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Os04g0620700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : RNA-binding region RNP-1 (RNA recognition motif) domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 13.6 (0.0223) R2 : 0.617
β1 : 1.26 (0.0815) R2dD : 0.21 R2D : 0.126
β2 : 1.23 (0.0581) R2dC : 0.381 R2C : 0.33
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.515 (0.0475) R2dN8 : 0.133 R2N8 : 0.0354
σ : 0.418
deviance : 79.85
__
_____
C
peak time of C : 17.6
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
71.39 0.397 13.5 1.52 1.25 -0.518 0.517 0.828 0.696 18 11.24 1316 -- --
72.46 0.396 13.6 1.5 1.23 -0.514 0.573 -- 0.68 18 12.84 1336 -- --
71.77 0.395 13.6 1.51 1.25 -0.516 -- 0.84 0.69 17.9 12.77 1312 -- --
72.98 0.398 13.6 1.45 1.24 -0.506 -- -- 0.685 17.9 13.58 1343 -- --
150.25 0.571 13.5 1.53 -- -0.496 -- 0.832 0.659 -- 21.25 1367 -- --
79.27 0.417 13.6 1.27 1.23 -- 0.489 -- 0.513 17.7 -- -- -- --
79.85 0.418 13.6 1.26 1.23 -- -- -- 0.515 17.6 -- -- -- --
150.55 0.571 13.5 1.41 -- -0.47 -- -- 0.686 -- 21.53 1375 -- --
87.03 0.434 13.6 -- 1.23 -0.872 -- -- 0.273 17.4 59.97 35205 -- --
158.83 0.589 13.6 1.22 -- -- -- -- 0.486 -- -- -- -- --
121.96 0.517 13.6 -- 1.21 -- -- -- 0.375 17.7 -- -- -- --
165.04 0.598 13.6 -- -- -0.963 -- -- 0.215 -- 59.68 34480 -- --
198.39 0.657 13.6 -- -- -- -- -- 0.35 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 62.93 temperature 10.0 270 > th dose dependent rect. 9 1
2 63.04 wind 5.0 270 < th dose independent rect. 3 3
3 63.19 precipitation 0.1 90 < th dose independent rect. 15 17
4 63.19 precipitation 0.1 90 < th dose dependent rect. 15 17
5 63.30 temperature 15.0 90 > th dose independent rect. 15 17
6 63.38 temperature 10.0 90 > th dose dependent rect. 8 6
8 63.45 precipitation 0.1 10 < th dose independent rect. 15 18
10 63.45 precipitation 0.1 10 < th dose dependent rect. 15 18
11 63.46 temperature 10.0 10 > th dose dependent rect. 9 6
12 63.49 precipitation 0.1 90 < th dose independent rect. 8 7
13 63.49 precipitation 0.1 90 < th dose dependent rect. 8 7
14 63.50 atmosphere 995.0 90 > th dose independent rect. 8 7
15 63.52 humidity 90.0 10 < th dose independent rect. 2 7
16 63.58 wind 9.0 90 < th dose independent rect. 8 7
17 63.60 temperature 10.0 90 > th dose independent rect. 8 7
18 63.60 atmosphere 1015.0 90 < th dose independent rect. 8 7
22 63.68 wind 5.0 90 < th dose independent rect. 3 5
25 63.70 temperature 15.0 10 > th dose independent rect. 15 18
29 63.86 radiation 40.0 90 < th dose independent rect. 15 17
34 63.91 wind 9.0 90 < th dose independent rect. 15 17
36 63.91 radiation 40.0 90 < th dose independent rect. 13 19
41 64.00 precipitation 0.1 270 < th dose independent rect. 3 3
42 64.00 precipitation 0.1 270 < th dose dependent rect. 3 3
46 64.10 temperature 10.0 10 > th dose independent rect. 9 6
48 64.10 atmosphere 995.0 10 > th dose independent rect. 9 6
49 64.10 atmosphere 1015.0 10 < th dose independent rect. 9 6
50 64.10 precipitation 0.1 10 < th dose independent rect. 9 6
53 64.10 precipitation 0.1 270 < th dose independent rect. 10 23
54 64.10 precipitation 0.1 10 < th dose dependent rect. 9 6
55 64.10 precipitation 0.1 270 < th dose dependent rect. 10 23
56 64.11 wind 9.0 10 < th dose independent rect. 9 6
57 64.12 atmosphere 1005.0 90 > th dose dependent rect. 3 5
60 64.14 radiation 1.0 10 > th dose independent rect. 9 6
61 64.15 radiation 1.0 90 > th dose independent rect. 8 7
62 64.16 wind 1.0 90 > th dose independent rect. 8 7
65 64.23 precipitation 0.1 270 < th dose independent rect. 3 14
66 64.23 precipitation 0.1 270 < th dose dependent rect. 3 14
84 64.37 wind 9.0 10 < th dose independent rect. 15 18
97 64.46 temperature 10.0 1440 > th dose independent rect. 10 6
101 64.46 temperature 10.0 1440 > th dose independent rect. 16 18
110 64.55 wind 7.0 270 < th dose independent rect. 9 1
111 64.55 wind 9.0 270 < th dose independent rect. 6 21
112 64.56 radiation 1.0 270 > th dose independent rect. 9 1
114 64.57 humidity 50.0 90 > th dose independent rect. 8 7
115 64.57 humidity 90.0 10 < th dose independent rect. 14 19
117 64.60 precipitation 0.1 270 < th dose independent rect. 9 1
118 64.60 precipitation 0.1 90 < th dose independent rect. 3 5
121 64.60 precipitation 0.1 270 < th dose dependent rect. 9 1
122 64.60 precipitation 0.1 90 < th dose dependent rect. 3 5
126 64.62 humidity 50.0 270 > th dose independent rect. 9 1
130 64.66 temperature 10.0 270 > th dose independent rect. 9 1
131 64.66 atmosphere 995.0 270 > th dose independent rect. 9 1
132 64.66 atmosphere 1015.0 270 < th dose independent rect. 9 1
134 64.66 temperature 10.0 270 > th dose independent rect. 10 23
141 64.72 atmosphere 1015.0 90 < th dose independent rect. 15 17
143 64.73 wind 9.0 270 < th dose dependent rect. 3 3
158 64.77 radiation 40.0 10 < th dose independent rect. 15 18
164 64.81 radiation 1.0 90 > th dose independent rect. 15 17
165 64.82 atmosphere 1010.0 270 < th dose independent rect. 3 3
170 64.83 wind 9.0 270 < th dose dependent rect. 7 6
173 64.84 temperature 10.0 270 > th dose independent rect. 3 3
175 64.84 temperature 30.0 270 < th dose independent rect. 3 3
176 64.84 humidity 50.0 270 > th dose independent rect. 3 3
179 64.84 atmosphere 995.0 270 > th dose independent rect. 3 3
181 64.84 radiation 20.0 270 < th dose independent rect. 3 3
185 64.84 temperature 10.0 270 > th dose independent rect. 6 21
186 64.85 atmosphere 1015.0 10 < th dose independent rect. 15 18
191 64.91 radiation 10.0 270 < th dose independent rect. 17 10
192 64.92 atmosphere 1000.0 270 > th dose independent rect. 18 9
193 64.92 atmosphere 995.0 90 > th dose independent rect. 15 17
195 64.94 radiation 40.0 270 < th dose dependent rect. 3 3
202 65.00 atmosphere 995.0 90 > th dose independent rect. 8 19
204 65.01 wind 9.0 90 < th dose independent rect. 8 19
216 65.05 wind 9.0 270 < th dose dependent rect. 4 1
220 65.06 temperature 10.0 90 > th dose dependent rect. 4 4
221 65.06 radiation 30.0 270 < th dose dependent rect. 17 10
231 65.08 wind 1.0 270 > th dose independent rect. 9 1
234 65.08 radiation 10.0 30 < th dose dependent sin 12 NA
253 65.14 wind 9.0 270 < th dose independent rect. 17 10
256 65.15 temperature 10.0 90 > th dose independent rect. 3 5
258 65.15 temperature 30.0 90 < th dose independent rect. 3 5
259 65.15 humidity 50.0 90 > th dose independent rect. 3 5
261 65.15 atmosphere 995.0 90 > th dose independent rect. 3 5
262 65.15 atmosphere 1015.0 90 < th dose independent rect. 3 5
270 65.15 temperature 10.0 90 > th dose independent rect. 8 19
271 65.15 wind 9.0 270 < th dose dependent rect. 8 2
275 65.17 radiation 1.0 270 < th dose dependent rect. 4 1
282 65.19 atmosphere 1000.0 270 > th dose dependent rect. 3 2
286 65.21 wind 1.0 270 > th dose independent rect. 3 2
297 65.22 temperature 10.0 270 > th dose independent rect. 17 10
301 65.22 temperature 10.0 270 > th dose independent rect. 3 14
302 65.22 atmosphere 1015.0 270 < th dose independent rect. 3 14
312 65.26 radiation 40.0 90 < th dose independent rect. 3 5
325 65.29 atmosphere 1000.0 10 > th dose dependent rect. 3 6
330 65.32 temperature 10.0 270 > th dose independent rect. 4 1
332 65.32 temperature 30.0 270 < th dose independent rect. 4 1
333 65.32 humidity 50.0 270 > th dose independent rect. 4 1
336 65.32 atmosphere 995.0 270 > th dose independent rect. 4 1
337 65.32 atmosphere 1010.0 270 < th dose independent rect. 4 1
339 65.32 radiation 20.0 270 < th dose independent rect. 4 1
343 65.32 humidity 90.0 10 < th dose independent rect. 9 6
346 65.32 humidity 50.0 270 > th dose independent rect. 17 10
348 65.32 temperature 10.0 270 > th dose independent rect. 5 23
364 65.33 wind 9.0 90 < th dose dependent rect. 3 5
368 65.34 radiation 40.0 270 < th dose dependent rect. 4 1
376 65.36 humidity 90.0 90 < th dose independent rect. 8 7
377 65.36 atmosphere 995.0 270 > th dose independent rect. 6 21
392 65.38 atmosphere 995.0 10 > th dose independent rect. 15 18
407 65.39 wind 1.0 270 > th dose independent rect. 13 18
508 65.62 precipitation 0.1 90 < th dose independent rect. 8 19
509 65.62 precipitation 0.1 90 < th dose dependent rect. 8 19
513 65.64 radiation 1.0 90 > th dose independent rect. 18 14
536 65.70 radiation 1.0 30 > th dose independent rect. 5 4
578 65.78 radiation 1.0 90 < th dose independent sin 12 NA
581 65.78 humidity 50.0 90 > th dose independent rect. 8 19
582 65.78 radiation 40.0 270 < th dose dependent rect. 2 5
631 65.92 wind 9.0 270 < th dose independent rect. 3 14
649 65.96 radiation 40.0 10 < th dose independent rect. 12 21
650 65.96 precipitation 0.1 270 < th dose independent rect. 6 21
651 65.96 precipitation 0.1 270 < th dose dependent rect. 6 21
657 65.99 humidity 50.0 10 > th dose independent rect. 15 18
705 66.07 atmosphere 1000.0 270 > th dose independent rect. 21 14
738 66.11 humidity 50.0 270 > th dose dependent rect. 17 9
743 66.13 humidity 50.0 270 > th dose independent rect. 6 21
750 66.15 temperature 10.0 270 > th dose dependent rect. 4 1
755 66.17 wind 1.0 270 > th dose independent rect. 2 5
798 66.25 radiation 1.0 90 > th dose independent sin 12 NA
811 66.26 wind 9.0 90 < th dose dependent rect. 15 17
830 66.31 temperature 10.0 10 > th dose dependent rect. 15 18
852 66.36 atmosphere 1005.0 270 > th dose independent rect. 3 3
872 66.37 wind 9.0 270 < th dose independent rect. 10 22
894 66.42 precipitation 0.1 270 < th dose independent rect. 17 10
898 66.42 precipitation 0.1 270 < th dose dependent rect. 17 10
913 66.44 humidity 90.0 270 < th dose independent rect. 9 1
984 66.51 atmosphere 1015.0 90 < th dose dependent rect. 15 17