Os03g0670700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Glycine-rich RNA-binding, abscisic acid-inducible protein.
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Os03g0670700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Glycine-rich RNA-binding, abscisic acid-inducible protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 54.94 | 0.348 | 16.4 | 0.441 | 1.28 | 0.763 | -0.079 | -0.324 | -1.11 | 19.5 | 92.96 | 67 | -- | -- |
| 55.06 | 0.346 | 16.4 | 0.442 | 1.28 | 0.742 | -0.0331 | -- | -1.11 | 19.5 | 92.89 | 76 | -- | -- |
| 54.93 | 0.345 | 16.4 | 0.442 | 1.28 | 0.808 | -- | -0.327 | -1.12 | 19.6 | 93.27 | 68 | -- | -- |
| 55.05 | 0.346 | 16.4 | 0.444 | 1.28 | 0.79 | -- | -- | -1.12 | 19.6 | 93.29 | 68 | -- | -- |
| 133.4 | 0.538 | 16.4 | 0.533 | -- | -0.129 | -- | 0.889 | -1.23 | -- | 97 | 1022 | -- | -- |
| 63.87 | 0.375 | 16.4 | 0.498 | 1.13 | -- | -0.21 | -- | -1.21 | 20.2 | -- | -- | -- | -- |
| 64 | 0.375 | 16.4 | 0.504 | 1.13 | -- | -- | -- | -1.21 | 20.2 | -- | -- | -- | -- |
| 95.27 | 0.455 | 16.4 | 0.518 | -- | -1.13 | -- | -- | -1.3 | -- | 68 | 663 | -- | -- |
| 60.15 | 0.361 | 16.4 | -- | 1.3 | 0.8 | -- | -- | -1.15 | 19.5 | 92.88 | 66 | -- | -- |
| 134.31 | 0.542 | 16.3 | 0.495 | -- | -- | -- | -- | -1.22 | -- | -- | -- | -- | -- |
| 70.69 | 0.393 | 16.4 | -- | 1.13 | -- | -- | -- | -1.26 | 20.2 | -- | -- | -- | -- |
| 101.69 | 0.47 | 16.4 | -- | -- | -1.14 | -- | -- | -1.35 | -- | 67.02 | 673 | -- | -- |
| 140.77 | 0.554 | 16.4 | -- | -- | -- | -- | -- | -1.28 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 50.10 | temperature | 25 | 270 | < th | dose independent | rect. | 23 | 6 |
| 4 | 50.97 | temperature | 25 | 90 | < th | dose independent | rect. | 1 | 6 |
| 6 | 51.07 | temperature | 25 | 270 | < th | dose independent | rect. | 1 | 1 |
| 13 | 51.71 | atmosphere | 1005 | 270 | > th | dose dependent | rect. | 12 | 7 |
| 33 | 52.76 | atmosphere | 1005 | 10 | > th | dose dependent | rect. | 14 | 5 |
| 35 | 52.81 | temperature | 25 | 30 | < th | dose independent | rect. | 3 | 3 |
| 41 | 52.88 | humidity | 90 | 10 | > th | dose independent | rect. | 3 | 5 |
| 44 | 52.95 | atmosphere | 1005 | 270 | > th | dose independent | rect. | 11 | 8 |
| 47 | 52.99 | humidity | 90 | 10 | > th | dose independent | rect. | 3 | 3 |
| 52 | 53.07 | humidity | 90 | 90 | > th | dose dependent | rect. | 1 | 6 |
| 57 | 53.18 | atmosphere | 1005 | 270 | > th | dose independent | rect. | 12 | 5 |
| 59 | 53.20 | humidity | 90 | 90 | > th | dose dependent | rect. | 1 | 8 |
| 71 | 53.25 | humidity | 90 | 90 | > th | dose dependent | rect. | 1 | 13 |
| 72 | 53.27 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 14 | 16 |
| 76 | 53.28 | temperature | 30 | 720 | > th | dose independent | rect. | 10 | 4 |
| 81 | 53.33 | humidity | 90 | 10 | > th | dose dependent | rect. | 3 | 11 |
| 87 | 53.37 | humidity | 90 | 90 | > th | dose dependent | rect. | 3 | 2 |
| 88 | 53.37 | humidity | 90 | 10 | > th | dose dependent | rect. | 3 | 9 |
| 94 | 53.43 | humidity | 90 | 10 | > th | dose dependent | rect. | 3 | 7 |
| 98 | 53.44 | humidity | 90 | 10 | > th | dose dependent | rect. | 3 | 5 |
| 103 | 53.48 | humidity | 90 | 10 | < th | dose independent | rect. | 4 | 10 |
| 104 | 53.48 | humidity | 90 | 270 | > th | dose dependent | rect. | 1 | 3 |
| 110 | 53.51 | temperature | 25 | 90 | < th | dose independent | sin | 9 | NA |
| 124 | 53.60 | humidity | 90 | 90 | > th | dose dependent | sin | 6 | NA |
| 127 | 53.61 | humidity | 90 | 10 | > th | dose dependent | rect. | 3 | 3 |
| 258 | 53.86 | humidity | 90 | 90 | > th | dose independent | rect. | 1 | 6 |
| 264 | 53.90 | atmosphere | 1005 | 30 | > th | dose dependent | rect. | 14 | 3 |
| 292 | 54.10 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 12 | 18 |
| 305 | 54.16 | humidity | 90 | 90 | > th | dose independent | rect. | 1 | 8 |
| 325 | 54.24 | atmosphere | 1000 | 10 | > th | dose dependent | rect. | 12 | 9 |
| 345 | 54.32 | atmosphere | 1000 | 10 | > th | dose dependent | rect. | 12 | 7 |
| 364 | 54.41 | temperature | 25 | 90 | > th | dose independent | sin | 9 | NA |
| 401 | 54.54 | temperature | 25 | 90 | < th | dose independent | rect. | 19 | 12 |
| 409 | 54.59 | humidity | 90 | 270 | > th | dose independent | rect. | 1 | 1 |
| 412 | 54.60 | atmosphere | 1005 | 270 | > th | dose dependent | rect. | 14 | 1 |
| 424 | 54.65 | temperature | 30 | 270 | > th | dose independent | rect. | 16 | 22 |
| 436 | 54.69 | humidity | 90 | 10 | < th | dose independent | rect. | 4 | 8 |
| 438 | 54.71 | temperature | 25 | 270 | > th | dose independent | rect. | 18 | 14 |
| 452 | 54.78 | atmosphere | 1005 | 30 | > th | dose independent | rect. | 14 | 3 |
| 467 | 54.83 | humidity | 90 | 90 | > th | dose independent | rect. | 1 | 13 |
| 475 | 54.85 | temperature | 25 | 270 | > th | dose independent | rect. | 24 | 8 |
| 480 | 54.86 | humidity | 50 | 10 | > th | dose dependent | rect. | 1 | 16 |
| 490 | 54.88 | humidity | 50 | 10 | > th | dose dependent | rect. | 3 | 14 |
| 501 | 54.94 | radiation | 30 | 270 | > th | dose independent | rect. | 14 | 1 |
| 533 | 55.06 | humidity | 90 | 10 | > th | dose independent | sin | 4 | NA |
| 561 | 55.13 | temperature | 30 | 30 | < th | dose independent | rect. | 14 | 16 |
| 596 | 55.25 | humidity | 60 | 270 | > th | dose independent | rect. | 24 | 17 |
| 598 | 55.26 | humidity | 90 | 90 | > th | dose independent | sin | 6 | NA |
| 618 | 55.30 | temperature | 10 | 270 | > th | dose dependent | rect. | 17 | 7 |
| 623 | 55.33 | temperature | 30 | 30 | < th | dose independent | rect. | 12 | 7 |
| 637 | 55.36 | humidity | 90 | 10 | > th | dose independent | rect. | 24 | 8 |
| 663 | 55.41 | humidity | 60 | 270 | > th | dose independent | rect. | 11 | 6 |
| 675 | 55.42 | atmosphere | 995 | 10 | > th | dose dependent | rect. | 14 | 16 |
| 682 | 55.43 | temperature | 30 | 30 | < th | dose independent | rect. | 12 | 18 |
| 690 | 55.44 | wind | 3 | 10 | < th | dose dependent | rect. | 3 | 3 |
| 750 | 55.53 | wind | 1 | 30 | > th | dose independent | rect. | 17 | 23 |
| 758 | 55.56 | temperature | 25 | 270 | > th | dose independent | rect. | 22 | 10 |
| 774 | 55.58 | humidity | 90 | 270 | > th | dose dependent | rect. | 11 | 18 |
| 787 | 55.61 | humidity | 90 | 10 | < th | dose independent | sin | 4 | NA |
| 839 | 55.66 | temperature | 30 | 30 | < th | dose independent | rect. | 14 | 3 |
| 849 | 55.67 | temperature | 30 | 10 | < th | dose dependent | rect. | 16 | 1 |
| 881 | 55.70 | temperature | 30 | 270 | < th | dose independent | rect. | 24 | 17 |
| 911 | 55.73 | radiation | 10 | 10 | < th | dose dependent | rect. | 16 | 1 |
| 916 | 55.74 | temperature | 30 | 270 | < th | dose independent | rect. | 11 | 6 |
| 948 | 55.79 | temperature | 30 | 10 | < th | dose independent | rect. | 16 | 1 |
| 964 | 55.81 | wind | 1 | 30 | > th | dose independent | rect. | 4 | 10 |
| 965 | 55.81 | atmosphere | 995 | 30 | > th | dose independent | rect. | 3 | 14 |