Os01g0938200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to RNA-binding protein BRUNOL5 (Fragment).
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Os01g0938200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to RNA-binding protein BRUNOL5 (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 79.81 | 0.42 | 7.38 | -1.02 | 1.02 | 1.77 | -0.986 | 1.47 | 0.428 | 1.35 | 12.43 | 2021 | -- | -- |
| 80.3 | 0.417 | 7.42 | -1.34 | 1.05 | 1.6 | -0.893 | -- | 0.346 | 1.32 | 17.7 | 1957 | -- | -- |
| 83.54 | 0.426 | 7.38 | -0.997 | 1.06 | 1.77 | -- | 1.4 | 0.43 | 1.14 | 12.06 | 1902 | -- | -- |
| 83.76 | 0.426 | 7.42 | -1.29 | 1.07 | 1.58 | -- | -- | 0.345 | 1.16 | 17.7 | 1904 | -- | -- |
| 125.46 | 0.522 | 7.39 | -1.08 | -- | 2.21 | -- | 0.912 | 0.372 | -- | 16.21 | 1004 | -- | -- |
| 136.34 | 0.547 | 7.35 | -0.752 | 1.11 | -- | -0.801 | -- | 0.679 | 0.833 | -- | -- | -- | -- |
| 138.97 | 0.552 | 7.35 | -0.722 | 1.11 | -- | -- | -- | 0.684 | 0.7 | -- | -- | -- | -- |
| 124.77 | 0.52 | 7.42 | -1.34 | -- | 2.11 | -- | -- | 0.316 | -- | 16.9 | 987 | -- | -- |
| 119.71 | 0.51 | 7.37 | -- | 1.07 | 1.01 | -- | -- | 0.579 | 0.995 | 20.9 | 1851 | -- | -- |
| 216.62 | 0.688 | 7.33 | -0.682 | -- | -- | -- | -- | 0.704 | -- | -- | -- | -- | -- |
| 152.71 | 0.578 | 7.33 | -- | 1.1 | -- | -- | -- | 0.765 | 0.669 | -- | -- | -- | -- |
| 165.34 | 0.599 | 7.37 | -- | -- | 1.46 | -- | -- | 0.534 | -- | 19.84 | 992 | -- | -- |
| 228.89 | 0.706 | 7.31 | -- | -- | -- | -- | -- | 0.78 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 76.74 | temperature | 15 | 1440 | > th | dose dependent | rect. | 18 | 13 |
| 7 | 76.94 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 13 |
| 24 | 77.14 | temperature | 20 | 1440 | > th | dose dependent | rect. | 5 | 2 |
| 48 | 77.36 | temperature | 15 | 1440 | > th | dose dependent | sin | 11 | NA |
| 99 | 77.66 | temperature | 30 | 1440 | < th | dose dependent | sin | 11 | NA |
| 122 | 77.82 | temperature | 15 | 1440 | > th | dose dependent | rect. | 2 | 6 |
| 139 | 77.91 | temperature | 30 | 1440 | < th | dose dependent | rect. | 2 | 6 |
| 265 | 78.42 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 3 |
| 280 | 78.47 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 2 |
| 366 | 78.78 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 435 | 79.00 | temperature | 15 | 1440 | > th | dose dependent | rect. | 3 | 1 |
| 487 | 79.18 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 2 |
| 489 | 79.18 | temperature | 30 | 1440 | < th | dose dependent | rect. | 21 | 2 |
| 514 | 79.25 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 8 |
| 633 | 79.62 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 8 |