43200 < th dose independent rect. 24 2
285 11.11 temperature 30.0 43200 > th dose dependent rect. 12 1
295 11.12 wind 3.0 14400 < th dose independent rect. 3 1
297 11.12 precipitation 0.1 14400 > th dose independent rect. 16 3
298 11.12 precipitation 0.1 14400 < th dose independent rect. 16 3
300 11.12 precipitation 0.1 14400 > th dose independent rect. 13 6
301 11.12 precipitation 0.1 14400 < th dose independent rect. 13 6
323 11.12 precipitation 0.1 14400 < th dose dependent rect. 16 3
324 11.12 precipitation 0.1 14400 < th dose dependent rect. 13 6
335 11.13 precipitation 0.1 14400 > th dose independent rect. 16 1
336 11.13 precipitation 0.1 14400 < th dose independent rect. 16 1
346 11.13 temperature 30.0 43200 < th dose independent rect. 20 13
359 11.13 precipitation 0.1 14400 < th dose dependent rect. 16 1
374 11.14 temperature 30.0 43200 < th dose independent rect. 7 2
375 11.14 temperature 30.0 43200 < th dose independent rect. 5 4
376 11.14 temperature 30.0 43200 < th dose independent rect. 3 6
379 11.14 temperature 30.0 43200 < th dose independent rect. 24 9
381 11.14 precipitation 0.1 14400 > th dose independent rect. 11 10
382 11.14 precipitation 0.1 14400 < th dose independent rect. 11 10
403 11.14 temperature 30.0 43200 > th dose dependent rect. 9 1
404 11.14 humidity 80.0 43200 < th dose dependent rect. 23 1
405 11.14 precipitation 0.1 14400 > th dose dependent rect. 16 1
428 11.14 precipitation 0.1 14400 < th dose dependent rect. 11 10
455 11.15 temperature 30.0 43200 > th dose independent rect. 8 1
504 11.15 temperature 30.0 43200 > th dose dependent sin 7 NA
560 11.16 wind 3.0 14400 > th dose independent rect. 3 1
587 11.16 temperature 30.0 43200 > th dose dependent sin 4 NA
650 11.17 humidity 80.0 270 < th dose independent rect. 21 18
660 11.17 temperature 30.0 43200 > th dose dependent sin 2 NA
671 11.17 precipitation 0.1 4320 > th dose dependent rect. 13 4
733 11.18 humidity 80.0 270 < th dose independent rect. 7 8
755 11.18 temperature 30.0 43200 > th dose dependent sin 23 NA
760 11.18 wind 3.0 43200 < th dose dependent rect. 9 3
766 11.18 precipitation 0.1 4320 > th dose dependent rect. 11 6
846 11.19 humidity 80.0 270 > th dose independent rect. 4 14
858 11.19 humidity 80.0 1440 < th dose independent rect. 19 23
861 11.19 temperature 30.0 43200 > th dose dependent sin 21 NA
863 11.19 temperature 30.0 43200 > th dose dependent no NA NA