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Os07g0187300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : RNA-binding region RNP-1 (RNA recognition motif) domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.4 (0.0118) R2 : 0.72
β1 : 0.727 (0.0433) R2dD : 0.179 R2D : 0.165
β2 : 0.902 (0.0301) R2dC : 0.554 R2C : 0.539
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.00562 (0.0253) R2dN8 : 4.08e-05 R2N8 : 0.000734
σ : 0.222
deviance : 22.56
__
_____
C
peak time of C : 16
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
18.53 0.202 12.4 0.72 0.616 -0.507 0.181 0.43 -0.0279 18.4 11.63 150 -- --
19.33 0.205 12.4 0.713 0.564 -0.605 0.325 -- -0.0357 19.3 10.77 177 -- --
18.59 0.201 12.4 0.715 0.606 -0.523 -- 0.432 -0.0258 18.5 11.57 159 -- --
19.52 0.206 12.4 0.716 0.597 -0.507 -- -- -0.0247 18.4 11.17 163 -- --
22.35 0.22 12.4 0.667 -- -0.891 -- 0.26 -0.0479 -- 2.338 502 -- --
22.41 0.222 12.4 0.73 0.903 -- -0.225 -- -0.00436 15.9 -- -- -- --
22.56 0.222 12.4 0.727 0.902 -- -- -- -0.00562 16 -- -- -- --
22.48 0.221 12.4 0.656 -- -0.896 -- -- -0.0431 -- 1 514 -- --
32.64 0.266 12.4 -- 0.561 -0.538 -- -- -0.114 18.5 14.68 179 -- --
67.06 0.383 12.4 0.69 -- -- -- -- -0.0297 -- -- -- -- --
36.47 0.282 12.4 -- 0.888 -- -- -- -0.0865 16 -- -- -- --
33.71 0.27 12.4 -- -- -0.922 -- -- -0.104 -- 0.192 527 -- --
79.6 0.416 12.4 -- -- -- -- -- -0.106 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 14.98 radiation 40.0 270 < th dose dependent rect. 15 15
3 15.24 radiation 20.0 270 < th dose independent rect. 15 15
12 16.01 wind 9.0 270 < th dose independent rect. 6 10
13 16.01 radiation 1.0 270 < th dose independent rect. 2 17
14 16.04 radiation 1.0 270 < th dose independent rect. 1 19
16 16.12 radiation 1.0 270 < th dose dependent rect. 2 17
17 16.14 temperature 10.0 270 > th dose independent rect. 6 10
18 16.14 atmosphere 1015.0 270 < th dose independent rect. 6 10
19 16.14 temperature 10.0 270 > th dose independent rect. 16 14
22 16.17 precipitation 0.1 270 < th dose independent rect. 6 10
23 16.17 precipitation 0.1 270 < th dose dependent rect. 6 10
25 16.21 atmosphere 995.0 270 > th dose independent rect. 16 14
30 16.27 radiation 1.0 270 < th dose dependent rect. 1 19
38 16.37 radiation 1.0 270 > th dose independent rect. 6 10
46 16.41 wind 9.0 270 < th dose independent rect. 16 14
52 16.51 radiation 1.0 270 > th dose independent sin 2 NA
55 16.54 humidity 50.0 270 > th dose independent rect. 16 14
58 16.56 radiation 1.0 270 < th dose independent rect. 24 21
65 16.60 atmosphere 995.0 270 > th dose independent rect. 6 9
66 16.60 atmosphere 1010.0 270 < th dose independent rect. 15 15
73 16.67 temperature 15.0 270 > th dose independent rect. 1 19
85 16.79 temperature 15.0 90 > th dose independent rect. 4 17
90 16.80 radiation 10.0 90 < th dose dependent rect. 4 18
92 16.84 humidity 50.0 270 > th dose independent rect. 6 9
95 16.85 atmosphere 1010.0 270 < th dose independent rect. 11 10
100 16.87 atmosphere 995.0 270 > th dose independent rect. 1 19
109 16.94 radiation 1.0 270 > th dose independent rect. 17 22
110 16.95 atmosphere 995.0 90 > th dose independent rect. 4 17
118 17.01 radiation 1.0 90 > th dose independent rect. 8 10
121 17.02 radiation 10.0 10 < th dose independent rect. 4 18
122 17.02 radiation 30.0 270 < th dose dependent rect. 1 8
138 17.06 humidity 50.0 270 > th dose independent rect. 1 19
139 17.07 temperature 30.0 270 < th dose dependent rect. 21 4
146 17.08 precipitation 0.1 270 < th dose independent rect. 16 14
156 17.08 precipitation 0.1 270 < th dose dependent rect. 16 14
160 17.09 radiation 1.0 270 < th dose independent sin 2 NA
166 17.11 wind 9.0 270 < th dose independent rect. 20 5
167 17.11 temperature 10.0 270 > th dose independent rect. 20 5
168 17.11 temperature 30.0 270 < th dose independent rect. 20 5
169 17.11 humidity 50.0 270 > th dose independent rect. 20 5
172 17.11 atmosphere 995.0 270 > th dose independent rect. 20 5
173 17.11 radiation 1.0 270 < th dose independent rect. 20 5
178 17.11 precipitation 0.1 270 < th dose independent rect. 20 5
179 17.11 temperature 15.0 270 > th dose independent rect. 11 10
182 17.11 atmosphere 1015.0 270 < th dose independent rect. 1 19
184 17.11 radiation 1.0 270 < th dose dependent rect. 20 5
189 17.11 precipitation 0.1 270 < th dose dependent rect. 20 5
190 17.11 temperature 30.0 90 < th dose dependent rect. 21 7
192 17.12 radiation 1.0 270 < th dose dependent sin 2 NA
199 17.14 precipitation 0.1 270 < th dose independent rect. 6 20
201 17.14 precipitation 0.1 270 < th dose dependent rect. 6 20
205 17.17 radiation 1.0 90 > th dose independent sin 23 NA
212 17.18 temperature 10.0 90 > th dose independent rect. 21 7
213 17.18 temperature 30.0 90 < th dose independent rect. 21 7
214 17.18 humidity 50.0 90 > th dose independent rect. 21 7
217 17.18 atmosphere 995.0 90 > th dose independent rect. 21 7
218 17.18 radiation 1.0 90 < th dose independent rect. 21 7
223 17.18 precipitation 0.1 90 < th dose independent rect. 21 7
227 17.18 atmosphere 1015.0 90 < th dose independent rect. 4 17
229 17.18 temperature 30.0 10 < th dose dependent rect. 22 6
230 17.18 radiation 1.0 90 < th dose dependent rect. 21 7
235 17.18 precipitation 0.1 90 < th dose dependent rect. 21 7
238 17.19 wind 9.0 90 < th dose independent rect. 21 7
240 17.19 wind 7.0 270 < th dose independent rect. 6 20
243 17.19 radiation 10.0 10 < th dose dependent rect. 5 17
244 17.20 wind 1.0 270 > th dose independent rect. 6 9
248 17.21 radiation 10.0 270 < th dose independent rect. 1 7
252 17.22 precipitation 0.1 270 < th dose independent rect. 7 18
253 17.22 precipitation 0.1 270 < th dose dependent rect. 7 18
287 17.25 wind 7.0 270 < th dose independent rect. 7 18
306 17.26 precipitation 0.1 270 < th dose independent rect. 5 22
310 17.26 precipitation 0.1 270 < th dose dependent rect. 5 22
325 17.29 humidity 50.0 270 > th dose dependent rect. 20 5
341 17.30 wind 9.0 270 < th dose dependent rect. 20 5
351 17.32 atmosphere 995.0 270 > th dose independent rect. 11 9
352 17.32 atmosphere 995.0 10 > th dose independent rect. 4 18
383 17.36 humidity 50.0 270 > th dose independent rect. 2 17
394 17.37 wind 9.0 270 < th dose independent rect. 5 22
395 17.37 temperature 10.0 270 > th dose dependent rect. 2 4
399 17.38 wind 9.0 90 < th dose independent rect. 4 17
412 17.39 wind 9.0 270 < th dose independent rect. 1 19
419 17.41 temperature 30.0 270 < th dose dependent rect. 23 1
425 17.42 wind 1.0 270 > th dose independent rect. 11 9
456 17.45 temperature 10.0 270 > th dose independent rect. 20 15
457 17.45 atmosphere 995.0 270 > th dose independent rect. 20 15
467 17.47 wind 7.0 270 < th dose independent rect. 2 4
476 17.47 humidity 50.0 270 > th dose independent rect. 20 15
486 17.47 humidity 50.0 270 > th dose dependent rect. 2 4
500 17.48 wind 9.0 270 < th dose independent rect. 20 15
503 17.48 humidity 50.0 270 > th dose dependent rect. 1 6
504 17.48 humidity 50.0 90 > th dose dependent rect. 21 7
512 17.49 temperature 10.0 270 > th dose independent rect. 2 4
514 17.49 temperature 30.0 270 < th dose independent rect. 2 4
515 17.49 humidity 50.0 270 > th dose independent rect. 2 4
518 17.49 atmosphere 995.0 270 > th dose independent rect. 2 4
519 17.49 atmosphere 1015.0 270 < th dose independent rect. 2 4
520 17.49 radiation 20.0 270 < th dose independent rect. 2 4
526 17.49 temperature 10.0 270 > th dose independent rect. 6 20
527 17.49 wind 9.0 270 < th dose dependent rect. 2 4
528 17.49 humidity 50.0 270 > th dose dependent rect. 1 8
531 17.50 precipitation 0.1 270 < th dose independent rect. 2 4
532 17.50 atmosphere 1010.0 270 < th dose independent rect. 1 6
540 17.50 radiation 40.0 270 < th dose dependent rect. 2 4
541 17.50 precipitation 0.1 270 < th dose dependent rect. 2 4
557 17.52 precipitation 0.1 270 < th dose independent rect. 20 15
565 17.52 precipitation 0.1 270 < th dose dependent rect. 20 15
566 17.52 humidity 50.0 90 > th dose dependent rect. 4 17
568 17.53 temperature 30.0 270 < th dose independent rect. 15 15
569 17.53 precipitation 0.1 270 < th dose independent rect. 1 19
575 17.53 precipitation 0.1 270 < th dose dependent rect. 1 19
577 17.54 wind 7.0 270 < th dose independent rect. 1 6
578 17.54 humidity 70.0 270 > th dose independent rect. 1 6
599 17.55 humidity 50.0 270 > th dose dependent rect. 1 19
604 17.56 wind 9.0 10 < th dose independent rect. 22 6
606 17.56 temperature 10.0 10 > th dose independent rect. 22 6
608 17.56 temperature 30.0 10 < th dose independent rect. 22 6
610 17.56 humidity 50.0 10 > th dose independent rect. 22 6
616 17.56 atmosphere 995.0 10 > th dose independent rect. 22 6
619 17.56 radiation 1.0 10 < th dose independent rect. 22 6
630 17.56 temperature 10.0 10 > th dose independent rect. 4 18
634 17.56 atmosphere 1015.0 10 < th dose independent rect. 4 18
637 17.56 radiation 1.0 10 < th dose dependent rect. 22 6
652 17.57 temperature 10.0 270 > th dose independent rect. 1 6
654 17.57 temperature 30.0 270 < th dose independent rect. 1 6
655 17.57 humidity 50.0 270 > th dose independent rect. 1 6
657 17.57 atmosphere 995.0 270 > th dose independent rect. 1 6
660 17.57 precipitation 0.1 270 < th dose independent rect. 1 6
664 17.57 temperature 15.0 10 > th dose independent rect. 16 16
667 17.57 temperature 10.0 270 > th dose independent rect. 7 18
672 17.57 precipitation 0.1 270 < th dose dependent rect. 1 6
683 17.58 atmosphere 1010.0 270 < th dose independent rect. 13 8
687 17.58 temperature 10.0 270 > th dose dependent rect. 1 6
694 17.59 radiation 1.0 10 > th dose independent rect. 8 8
695 17.59 atmosphere 995.0 10 > th dose independent rect. 16 16
767 17.64 precipitation 0.1 10 < th dose independent rect. 4 18
771 17.64 precipitation 0.1 10 < th dose dependent rect. 4 18
772 17.65 radiation 1.0 90 < th dose independent sin 23 NA
783 17.65 wind 9.0 270 < th dose dependent rect. 1 6
784 17.65 radiation 40.0 4320 < th dose dependent rect. 22 7
794 17.66 humidity 50.0 270 > th dose dependent rect. 3 2
804 17.67 wind 9.0 90 < th dose dependent rect. 21 7
840 17.69 wind 7.0 270 < th dose independent rect. 3 2
842 17.69 temperature 10.0 270 > th dose independent rect. 3 2
844 17.69 temperature 30.0 270 < th dose independent rect. 3 2
845 17.69 humidity 50.0 270 > th dose independent rect. 3 2
848 17.69 atmosphere 995.0 270 > th dose independent rect. 3 2
849 17.69 atmosphere 1010.0 270 < th dose independent rect. 3 2
851 17.69 radiation 20.0 270 < th dose independent rect. 3 2
864 17.69 atmosphere 1015.0 10 < th dose independent rect. 16 16
868 17.69 temperature 10.0 270 > th dose independent rect. 5 22
869 17.69 radiation 20.0 270 < th dose dependent rect. 3 2
873 17.69 humidity 50.0 10 > th dose dependent rect. 22 6
877 17.70 radiation 1.0 270 < th dose independent rect. 3 2
939 17.73 atmosphere 995.0 270 > th dose independent rect. 13 7
961 17.74 precipitation 0.1 270 < th dose independent rect. 3 2
984 17.74 precipitation 0.1 30 < th dose independent rect. 8 20
985 17.74 temperature 10.0 270 > th dose dependent rect. 3 2
986 17.74 precipitation 0.1 270 < th dose dependent rect. 3 2
998 17.74 precipitation 0.1 30 < th dose dependent rect. 8 20