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Os08g0192900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : RNA-binding region RNP-1 (RNA recognition motif) domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.9 (0.0254) R2 : 0.7
β1 : 0.923 (0.0928) R2dD : 0.0665 R2D : 0.0368
β2 : 1.13 (0.0811) R2dC : 0.201 R2C : 0.427
β3 : -1.31 (0.0928) R2dE : 0.208 R2E : 0.426
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.341 (0.0546) R2dN8 : 0.0347 R2N8 : -0.0114
σ : 0.474
deviance : 103.51
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_____
C
peak time of C : 16.4
E
wheather : wind
threshold : 4.601
memory length : 219
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 3.04
open length of G : 4.38

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
101.88 0.474 11.9 0.894 1.15 -1.34 0.657 -0.301 0.343 16.4 4.658 256 3.02 4.04
101.94 0.47 11.9 0.893 1.15 -1.34 0.738 -- 0.351 16.4 4.6 250 3.02 4.05
102.86 0.472 11.9 0.879 1.14 -1.35 -- -0.416 0.35 16.3 4.613 255 2.93 4.17
103.51 0.474 11.9 0.923 1.13 -1.31 -- -- 0.341 16.4 4.601 219 3.04 4.38
135.4 0.542 12 0.933 -- -1.68 -- -0.668 0.341 -- 5.493 119 2.8 5.6
133.4 0.541 12 0.877 1.91 -- 0.925 -- 0.234 17.3 -- -- -- --
135.53 0.545 12 0.875 1.91 -- -- -- 0.238 17.3 -- -- -- --
129.44 0.53 11.9 0.734 -- -1.71 -- -- 0.298 -- 17.89 286 0.567 6.45
125.56 0.522 11.9 -- 1.13 -1.3 -- -- 0.259 16.3 4.699 228 3 4.38
326.43 0.844 12 0.81 -- -- -- -- 0.191 -- -- -- -- --
155.71 0.584 12 -- 1.9 -- -- -- 0.141 17.4 -- -- -- --
149.78 0.57 11.9 -- -- -1.74 -- -- 0.259 -- 19.97 290 0.482 6.74
343.72 0.865 12 -- -- -- -- -- 0.101 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 102.34 wind 5.0 270 < th dose independent rect. 3 4
3 103.34 wind 9.0 270 < th dose independent rect. 7 20
4 103.43 precipitation 0.1 270 < th dose independent rect. 3 4
5 103.43 precipitation 0.1 270 < th dose dependent rect. 3 4
8 103.78 radiation 30.0 270 < th dose dependent rect. 3 4
11 104.05 radiation 20.0 270 < th dose independent rect. 3 4
13 104.08 temperature 10.0 270 > th dose independent rect. 3 4
15 104.08 temperature 30.0 270 < th dose independent rect. 3 4
16 104.08 humidity 50.0 270 > th dose independent rect. 3 4
19 104.08 atmosphere 995.0 270 > th dose independent rect. 3 4
20 104.08 atmosphere 1015.0 270 < th dose independent rect. 3 4
23 104.08 temperature 10.0 270 > th dose independent rect. 7 20
30 104.48 radiation 20.0 270 < th dose independent rect. 2 6
36 104.94 wind 9.0 270 < th dose dependent rect. 3 4
37 104.95 humidity 50.0 270 > th dose independent rect. 7 20
69 105.52 precipitation 0.1 270 < th dose independent rect. 7 20
70 105.52 precipitation 0.1 270 < th dose dependent rect. 7 20
108 105.97 temperature 10.0 1440 > th dose independent rect. 5 5
111 105.97 atmosphere 995.0 1440 > th dose independent rect. 5 5
112 105.97 atmosphere 1015.0 1440 < th dose independent rect. 5 5
113 105.97 temperature 10.0 1440 > th dose independent rect. 10 19
132 106.01 temperature 15.0 90 > th dose independent rect. 15 17
138 106.07 temperature 10.0 30 > th dose independent rect. 4 5
143 106.07 atmosphere 995.0 30 > th dose independent rect. 4 5
144 106.07 atmosphere 1015.0 30 < th dose independent rect. 4 5
145 106.07 temperature 10.0 30 > th dose independent rect. 9 19
164 106.21 temperature 10.0 10 > th dose dependent rect. 9 6
166 106.25 radiation 1.0 270 < th dose dependent rect. 4 1
168 106.27 wind 1.0 270 > th dose independent rect. 3 4
186 106.32 precipitation 0.1 90 < th dose independent rect. 8 7
187 106.32 precipitation 0.1 90 < th dose dependent rect. 8 7
204 106.36 temperature 10.0 270 > th dose dependent rect. 3 4
208 106.43 temperature 15.0 10 > th dose independent rect. 15 18
211 106.46 precipitation 0.1 270 < th dose independent rect. 3 15
212 106.46 precipitation 0.1 270 < th dose dependent rect. 3 15
216 106.52 wind 9.0 90 < th dose independent rect. 8 7
223 106.55 atmosphere 995.0 270 > th dose independent rect. 7 20
226 106.56 temperature 15.0 90 > th dose independent rect. 8 7
230 106.58 atmosphere 1015.0 90 < th dose independent rect. 8 7
234 106.61 precipitation 0.1 30 < th dose independent rect. 9 19
235 106.61 precipitation 0.1 30 < th dose dependent rect. 9 19
236 106.62 atmosphere 1000.0 270 > th dose independent rect. 19 8
239 106.67 radiation 1.0 270 < th dose independent rect. 18 9
242 106.68 atmosphere 995.0 90 > th dose independent rect. 8 7
244 106.68 radiation 20.0 270 < th dose dependent rect. 17 10
256 106.71 atmosphere 995.0 30 > th dose independent rect. 9 19
258 106.73 radiation 1.0 270 < th dose dependent rect. 18 9
268 106.81 precipitation 0.1 90 < th dose independent rect. 15 17
269 106.81 precipitation 0.1 90 < th dose dependent rect. 15 17
272 106.84 humidity 50.0 270 > th dose dependent rect. 3 4
274 106.86 radiation 40.0 90 < th dose independent rect. 15 17
278 106.92 radiation 1.0 10 > th dose independent rect. 9 6
292 107.01 humidity 50.0 270 > th dose dependent rect. 18 9
297 107.06 wind 9.0 270 < th dose independent rect. 18 9
300 107.09 temperature 10.0 270 > th dose independent rect. 18 9
301 107.09 humidity 50.0 270 > th dose independent rect. 18 9
306 107.09 temperature 10.0 270 > th dose independent rect. 3 15
307 107.09 atmosphere 1015.0 270 < th dose independent rect. 3 15
314 107.14 temperature 10.0 10 > th dose independent rect. 9 6
316 107.14 atmosphere 995.0 10 > th dose independent rect. 9 6
317 107.14 atmosphere 1015.0 10 < th dose independent rect. 9 6
318 107.14 precipitation 0.1 10 < th dose independent rect. 9 6
321 107.14 precipitation 0.1 10 < th dose dependent rect. 9 6
323 107.18 wind 9.0 10 < th dose independent rect. 9 6
327 107.21 radiation 1.0 90 > th dose independent rect. 8 7
329 107.24 wind 9.0 90 < th dose independent rect. 15 17
361 107.43 humidity 50.0 30 > th dose independent rect. 9 19
364 107.48 temperature 10.0 270 > th dose dependent rect. 4 2
365 107.49 atmosphere 1000.0 90 > th dose dependent rect. 4 4
367 107.50 radiation 1.0 30 > th dose independent rect. 18 15
369 107.51 temperature 10.0 1440 > th dose independent rect. 10 6
372 107.51 temperature 10.0 1440 > th dose independent rect. 16 18
397 107.63 temperature 30.0 270 < th dose independent rect. 18 9
398 107.63 precipitation 0.1 10 < th dose independent rect. 15 18
399 107.63 precipitation 0.1 10 < th dose dependent rect. 15 18
405 107.72 wind 1.0 90 > th dose independent rect. 8 7
406 107.72 humidity 50.0 270 > th dose independent rect. 7 7
423 107.80 humidity 50.0 270 > th dose dependent rect. 4 1
454 107.95 radiation 1.0 30 > th dose independent rect. 5 4
467 107.96 humidity 90.0 90 < th dose independent rect. 8 7
469 107.96 temperature 10.0 270 > th dose dependent rect. 8 4
470 107.96 atmosphere 1000.0 10 > th dose dependent rect. 4 5
476 107.99 humidity 90.0 10 < th dose independent rect. 9 6
497 108.04 wind 9.0 270 < th dose dependent rect. 7 6
506 108.08 atmosphere 1015.0 10 < th dose independent rect. 15 18
514 108.11 radiation 1.0 90 < th dose dependent sin 12 NA
518 108.13 atmosphere 1000.0 270 > th dose dependent rect. 4 1
524 108.18 atmosphere 1015.0 90 < th dose independent rect. 15 17
526 108.19 atmosphere 995.0 90 > th dose independent rect. 15 17
538 108.22 precipitation 0.1 270 < th dose independent rect. 18 9
539 108.22 precipitation 0.1 270 < th dose dependent rect. 18 9
561 108.33 wind 1.0 30 > th dose independent rect. 4 5
590 108.41 radiation 1.0 90 > th dose independent rect. 15 17
608 108.48 humidity 90.0 10 < th dose independent rect. 4 5
610 108.49 wind 9.0 270 < th dose independent rect. 3 15
613 108.51 humidity 90.0 10 < th dose independent rect. 2 7
616 108.55 temperature 10.0 270 > th dose dependent rect. 9 1
625 108.60 atmosphere 995.0 10 > th dose independent rect. 15 18
642 108.72 radiation 1.0 90 > th dose independent sin 12 NA
648 108.74 wind 1.0 270 > th dose independent rect. 13 18
727 108.95 temperature 30.0 270 < th dose dependent rect. 4 1
755 109.04 radiation 40.0 90 < th dose independent rect. 4 15
757 109.05 radiation 1.0 90 < th dose independent sin 12 NA
773 109.08 wind 9.0 270 < th dose dependent rect. 7 19
823 109.29 radiation 1.0 270 > th dose independent rect. 9 1
859 109.40 radiation 1.0 270 < th dose independent rect. 3 9
888 109.49 temperature 15.0 270 > th dose independent rect. 9 1
926 109.62 radiation 1.0 270 < th dose dependent rect. 13 14
932 109.64 radiation 40.0 10 < th dose independent rect. 5 15
953 109.69 wind 9.0 1440 < th dose independent rect. 5 4
957 109.69 humidity 50.0 1440 > th dose independent rect. 5 4
965 109.70 humidity 50.0 270 > th dose independent rect. 9 1
978 109.73 precipitation 0.1 270 < th dose independent rect. 9 1
982 109.73 precipitation 0.1 270 < th dose dependent rect. 9 1
983 109.74 wind 9.0 270 < th dose independent rect. 9 1
999 109.81 atmosphere 995.0 270 > th dose independent rect. 9 1
1000 109.81 atmosphere 1015.0 270 < th dose independent rect. 9 1