BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0620700 Os04g0620700|AK103446
         (707 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os04g0620700  RNA-binding region RNP-1 (RNA recognition moti...   608   e-174
Os08g0192900  RNA-binding region RNP-1 (RNA recognition moti...   258   1e-68

>Os04g0620700 RNA-binding region RNP-1 (RNA recognition motif) domain containing
           protein
          Length = 707

 Score =  608 bits (1567), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 365/707 (51%), Positives = 365/707 (51%)

Query: 1   MGKSSKKSAVEVAPTXXXXXXXXXXXXXXRNAEDEIEKAVSAKKQKTVRXXXXXXXXXXX 60
           MGKSSKKSAVEVAPT              RNAEDEIEKAVSAKKQKTVR           
Sbjct: 1   MGKSSKKSAVEVAPTSVSVSEGKSGKKGKRNAEDEIEKAVSAKKQKTVREKVVPSKEEAK 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXAQPKKTVQPKKAAQPAKEEXXXXXXXXXXXXX 120
                                       AQPKKTVQPKKAAQPAKEE             
Sbjct: 61  KVKKQPPPKKVESSSSEEDSSESEEEVKAQPKKTVQPKKAAQPAKEESSDDSSDDSSSDD 120

Query: 121 EPAKKPVARPNKAALSTNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTNGSKKVETX 180
           EPAKKPVARPNKAALSTN                                TNGSKKVET 
Sbjct: 121 EPAKKPVARPNKAALSTNSSSSDDSSDESLSDDEPVKKPAAPLKKPVALATNGSKKVETD 180

Query: 181 XXXXXXXXXXXXXXXXKKTAAPVKKPSVAAIQKKTQXXXXXXXXXXXXXXXXVPTXXXXX 240
                           KKTAAPVKKPSVAAIQKKTQ                VPT     
Sbjct: 181 SSSSDSSSDEESDEDDKKTAAPVKKPSVAAIQKKTQESDSSDSDSDSESDEDVPTKAPAV 240

Query: 241 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPTIPAKRPL 300
                                                              PTIPAKRPL
Sbjct: 241 AKKKEESSESSDSESDSDSDDEAAAVKKEEESSDSSDSDSESESDSDEPAKPTIPAKRPL 300

Query: 301 TKDTKKGQSKXXXXXXXXXXXXXXXXXPPQKKIXXXXXXXXXXXXXXXXXXEIXXXXXXX 360
           TKDTKKGQSK                 PPQKKI                  EI       
Sbjct: 301 TKDTKKGQSKDESEDSSDESSEESGDEPPQKKIKDSTTSGTTKPSPKATKKEISSDDESD 360

Query: 361 XXXXXXXXXXXXVXXXXXXXXXXXPVAQXXXXXXXXXXXXXXXXXXXPAKTPQKKETAVS 420
                       V           PVAQ                   PAKTPQKKETAVS
Sbjct: 361 EDDSSDESSDEDVKQKQTQAKKQAPVAQESSSSDESSEEDSDMESDEPAKTPQKKETAVS 420

Query: 421 VGSNKSATKPGQEEPKTPASNQNQATGSKTLFVGNLPYNXXXXXXXXXXXXAGEVVDIRF 480
           VGSNKSATKPGQEEPKTPASNQNQATGSKTLFVGNLPYN            AGEVVDIRF
Sbjct: 421 VGSNKSATKPGQEEPKTPASNQNQATGSKTLFVGNLPYNVEQEQVKQFFQEAGEVVDIRF 480

Query: 481 STFEDGNFRGFGHVEFATXXXXXXXXXXXGHDLMGRPVRLDLARERGAYTPGSGRDNSSF 540
           STFEDGNFRGFGHVEFAT           GHDLMGRPVRLDLARERGAYTPGSGRDNSSF
Sbjct: 481 STFEDGNFRGFGHVEFATAEAAKKALELAGHDLMGRPVRLDLARERGAYTPGSGRDNSSF 540

Query: 541 KKPAQSSGNTIFIKGFDTSLDIHQIRNSLEEHFGSCGEITRVSIPKDYETGASKGMAYMD 600
           KKPAQSSGNTIFIKGFDTSLDIHQIRNSLEEHFGSCGEITRVSIPKDYETGASKGMAYMD
Sbjct: 541 KKPAQSSGNTIFIKGFDTSLDIHQIRNSLEEHFGSCGEITRVSIPKDYETGASKGMAYMD 600

Query: 601 FADNGSLSKAYELNGSDLGGYSLYVDEARPRPDNNREXXXXXXXXXXXXXXXXXXXXXXX 660
           FADNGSLSKAYELNGSDLGGYSLYVDEARPRPDNNRE                       
Sbjct: 601 FADNGSLSKAYELNGSDLGGYSLYVDEARPRPDNNREGGFSGGRDFNSSGRGGRRGGRGD 660

Query: 661 XXXXXXXXXXXXXXXXXXXXXXXXXTPFKQSAGTPSAGKKTTFGDDD 707
                                    TPFKQSAGTPSAGKKTTFGDDD
Sbjct: 661 GSRGRGDRGRGRGFGRGDRGHGGRGTPFKQSAGTPSAGKKTTFGDDD 707



>Os08g0192900 RNA-binding region RNP-1 (RNA recognition motif) domain containing
           protein
          Length = 572

 Score =  258 bits (658), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 127/223 (56%), Positives = 152/223 (68%), Gaps = 8/223 (3%)

Query: 409 AKTPQKKETAVSVGSNKSATKPGQEEPKTPASNQNQATGSKTLFVGNLPYNXXXXXXXXX 468
           AKTP+KK  A        ATK   +EPKTPASNQ+Q T S TLF+GNL +N         
Sbjct: 279 AKTPKKKTPA--------ATKSQNDEPKTPASNQSQGTESATLFMGNLSFNLNQDQVKEF 330

Query: 469 XXXAGEVVDIRFSTFEDGNFRGFGHVEFATXXXXXXXXXXXGHDLMGRPVRLDLARERGA 528
               GEV+ +R +T EDG+ RGFGHV+FA+           G DL GRPVRLDLA ERGA
Sbjct: 331 FQEVGEVISVRLATHEDGSSRGFGHVQFASSEEAKKALELHGCDLDGRPVRLDLAHERGA 390

Query: 529 YTPGSGRDNSSFKKPAQSSGNTIFIKGFDTSLDIHQIRNSLEEHFGSCGEITRVSIPKDY 588
           YTP S  D  SF+K  + S  +IF+KGFD+SL+  +IR SLE HF  CGEITRVS+P D 
Sbjct: 391 YTPHSRNDTGSFQKQNRGSSQSIFVKGFDSSLEESKIRESLEGHFADCGEITRVSVPMDR 450

Query: 589 ETGASKGMAYMDFADNGSLSKAYELNGSDLGGYSLYVDEARPR 631
           ETGASKG+AY+DF D  S SKA EL+GSDLGGY+LYVDEA+P+
Sbjct: 451 ETGASKGIAYIDFKDQASFSKALELSGSDLGGYNLYVDEAKPK 493



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.306    0.125    0.347 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,120,690
Number of extensions: 359450
Number of successful extensions: 963
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 962
Number of HSP's successfully gapped: 3
Length of query: 707
Length of database: 17,035,801
Length adjustment: 108
Effective length of query: 599
Effective length of database: 11,396,689
Effective search space: 6826616711
Effective search space used: 6826616711
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 160 (66.2 bits)