BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0938200 Os01g0938200|AK099501
(460 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0938200 Similar to RNA-binding protein BRUNOL5 (Fragment) 808 0.0
Os05g0373400 Paraneoplastic encephalomyelitis antigen famil... 671 0.0
Os07g0663300 Similar to RNA-binding protein BRUNOL5 (Fragment) 390 e-108
Os09g0123200 Paraneoplastic encephalomyelitis antigen famil... 168 1e-41
Os02g0815200 Similar to 29 kDa ribonucleoprotein, chloropla... 79 7e-15
Os09g0565200 Similar to Nucleic acid-binding protein precursor 78 1e-14
Os08g0557100 Similar to Nucleic acid-binding protein precursor 73 6e-13
Os07g0631900 RNA-binding region RNP-1 (RNA recognition moti... 72 8e-13
AK108879 70 4e-12
Os10g0151800 RNA-binding region RNP-1 (RNA recognition moti... 67 3e-11
>Os01g0938200 Similar to RNA-binding protein BRUNOL5 (Fragment)
Length = 460
Score = 808 bits (2086), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 395/422 (93%), Positives = 395/422 (93%)
Query: 39 SVKLFVGQVPKHMTEAELLAMFQEVAIVDEVTVIKDKATKASRGCCFLICPSREEADKAV 98
SVKLFVGQVPKHMTEAELLAMFQEVAIVDEVTVIKDKATKASRGCCFLICPSREEADKAV
Sbjct: 39 SVKLFVGQVPKHMTEAELLAMFQEVAIVDEVTVIKDKATKASRGCCFLICPSREEADKAV 98
Query: 99 NAYHNKHTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVTDTELTDLFSKYGNIKDLQ 158
NAYHNKHTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVTDTELTDLFSKYGNIKDLQ
Sbjct: 99 NAYHNKHTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVTDTELTDLFSKYGNIKDLQ 158
Query: 159 ILRGSQQTSKAGCAFLKYETKEQAVAAIEALNGKHKIEGSSVPLVVKWADTXXXXXXXXX 218
ILRGSQQTSKAGCAFLKYETKEQAVAAIEALNGKHKIEGSSVPLVVKWADT
Sbjct: 159 ILRGSQQTSKAGCAFLKYETKEQAVAAIEALNGKHKIEGSSVPLVVKWADTEKERQARKA 218
Query: 219 XXXXLQSSNMPSASPMQQSSLFGALQMGYMPQYNGFGYQPPGTYGLMQYPLSPMQNQATF 278
LQSSNMPSASPMQQSSLFGALQMGYMPQYNGFGYQPPGTYGLMQYPLSPMQNQATF
Sbjct: 219 QKAQLQSSNMPSASPMQQSSLFGALQMGYMPQYNGFGYQPPGTYGLMQYPLSPMQNQATF 278
Query: 279 PNMVQPVNQGNSIRGVNPELSPNSVPRSFNAMQLSSPYPPVPGVQYAGSYPGGLMNNRPF 338
PNMVQPVNQGNSIRGVNPELSPNSVPRSFNAMQLSSPYPPVPGVQYAGSYPGGLMNNRPF
Sbjct: 279 PNMVQPVNQGNSIRGVNPELSPNSVPRSFNAMQLSSPYPPVPGVQYAGSYPGGLMNNRPF 338
Query: 339 GNSFSSIKVPIVXXXXXXXXXXXXXXGGQIEGPPGANLFIYHIPQDYGDQDLSNAFQRFG 398
GNSFSSIKVPIV GGQIEGPPGANLFIYHIPQDYGDQDLSNAFQRFG
Sbjct: 339 GNSFSSIKVPIVNANSPASSSPSSNPGGQIEGPPGANLFIYHIPQDYGDQDLSNAFQRFG 398
Query: 399 RVLSAKVFVDKATGSSKCFGFVSYDSPASAQAAIGVMNGFQLGSKKLKVQLKRDNSKHSK 458
RVLSAKVFVDKATGSSKCFGFVSYDSPASAQAAIGVMNGFQLGSKKLKVQLKRDNSKHSK
Sbjct: 399 RVLSAKVFVDKATGSSKCFGFVSYDSPASAQAAIGVMNGFQLGSKKLKVQLKRDNSKHSK 458
Query: 459 PF 460
PF
Sbjct: 459 PF 460
>Os05g0373400 Paraneoplastic encephalomyelitis antigen family protein
Length = 466
Score = 671 bits (1731), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 334/422 (79%), Positives = 359/422 (85%)
Query: 39 SVKLFVGQVPKHMTEAELLAMFQEVAIVDEVTVIKDKATKASRGCCFLICPSREEADKAV 98
SVKLFVGQVPK MTE EL AMF VA+VDEVT+I+DKATKASRGCCFLICPSREEADKAV
Sbjct: 45 SVKLFVGQVPKQMTEDELAAMFAAVAVVDEVTLIRDKATKASRGCCFLICPSREEADKAV 104
Query: 99 NAYHNKHTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVTDTELTDLFSKYGNIKDLQ 158
NAYHNK TLPGASSPLQVKYADGELERLEHKLFIGMLPKNVTD E+TDLFS+YGNIKDLQ
Sbjct: 105 NAYHNKRTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVTDAEMTDLFSQYGNIKDLQ 164
Query: 159 ILRGSQQTSKAGCAFLKYETKEQAVAAIEALNGKHKIEGSSVPLVVKWADTXXXXXXXXX 218
ILRGSQQTSKAGCAFLKYETKEQA+AAIEALNGKHKIEGSSVPLVVKWADT
Sbjct: 165 ILRGSQQTSKAGCAFLKYETKEQALAAIEALNGKHKIEGSSVPLVVKWADTEKERQARKA 224
Query: 219 XXXXLQSSNMPSASPMQQSSLFGALQMGYMPQYNGFGYQPPGTYGLMQYPLSPMQNQATF 278
SNM + + MQQSSLFGA+QMGY+PQYNG+GYQP GTYGLMQYPLSPMQNQA F
Sbjct: 225 QKAQFHPSNMSNPNAMQQSSLFGAMQMGYVPQYNGYGYQPQGTYGLMQYPLSPMQNQAAF 284
Query: 279 PNMVQPVNQGNSIRGVNPELSPNSVPRSFNAMQLSSPYPPVPGVQYAGSYPGGLMNNRPF 338
PNMVQ VNQG+SIRGVN ELSPNS PRSFN+MQL SPY PVP +QY GSYPG +N+RPF
Sbjct: 285 PNMVQSVNQGSSIRGVNSELSPNSAPRSFNSMQLGSPYSPVPSMQYPGSYPGNAINSRPF 344
Query: 339 GNSFSSIKVPIVXXXXXXXXXXXXXXGGQIEGPPGANLFIYHIPQDYGDQDLSNAFQRFG 398
NS +S+KVP G QIEGPPGANLFIYHIPQ++GDQDL+ AFQ FG
Sbjct: 345 VNSHNSMKVPNANASSPTSSSTSSNPGPQIEGPPGANLFIYHIPQEFGDQDLAGAFQGFG 404
Query: 399 RVLSAKVFVDKATGSSKCFGFVSYDSPASAQAAIGVMNGFQLGSKKLKVQLKRDNSKHSK 458
RVLSAKVFVDKATG SKCFGF+SYDSPASAQ AI +MNG+QLG KKLKVQLKRDNSKHSK
Sbjct: 405 RVLSAKVFVDKATGLSKCFGFISYDSPASAQTAISMMNGYQLGGKKLKVQLKRDNSKHSK 464
Query: 459 PF 460
+
Sbjct: 465 TY 466
>Os07g0663300 Similar to RNA-binding protein BRUNOL5 (Fragment)
Length = 427
Score = 390 bits (1001), Expect = e-108, Method: Compositional matrix adjust.
Identities = 220/429 (51%), Positives = 277/429 (64%), Gaps = 28/429 (6%)
Query: 40 VKLFVGQVPKHMTEAELLAMFQEVAIVDEVTVIKDKATKASRGCCFLICPSREEADKAVN 99
V+LFVGQVP+ M E ++LA+ + A D+ TVI+D+AT ASRGCCF++C SREEADKA+
Sbjct: 12 VRLFVGQVPRSMAEEDILAVVRAAARADDATVIRDRATGASRGCCFVVCSSREEADKAIA 71
Query: 100 AYHNKHTLPGASSPLQVKYADGELERL--EHKLFIGMLPKNVTDTELTDLFSKYGNIKDL 157
AYHNK TLPGAS +QVKYADGELERL E KLFIGMLP++V + E++ LFS+YGNI+ L
Sbjct: 72 AYHNKCTLPGASRAMQVKYADGELERLAAEQKLFIGMLPRDVKENEVSALFSQYGNIRQL 131
Query: 158 QILRGSQQTSKAG-CAFLKYETKEQAVAAIEALNGKHKI-EGSSVPLVVKWADTXXXXXX 215
++LR Q+T KA CA L++ +KE A AAIEALNG + GSS LVVK ADT
Sbjct: 132 KVLRSPQKTRKAAACAILEFGSKEHARAAIEALNGTRVVFNGSSATLVVKLADTEREKQA 191
Query: 216 XXXXXXXLQSSNMPSASPM------QQSSLFGALQMGYMPQYNGFGYQPPGTYGLMQYPL 269
Q S P+ Q S+ GA QM ++P YN Y+ PG YG + PL
Sbjct: 192 RKAQKAQAQPSK-----PLRFYLFPQLLSISGAPQMSFLPPYNVLDYKVPGHYGHTKNPL 246
Query: 270 SPMQNQATFPNMVQPVNQGNSIRGVNPELSPNSVPRSFNAMQ----LSSPYPPVPGVQYA 325
A + M VNQGN ++G+N + P + P+ N +Q + PYP + G+ Y
Sbjct: 247 ------ALYSTMYPHVNQGNLLQGLNTNIFPGTDPKISNLIQSAGYIQPPYPDLSGLHYP 300
Query: 326 GSYPGGLMNNRPFGNSFSSIKVPI-VXXXXXXXXXXXXXXGGQIEGPPGANLFIYHIPQD 384
SY G L+ + P FS KV I G +IEGPP ANLF+Y IPQ+
Sbjct: 301 VSYAGALVGDTP--QYFSDGKVNIPNSHSNHASSAANTKIGSKIEGPPRANLFVYDIPQE 358
Query: 385 YGDQDLSNAFQRFGRVLSAKVFVDKATGSSKCFGFVSYDSPASAQAAIGVMNGFQLGSKK 444
YGD+DL+N FQ FGR+LS KVF+D+ATG SKCFGFVSYD+PASAQAAI MNG Q+G K
Sbjct: 359 YGDEDLANLFQEFGRILSTKVFIDRATGVSKCFGFVSYDTPASAQAAIRRMNGSQIGGKM 418
Query: 445 LKVQLKRDN 453
LKVQLKR+
Sbjct: 419 LKVQLKRET 427
>Os09g0123200 Paraneoplastic encephalomyelitis antigen family protein
Length = 637
Score = 168 bits (425), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 75/172 (43%), Positives = 120/172 (69%), Gaps = 4/172 (2%)
Query: 40 VKLFVGQVPKHMTEAELLAMFQEVAIVDEVTVIKDKATKASRGCCFLICPSREEADKAVN 99
VKLF+G VP+ TE ++ +F+E V EV +IKD+ T +GCCF+ + EEA++A+
Sbjct: 21 VKLFIGSVPRTATEDDVRPLFEEHGDVVEVALIKDRKTGEQQGCCFVKYATSEEAERAIR 80
Query: 100 AYHNKHTLPGASSPLQVKYADGELER---LEHKLFIGMLPKNVTDTELTDLFSKYGNIKD 156
A HN++TLPGA P+QV+YADGE ER +EHKLF+ L K T E+ ++F+ YG+++D
Sbjct: 81 ALHNQYTLPGAMGPIQVRYADGERERHGAIEHKLFVASLNKQATAKEIEEIFAPYGHVED 140
Query: 157 LQILRGSQQTSKAGCAFLKYETKEQAVAAIEALNGKHKIEGSSVPLVVKWAD 208
+ I++ + S+ GC F+K+ ++E A+AA+ AL+G + + G PL++++AD
Sbjct: 141 VYIMKDGMRQSR-GCGFVKFSSREPALAAMSALSGNYVMRGCEQPLIIRFAD 191
>Os02g0815200 Similar to 29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29)
Length = 316
Score = 79.0 bits (193), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 86/168 (51%), Gaps = 10/168 (5%)
Query: 39 SVKLFVGQVPKHMTEAELLAMFQEVAIVDEVTVIKDKATKASRGCCFLICPSREEADKAV 98
+ KL+ G +P + A+L + Q+ A + V V+ D+AT SRG F+ + E+ ++ +
Sbjct: 144 TTKLYFGNLPYNCDSAQLAGIVQDYATPEMVEVLYDRATGRSRGFAFVTMSTIEDCEQVI 203
Query: 99 NAYHNKHTLPGASSPLQVKYADGELERL------EHKLFIGMLPKNVTDTELTDLFSKYG 152
N + ++V +AD +L EHKLF+G L VT LT++F K G
Sbjct: 204 K---NLDGSLYSGRTMRVNFADKPKPKLPLYPETEHKLFVGNLSWTVTSEMLTEMFQKCG 260
Query: 153 NIKDLQILRGSQQTSKAGCAFLKYETKEQAVAAIEALNGKHKIEGSSV 200
N+ ++L + G F+ Y TKE+ A+ +LNG ++EG +
Sbjct: 261 NVVGARVLYDGETGRSRGYGFVCYSTKEEMDEALSSLNGT-ELEGREI 307
>Os09g0565200 Similar to Nucleic acid-binding protein precursor
Length = 322
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 83/161 (51%), Gaps = 12/161 (7%)
Query: 41 KLFVGQVPKHMTEAELLAMFQEVAIVDEVTVIKDKATKASRGCCFLICPSREEADKAVNA 100
K++VG +P + L +F++ IV+ VI ++ T SRG F+ + EEA+KAV
Sbjct: 144 KVYVGNLPYDIDSERLAQLFEQAGIVEVSEVIYNRETDRSRGFGFVTMSTVEEAEKAVEM 203
Query: 101 YHNKHTLPGASSPLQVKYADGELERLEH---------KLFIGMLPKNVTDTELTDLFSKY 151
+H ++ + G L V A R+E ++++G LP V D+ L LFS++
Sbjct: 204 FH-RYDVDGRL--LTVNKAAPRGARVERPPRQFGPSFRIYVGNLPWQVDDSRLVQLFSEH 260
Query: 152 GNIKDLQILRGSQQTSKAGCAFLKYETKEQAVAAIEALNGK 192
G + D +++ + G F+ T+E+ AI AL+G+
Sbjct: 261 GKVVDARVVYDRETGRSRGFGFVTMATQEELDDAIAALDGQ 301
>Os08g0557100 Similar to Nucleic acid-binding protein precursor
Length = 194
Score = 72.8 bits (177), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 80/162 (49%), Gaps = 12/162 (7%)
Query: 41 KLFVGQVPKHMTEAELLAMFQEVAIVDEVTVIKDKATKASRGCCFLICPSREEADKAVNA 100
K++VG +P + L +F++ +V+ VI ++ T SRG F+ + EEADKA+
Sbjct: 17 KVYVGNLPYDVDSEGLAQLFEQAGVVEVAEVIYNRETGQSRGFGFVTMSTIEEADKAIEM 76
Query: 101 YHNKHTLPGASSPLQVKYADGELERLEH---------KLFIGMLPKNVTDTELTDLFSKY 151
N++ + G L V A R+E + ++G LP V D+ L LFS++
Sbjct: 77 L-NRYDING--RLLNVNRAAPRGSRVERPPRQFAPAFRAYVGNLPWQVDDSRLLQLFSEH 133
Query: 152 GNIKDLQILRGSQQTSKAGCAFLKYETKEQAVAAIEALNGKH 193
G + + ++ + G F+ +KE+ AI AL+G+
Sbjct: 134 GEVVNASVVYDRESGRSRGFGFVSMASKEELDDAISALDGQE 175
>Os07g0631900 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 264
Score = 72.0 bits (175), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 86/180 (47%), Gaps = 19/180 (10%)
Query: 40 VKLFVGQVPKHMTEAELLAMFQEVAIVDEVTVIKDKATKASRGCCFLICPSREEADKAVN 99
+K+FVG +P + A+L +F++ V+ V V+ D+ T SRG F+ + EEA AV
Sbjct: 80 LKVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVVYDRQTGRSRGFGFVTMSTAEEAGAAVE 139
Query: 100 AYHNKHTLPGASSPLQVK---------------YADGELERLEHKLFIGMLPKNVTDTEL 144
+ N +T G PL+V G +KL++G L V ++ L
Sbjct: 140 QF-NGYTFQG--RPLRVNSGPPPPRDDFAPRSPRGGGSNFDSSNKLYVGNLAWGVDNSTL 196
Query: 145 TDLFSKYGNIKDLQILRGSQQTSKAGCAFLKYETKEQAVAAIEALNGKHKIEGSSVPLVV 204
+LFS+ G + D +++ + G F+ Y + E+ AI L+G ++G + + V
Sbjct: 197 ENLFSEQGTVLDAKVIYDRESGRSRGFGFVTYGSAEEVNNAISNLDGVD-LDGRQIRVTV 255
>AK108879
Length = 670
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 76/151 (50%), Gaps = 3/151 (1%)
Query: 42 LFVGQVPKHMTEAELLAMFQEVAIVDEVTVIKDKATKASRGCCFLICPSREEADKAVNAY 101
L+VG++ +TEA L +F ++ V + V +D T+ S G ++ S + ++A+ +
Sbjct: 46 LYVGELHPDVTEAMLYEIFSQIGPVSSIRVCRDAITRRSLGYAYVNFHSPADCERAIESL 105
Query: 102 HNKHTLPGASSPLQVKYADGELERLE-HKLFIGMLPKNVTDTELTDLFSKYGNIKDLQIL 160
N + G L D L R +FI L K + + L D FS +GNI +++
Sbjct: 106 -NYALIKGQPCRLMWSQRDPALRRSGVGNIFIKNLDKTIDNKALHDTFSAFGNILSCKVV 164
Query: 161 RGSQQTSKAGCAFLKYETKEQAVAAIEALNG 191
Q S+ G F+ YET+E A AI+ +NG
Sbjct: 165 TDDQGASR-GFGFVHYETREAADLAIDKVNG 194
>Os10g0151800 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 472
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 89/171 (52%), Gaps = 13/171 (7%)
Query: 41 KLFVGQVPKHMTEAELLAMFQEVAIVDEVTVIKDKATKASRGCCFLICPSREEADKAVNA 100
++F+G +P+ TE +L + + + EV ++KDK TK ++G F+ ++ A +A+
Sbjct: 110 EVFIGGLPRDTTEDDLHELCEAFGEISEVRLMKDKETKENKGFAFVTFTGKDGAQRAIED 169
Query: 101 YHNKHTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVTDTELTDLFSKYG-NIKDLQI 159
H+K + + L + +H+LF+G +PK +++ EL ++ G + ++++
Sbjct: 170 LHDKEH--------KGRTLRCSLSQAKHRLFVGNVPKGLSEDELRNIIQGKGPGVVNIEM 221
Query: 160 LRGSQQTSK-AGCAFLKYETKEQAVAAIEALNGKH-KIEGSSVPLVVKWAD 208
+ S+ G F++Y A A + L+ + K++GS L V WA+
Sbjct: 222 FKDLHDPSRNRGFLFVEYYNHACADYAKQKLSAPNFKVDGSQ--LTVSWAE 270
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.133 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,719,365
Number of extensions: 565017
Number of successful extensions: 2106
Number of sequences better than 1.0e-10: 11
Number of HSP's gapped: 2116
Number of HSP's successfully gapped: 12
Length of query: 460
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 356
Effective length of database: 11,605,545
Effective search space: 4131574020
Effective search space used: 4131574020
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 158 (65.5 bits)