Os02g0579300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Transcription repressor MYB4 (Myb-related protein 4) (AtMYB4).
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Os02g0579300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Transcription repressor MYB4 (Myb-related protein 4) (AtMYB4).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 235.11 | 0.72 | 7.24 | 0.788 | 3.21 | -1.78 | 0.407 | -2.5 | -0.564 | 10.7 | 21.4 | 1529 | -- | -- |
| 245.46 | 0.73 | 7.16 | 1.31 | 3.2 | -1.48 | 0.359 | -- | -0.411 | 10.7 | 22 | 1512 | -- | -- |
| 235.77 | 0.715 | 7.24 | 0.809 | 3.21 | -1.74 | -- | -2.4 | -0.558 | 10.7 | 21.5 | 1530 | -- | -- |
| 246.09 | 0.731 | 7.15 | 1.34 | 3.2 | -1.48 | -- | -- | -0.397 | 10.7 | 22.01 | 1492 | -- | -- |
| 763.77 | 1.29 | 7.24 | 1.02 | -- | -2.58 | -- | -2.29 | -0.276 | -- | 25 | 2279 | -- | -- |
| 323.13 | 0.843 | 7.26 | 0.772 | 3.22 | -- | 0.35 | -- | -0.877 | 10.7 | -- | -- | -- | -- |
| 323.64 | 0.842 | 7.26 | 0.786 | 3.22 | -- | -- | -- | -0.876 | 10.7 | -- | -- | -- | -- |
| 757.56 | 1.28 | 7.18 | 1.64 | -- | -2.67 | -- | -- | -0.158 | -- | 25 | 2282 | -- | -- |
| 288.03 | 0.79 | 7.2 | -- | 3.27 | -1.1 | -- | -- | -0.609 | 10.6 | 22.4 | 1457 | -- | -- |
| 963.61 | 1.45 | 7.35 | 0.723 | -- | -- | -- | -- | -0.894 | -- | -- | -- | -- | -- |
| 339.93 | 0.862 | 7.28 | -- | 3.21 | -- | -- | -- | -0.963 | 10.7 | -- | -- | -- | -- |
| 676.49 | 1.21 | 7.18 | -- | -- | -2.51 | -- | -- | -0.149 | -- | 25 | 793 | -- | -- |
| 977.39 | 1.46 | 7.36 | -- | -- | -- | -- | -- | -0.974 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 234.92 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 1 | 1 |
| 14 | 240.81 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 17 | 5 |
| 16 | 241.03 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 18 | 241.10 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 16 | 10 |
| 29 | 241.59 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 21 | 2 |
| 48 | 242.18 | temperature | 25.0 | 1440 | < th | dose dependent | sin | 16 | NA |
| 66 | 242.71 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 73 | 242.81 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 74 | 242.81 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 21 | 1 |
| 95 | 243.58 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 4 | 20 |
| 97 | 243.64 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 1 | 1 |
| 117 | 243.91 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 23 | 3 |
| 119 | 243.93 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 23 | 3 |
| 120 | 244.00 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 9 | 22 |
| 122 | 244.03 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 20 | 5 |
| 180 | 245.01 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 20 | 3 |
| 181 | 245.01 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 20 | 3 |
| 186 | 245.09 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 20 | 3 |
| 319 | 246.77 | temperature | 20.0 | 270 | > th | dose dependent | sin | 10 | NA |
| 367 | 247.24 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 24 | 23 |
| 380 | 247.40 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 23 | 1 |
| 389 | 247.46 | temperature | 25.0 | 270 | < th | dose dependent | no | NA | NA |
| 432 | 247.96 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 15 | 23 |
| 481 | 248.42 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 20 | 7 |
| 531 | 248.71 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 21 | 23 |
| 539 | 248.78 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 16 | 23 |
| 542 | 248.81 | temperature | 25.0 | 1440 | < th | dose dependent | no | NA | NA |
| 551 | 248.86 | wind | 5.0 | 4320 | > th | dose dependent | rect. | 20 | 7 |
| 591 | 249.10 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 21 | 4 |
| 631 | 249.34 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 20 | 23 |
| 658 | 249.56 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 23 | 1 |
| 662 | 249.59 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 15 | 20 |
| 680 | 249.81 | temperature | 30.0 | 270 | < th | dose dependent | sin | 10 | NA |
| 822 | 250.87 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 18 | 13 |
| 836 | 250.96 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 863 | 251.20 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 17 | 16 |
| 929 | 251.69 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 15 | 22 |
| 975 | 252.13 | temperature | 20.0 | 1440 | > th | dose dependent | sin | 11 | NA |
| 994 | 252.24 | temperature | 10.0 | 1440 | > th | dose dependent | sin | 11 | NA |