BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0548000 Os08g0548000|AK069869
(183 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0548000 Myb, DNA-binding domain containing protein 342 6e-95
Os09g0532900 Myb, DNA-binding domain containing protein 157 3e-39
Os02g0732600 Similar to Typical P-type R2R3 Myb protein (Fr... 83 1e-16
Os09g0401000 Myb factor 83 1e-16
Os08g0428200 Similar to Typical P-type R2R3 Myb protein (Fr... 82 2e-16
Os06g0258000 Similar to Typical P-type R2R3 Myb protein (Fr... 82 3e-16
Os04g0593200 Similar to Transcription repressor MYB4 (Myb-r... 79 2e-15
Os07g0558100 Similar to Myb-related transcription factor LBM1 78 4e-15
Os05g0429900 Similar to MybHv5 (Fragment) 74 6e-14
Os03g0388600 Similar to Myb-like DNA-binding protein-like [... 74 6e-14
Os01g0695900 OSMYB4 74 7e-14
Os06g0221000 Similar to P-type R2R3 Myb protein (Fragment) 74 7e-14
Os08g0549000 Similar to MybHv5 (Fragment) 74 8e-14
Os12g0175400 Homeodomain-like containing protein 74 8e-14
Os11g0180900 Similar to Typical P-type R2R3 Myb protein (Fr... 74 8e-14
Os04g0461000 Similar to Myb-related transcription factor LBM1 73 9e-14
Os07g0634900 Myb, DNA-binding domain containing protein 73 1e-13
Os02g0579300 Similar to Transcription repressor MYB4 (Myb-r... 73 1e-13
Os09g0538400 Similar to P-type R2R3 Myb protein (Fragment) 72 2e-13
Os08g0486300 Myb, DNA-binding domain containing protein 72 2e-13
Os01g0874300 Similar to MybHv5 (Fragment) 72 2e-13
Os03g0371800 72 2e-13
Os08g0433400 Similar to Transcription repressor MYB4 (Myb-r... 72 3e-13
Os06g0112700 Similar to Typical P-type R2R3 Myb protein (Fr... 71 4e-13
Os05g0140100 Myb, DNA-binding domain containing protein 71 5e-13
Os01g0702700 Similar to Transcription factor MYB86 (Myb-rel... 70 6e-13
Os07g0497500 Similar to MYB transcription factor 70 8e-13
Os05g0543600 Similar to Transcription factor MYB86 (Myb-rel... 70 9e-13
Os01g0285300 Myb, DNA-binding domain containing protein 70 1e-12
Os03g0296000 Myb, DNA-binding domain containing protein 65 2e-11
>Os08g0548000 Myb, DNA-binding domain containing protein
Length = 183
Score = 342 bits (878), Expect = 6e-95, Method: Compositional matrix adjust.
Identities = 165/183 (90%), Positives = 165/183 (90%)
Query: 1 KHPGKTEYRWSKIAAKLPGRTDNEIKNHWNTHIKKKLIKMGIDPATHQPLPNTKVVXXXX 60
KHPGKTEYRWSKIAAKLPGRTDNEIKNHWNTHIKKKLIKMGIDPATHQPLPNTKVV
Sbjct: 1 KHPGKTEYRWSKIAAKLPGRTDNEIKNHWNTHIKKKLIKMGIDPATHQPLPNTKVVSQTR 60
Query: 61 XXXXXXXXXXXXXXNGMAYPFDPEGGCSRDMSVPTDSMEQSSRNTSSHGLDPLVNWLLEA 120
NGMAYPFDPEGGCSRDMSVPTDSMEQSSRNTSSHGLDPLVNWLLEA
Sbjct: 61 TSTLSTATTESAKSNGMAYPFDPEGGCSRDMSVPTDSMEQSSRNTSSHGLDPLVNWLLEA 120
Query: 121 ELPADEPWLNFTSSNEDDFSGIVKQSAWDGSTTDWLLDYQDFSMDDSSLIDGARVQNSDG 180
ELPADEPWLNFTSSNEDDFSGIVKQSAWDGSTTDWLLDYQDFSMDDSSLIDGARVQNSDG
Sbjct: 121 ELPADEPWLNFTSSNEDDFSGIVKQSAWDGSTTDWLLDYQDFSMDDSSLIDGARVQNSDG 180
Query: 181 LNF 183
LNF
Sbjct: 181 LNF 183
>Os09g0532900 Myb, DNA-binding domain containing protein
Length = 285
Score = 157 bits (398), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 103/203 (50%), Positives = 116/203 (57%), Gaps = 23/203 (11%)
Query: 4 GKTEYRWSKIAAKLPGRTDNEIKNHWNTHIKKKLIKMGIDPATHQPLPNTKVVXXXXXXX 63
K RWSKIAAKLPGRTDNEIKNHWNTHIKKKLIKMGIDP TH+PL +
Sbjct: 83 AKLGNRWSKIAAKLPGRTDNEIKNHWNTHIKKKLIKMGIDPVTHEPLDRKQESPATTSQS 142
Query: 64 XXXXXXXXXXXNGMAYPFDPEGGCSRDMSVPT--DSMEQSSRNTSS-----------HGL 110
+ RDMSV DS +SS NT+S H
Sbjct: 143 TVTAESSKSGEATRQQSRQLDDAVVRDMSVSAGGDSPPESSTNTASTAGGSSSSSSSHHQ 202
Query: 111 DPLVNWLLEAEL--PADEPWLNFTSSNE-DDFSGIVKQSA-----WD-GSTTDWLLDYQD 161
DPLV WLLE +L DEPWLNFT+SN+ D+FS I A WD G TTDWLLDYQD
Sbjct: 203 DPLVKWLLEEDLLPTGDEPWLNFTASNDVDEFSSIAATGATPALPWDVGMTTDWLLDYQD 262
Query: 162 FSMDDSSL-IDGARVQNSDGLNF 183
F M DSSL +D + V +S+G NF
Sbjct: 263 FGMGDSSLVVDASMVNSSNGSNF 285
>Os02g0732600 Similar to Typical P-type R2R3 Myb protein (Fragment)
Length = 255
Score = 83.2 bits (204), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 36/42 (85%), Positives = 40/42 (95%)
Query: 9 RWSKIAAKLPGRTDNEIKNHWNTHIKKKLIKMGIDPATHQPL 50
RWSKIAA+LPGRTDNEIKNHWNTHIKKKL KMG+DP TH+P+
Sbjct: 88 RWSKIAARLPGRTDNEIKNHWNTHIKKKLKKMGLDPVTHRPV 129
>Os09g0401000 Myb factor
Length = 279
Score = 82.8 bits (203), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 37/42 (88%), Positives = 39/42 (92%)
Query: 9 RWSKIAAKLPGRTDNEIKNHWNTHIKKKLIKMGIDPATHQPL 50
RWSKIA+ LPGRTDNEIKNHWNTHIKKKL KMGIDP TH+PL
Sbjct: 88 RWSKIASHLPGRTDNEIKNHWNTHIKKKLRKMGIDPVTHKPL 129
>Os08g0428200 Similar to Typical P-type R2R3 Myb protein (Fragment)
Length = 309
Score = 82.4 bits (202), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 37/42 (88%), Positives = 39/42 (92%)
Query: 9 RWSKIAAKLPGRTDNEIKNHWNTHIKKKLIKMGIDPATHQPL 50
RWSKIA+ LPGRTDNEIKNHWNTHIKKKL KMGIDP TH+PL
Sbjct: 88 RWSKIASHLPGRTDNEIKNHWNTHIKKKLKKMGIDPLTHRPL 129
>Os06g0258000 Similar to Typical P-type R2R3 Myb protein (Fragment)
Length = 267
Score = 81.6 bits (200), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 37/40 (92%), Positives = 38/40 (95%)
Query: 9 RWSKIAAKLPGRTDNEIKNHWNTHIKKKLIKMGIDPATHQ 48
RWSKIAA+LPGRTDNEIKNHWNTHIKKKL KMGIDP THQ
Sbjct: 88 RWSKIAARLPGRTDNEIKNHWNTHIKKKLRKMGIDPVTHQ 127
>Os04g0593200 Similar to Transcription repressor MYB4 (Myb-related protein 4)
(AtMYB4)
Length = 252
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 37/43 (86%)
Query: 9 RWSKIAAKLPGRTDNEIKNHWNTHIKKKLIKMGIDPATHQPLP 51
RWS IA L GRTDNEIKN+WNTHIKKKL++MGIDP THQ LP
Sbjct: 3 RWSTIATHLDGRTDNEIKNYWNTHIKKKLLRMGIDPVTHQRLP 45
>Os07g0558100 Similar to Myb-related transcription factor LBM1
Length = 368
Score = 77.8 bits (190), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 31/41 (75%), Positives = 38/41 (92%)
Query: 9 RWSKIAAKLPGRTDNEIKNHWNTHIKKKLIKMGIDPATHQP 49
+WS IAA+LPGRTDNEIKN+WNTHI+K+L++MGIDP TH P
Sbjct: 88 KWSAIAARLPGRTDNEIKNYWNTHIRKRLLRMGIDPVTHAP 128
>Os05g0429900 Similar to MybHv5 (Fragment)
Length = 260
Score = 73.9 bits (180), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 31/42 (73%), Positives = 37/42 (88%)
Query: 9 RWSKIAAKLPGRTDNEIKNHWNTHIKKKLIKMGIDPATHQPL 50
+WS IA +LPGRTDNEIKN+WNTHIK+KL+ GIDP TH+PL
Sbjct: 88 KWSLIAGQLPGRTDNEIKNYWNTHIKRKLLARGIDPQTHRPL 129
>Os03g0388600 Similar to Myb-like DNA-binding protein-like [Oryza sativa
(japonica cultivar-group)]
Length = 259
Score = 73.9 bits (180), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 31/45 (68%), Positives = 37/45 (82%)
Query: 8 YRWSKIAAKLPGRTDNEIKNHWNTHIKKKLIKMGIDPATHQPLPN 52
+RWS IA +LPGRTDNEIKN+WNT +KK+LI GIDPATH+ P
Sbjct: 32 HRWSTIATRLPGRTDNEIKNYWNTRLKKRLIGAGIDPATHRARPR 76
>Os01g0695900 OSMYB4
Length = 275
Score = 73.9 bits (180), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 31/42 (73%), Positives = 36/42 (85%)
Query: 9 RWSKIAAKLPGRTDNEIKNHWNTHIKKKLIKMGIDPATHQPL 50
RWS IA +LPGRTDNEIKN+WN+H+ KKLI GIDP TH+PL
Sbjct: 96 RWSLIAGRLPGRTDNEIKNYWNSHLSKKLIAQGIDPRTHKPL 137
>Os06g0221000 Similar to P-type R2R3 Myb protein (Fragment)
Length = 322
Score = 73.6 bits (179), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 32/41 (78%), Positives = 35/41 (85%)
Query: 9 RWSKIAAKLPGRTDNEIKNHWNTHIKKKLIKMGIDPATHQP 49
+WS IA LPGRTDNEIKN WNTH++KKLIKMGIDP TH P
Sbjct: 88 KWSAIAKHLPGRTDNEIKNFWNTHLRKKLIKMGIDPMTHCP 128
>Os08g0549000 Similar to MybHv5 (Fragment)
Length = 243
Score = 73.6 bits (179), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 30/42 (71%), Positives = 38/42 (90%)
Query: 9 RWSKIAAKLPGRTDNEIKNHWNTHIKKKLIKMGIDPATHQPL 50
+WS IAA+LPGRTDNEIKN+WNTHI++KL+ GIDP TH+P+
Sbjct: 88 KWSLIAARLPGRTDNEIKNYWNTHIRRKLLGRGIDPVTHRPV 129
>Os12g0175400 Homeodomain-like containing protein
Length = 266
Score = 73.6 bits (179), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 30/42 (71%), Positives = 37/42 (88%)
Query: 9 RWSKIAAKLPGRTDNEIKNHWNTHIKKKLIKMGIDPATHQPL 50
+WS IA +LPGRTDNEIKN+WNTHIK+KL+ G+DP TH+PL
Sbjct: 88 KWSLIAGRLPGRTDNEIKNYWNTHIKRKLLARGLDPLTHRPL 129
>Os11g0180900 Similar to Typical P-type R2R3 Myb protein (Fragment)
Length = 261
Score = 73.6 bits (179), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 30/42 (71%), Positives = 37/42 (88%)
Query: 9 RWSKIAAKLPGRTDNEIKNHWNTHIKKKLIKMGIDPATHQPL 50
+WS IA +LPGRTDNEIKN+WNTHIK+KL+ G+DP TH+PL
Sbjct: 88 KWSLIAGRLPGRTDNEIKNYWNTHIKRKLLARGVDPQTHRPL 129
>Os04g0461000 Similar to Myb-related transcription factor LBM1
Length = 345
Score = 73.2 bits (178), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 31/41 (75%), Positives = 35/41 (85%)
Query: 9 RWSKIAAKLPGRTDNEIKNHWNTHIKKKLIKMGIDPATHQP 49
RWS IA LP RTDNEIKN+WNTH+KK+L KMGIDP TH+P
Sbjct: 88 RWSAIATHLPKRTDNEIKNYWNTHLKKRLAKMGIDPVTHKP 128
>Os07g0634900 Myb, DNA-binding domain containing protein
Length = 176
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 32/46 (69%), Positives = 40/46 (86%)
Query: 9 RWSKIAAKLPGRTDNEIKNHWNTHIKKKLIKMGIDPATHQPLPNTK 54
+WS+IAA+LPGRTDNE+KN WN++IKKKL + GIDPATH+PL K
Sbjct: 88 KWSQIAAQLPGRTDNEVKNFWNSYIKKKLRQRGIDPATHKPLAELK 133
>Os02g0579300 Similar to Transcription repressor MYB4 (Myb-related protein 4)
(AtMYB4)
Length = 342
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 30/41 (73%), Positives = 35/41 (85%)
Query: 9 RWSKIAAKLPGRTDNEIKNHWNTHIKKKLIKMGIDPATHQP 49
RWS IA LP RTDNEIKN+WNTH+KK+L +MGIDP TH+P
Sbjct: 89 RWSAIATHLPKRTDNEIKNYWNTHLKKRLARMGIDPVTHKP 129
>Os09g0538400 Similar to P-type R2R3 Myb protein (Fragment)
Length = 251
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 29/42 (69%), Positives = 37/42 (88%)
Query: 9 RWSKIAAKLPGRTDNEIKNHWNTHIKKKLIKMGIDPATHQPL 50
+WS IA +LPGRTDNEIKN+WNTHI++KL+ GIDP TH+P+
Sbjct: 88 KWSLIAGRLPGRTDNEIKNYWNTHIRRKLLSRGIDPVTHRPI 129
>Os08g0486300 Myb, DNA-binding domain containing protein
Length = 357
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 30/41 (73%), Positives = 35/41 (85%)
Query: 9 RWSKIAAKLPGRTDNEIKNHWNTHIKKKLIKMGIDPATHQP 49
+WS IA LPGRTDNEIKN WNTH+KK+LI+MG DP TH+P
Sbjct: 88 KWSAIATHLPGRTDNEIKNFWNTHLKKRLIQMGFDPMTHRP 128
>Os01g0874300 Similar to MybHv5 (Fragment)
Length = 287
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 30/42 (71%), Positives = 37/42 (88%)
Query: 9 RWSKIAAKLPGRTDNEIKNHWNTHIKKKLIKMGIDPATHQPL 50
+WS IA +LPGRTDNEIKN+WNTHIK+KL+ GIDP TH+P+
Sbjct: 88 KWSLIAGQLPGRTDNEIKNYWNTHIKRKLLSRGIDPQTHRPV 129
>Os03g0371800
Length = 383
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 31/42 (73%), Positives = 38/42 (90%)
Query: 9 RWSKIAAKLPGRTDNEIKNHWNTHIKKKLIKMGIDPATHQPL 50
+WS+IAA+LPGRTDNE+KN WN++IKKKL GIDPATH+PL
Sbjct: 106 KWSQIAAQLPGRTDNEVKNFWNSYIKKKLRDRGIDPATHKPL 147
>Os08g0433400 Similar to Transcription repressor MYB4 (Myb-related protein 4)
(AtMYB4)
Length = 357
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 31/45 (68%), Positives = 36/45 (80%)
Query: 9 RWSKIAAKLPGRTDNEIKNHWNTHIKKKLIKMGIDPATHQPLPNT 53
RWS IA LP RTDNEIKN+WNTH+KK+L KMGIDP TH+ + T
Sbjct: 88 RWSAIATHLPKRTDNEIKNYWNTHLKKRLAKMGIDPVTHKAINGT 132
>Os06g0112700 Similar to Typical P-type R2R3 Myb protein (Fragment)
Length = 367
Score = 71.2 bits (173), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 29/41 (70%), Positives = 35/41 (85%)
Query: 9 RWSKIAAKLPGRTDNEIKNHWNTHIKKKLIKMGIDPATHQP 49
+WS IA KL GRTDNEIKN+WNTH++KKL+ GIDP TH+P
Sbjct: 89 KWSSIATKLKGRTDNEIKNYWNTHLRKKLLSQGIDPVTHRP 129
>Os05g0140100 Myb, DNA-binding domain containing protein
Length = 427
Score = 70.9 bits (172), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 32/42 (76%), Positives = 37/42 (88%)
Query: 9 RWSKIAAKLPGRTDNEIKNHWNTHIKKKLIKMGIDPATHQPL 50
RWS+IAA+LPGRTDNEIKN WN+ IKKKL + GIDP TH+PL
Sbjct: 88 RWSQIAAQLPGRTDNEIKNLWNSCIKKKLRQKGIDPNTHKPL 129
>Os01g0702700 Similar to Transcription factor MYB86 (Myb-related protein 86)
(AtMYB86) (Myb homolog 4) (AtMyb4)
Length = 301
Score = 70.5 bits (171), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 30/42 (71%), Positives = 37/42 (88%)
Query: 9 RWSKIAAKLPGRTDNEIKNHWNTHIKKKLIKMGIDPATHQPL 50
RWS+IA+ LPGRTDNEIKN WN+ +KKKL + GIDP+THQP+
Sbjct: 91 RWSQIASHLPGRTDNEIKNFWNSCLKKKLRQRGIDPSTHQPI 132
>Os07g0497500 Similar to MYB transcription factor
Length = 400
Score = 70.1 bits (170), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 30/48 (62%), Positives = 37/48 (77%)
Query: 9 RWSKIAAKLPGRTDNEIKNHWNTHIKKKLIKMGIDPATHQPLPNTKVV 56
RW++IA LPGRTDNE+KN WN+ IKKKLI G+DP TH LP +K +
Sbjct: 87 RWAQIAKHLPGRTDNEVKNFWNSCIKKKLIAQGLDPKTHNLLPASKTL 134
>Os05g0543600 Similar to Transcription factor MYB86 (Myb-related protein 86)
(AtMYB86) (Myb homolog 4) (AtMyb4)
Length = 280
Score = 70.1 bits (170), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 29/42 (69%), Positives = 37/42 (88%)
Query: 9 RWSKIAAKLPGRTDNEIKNHWNTHIKKKLIKMGIDPATHQPL 50
RWS+IA+ LPGRTDNEIKN WN+ +KKKL + G+DPATH+P+
Sbjct: 58 RWSQIASHLPGRTDNEIKNFWNSCLKKKLRQRGLDPATHKPI 99
>Os01g0285300 Myb, DNA-binding domain containing protein
Length = 428
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 31/42 (73%), Positives = 36/42 (85%)
Query: 9 RWSKIAAKLPGRTDNEIKNHWNTHIKKKLIKMGIDPATHQPL 50
RWS+IA +LPGRTDNEIKN WN+ IKKKL + GIDP TH+PL
Sbjct: 88 RWSQIATRLPGRTDNEIKNLWNSCIKKKLRQKGIDPNTHKPL 129
>Os03g0296000 Myb, DNA-binding domain containing protein
Length = 306
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 27/42 (64%), Positives = 35/42 (83%)
Query: 9 RWSKIAAKLPGRTDNEIKNHWNTHIKKKLIKMGIDPATHQPL 50
RWS IA +LPGRTDN++KN+WNT + KKL + GIDP TH+P+
Sbjct: 88 RWSLIANQLPGRTDNDVKNYWNTKLSKKLRQRGIDPITHRPI 129
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.312 0.131 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,483,264
Number of extensions: 247724
Number of successful extensions: 597
Number of sequences better than 1.0e-10: 30
Number of HSP's gapped: 594
Number of HSP's successfully gapped: 31
Length of query: 183
Length of database: 17,035,801
Length adjustment: 95
Effective length of query: 88
Effective length of database: 12,075,471
Effective search space: 1062641448
Effective search space used: 1062641448
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 153 (63.5 bits)