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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0175400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Homeodomain-like containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.41 (0.0507) R2 : 0.404
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.48 (0.137) R2dC : 0.188 R2C : -0.114
β3 : -3.18 (0.185) R2dE : 0.497 R2E : 0.18
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.505 (0.107) R2dN8 : 0.0355 R2N8 : 0.00991
σ : 0.95
deviance : 416.31
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_____
C
peak time of C : 12.9
E
wheather : temperature
threshold : 5.099
memory length : 329
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 4.53
open length of G : 18.8

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
391.18 0.929 4.43 0.159 1.27 -2.74 -0.774 -3.94 0.45 12.1 8.846 268 5.03 19.1
400.91 0.933 4.38 0.605 1.52 -3.3 -1.34 -- 0.626 13.7 5.573 346 4.35 18.8
393.49 0.924 4.42 0.112 1.29 -2.72 -- -4.18 0.448 12 8.062 263 5.02 19.2
412.08 0.945 4.4 0.444 1.5 -3.23 -- -- 0.569 13.1 5.944 330 4.51 18.8
459.34 0.998 4.46 0.12 -- -2.46 -- -2.75 0.425 -- 1.536 539 4.84 18.8
479.33 1.03 4.41 -0.00856 1.93 -- 2.14 -- 0.317 7.14 -- -- -- --
489.82 1.04 4.41 0.0413 1.93 -- -- -- 0.316 7.47 -- -- -- --
461.11 1 4.42 0.382 -- -2.55 -- -- 0.502 -- 2.025 707 5.19 16.2
416.31 0.95 4.41 -- 1.48 -3.18 -- -- 0.505 12.9 5.099 329 4.53 18.8
688.55 1.23 4.46 0.0712 -- -- -- -- 0.347 -- -- -- -- --
489.87 1.04 4.41 -- 1.93 -- -- -- 0.311 7.47 -- -- -- --
464.39 1 4.44 -- -- -2.56 -- -- 0.452 -- 2.65 696 5.38 15.9
688.69 1.22 4.46 -- -- -- -- -- 0.339 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 391.83 temperature 10.0 270 > th dose dependent rect. 5 19
3 397.55 atmosphere 1000.0 90 > th dose independent rect. 3 13
7 398.25 temperature 10.0 90 > th dose dependent rect. 5 22
13 402.50 temperature 10.0 10 > th dose dependent rect. 6 21
24 406.89 atmosphere 1000.0 270 > th dose independent rect. 24 14
30 407.48 temperature 10.0 10 > th dose dependent rect. 16 11
37 408.02 temperature 10.0 270 > th dose dependent rect. 15 9
38 408.16 temperature 10.0 720 > th dose dependent rect. 5 12
45 409.32 temperature 25.0 720 < th dose independent rect. 2 14
76 412.13 temperature 10.0 10 > th dose dependent rect. 6 18
91 412.90 temperature 15.0 90 > th dose independent rect. 3 13
101 413.74 precipitation 0.1 10 < th dose independent rect. 3 13
102 413.74 precipitation 0.1 10 < th dose dependent rect. 3 13
107 414.03 atmosphere 1000.0 720 > th dose independent rect. 3 2
118 414.28 temperature 15.0 720 > th dose dependent rect. 14 3
141 414.91 wind 7.0 90 < th dose independent rect. 16 11
151 415.36 precipitation 0.1 10 < th dose independent rect. 16 11
152 415.36 precipitation 0.1 10 < th dose dependent rect. 16 11
157 415.52 wind 9.0 30 < th dose independent rect. 3 13
160 415.78 atmosphere 995.0 30 > th dose dependent rect. 3 13
162 415.83 temperature 15.0 30 > th dose independent rect. 16 11
169 416.11 temperature 25.0 720 < th dose independent sin 3 NA
171 416.13 temperature 15.0 270 > th dose independent rect. 1 13
194 416.83 radiation 30.0 30 < th dose independent rect. 16 11
195 416.86 temperature 20.0 720 > th dose independent rect. 15 2
202 416.87 atmosphere 1015.0 30 < th dose independent rect. 3 13
203 416.87 precipitation 0.1 270 < th dose independent rect. 1 13
204 416.87 precipitation 0.1 270 < th dose dependent rect. 1 13
206 416.94 radiation 1.0 270 < th dose independent sin 10 NA
224 417.26 temperature 10.0 720 > th dose dependent rect. 5 5
227 417.31 radiation 1.0 270 < th dose dependent sin 10 NA
241 417.60 temperature 15.0 270 > th dose independent rect. 14 10
242 417.63 radiation 1.0 270 < th dose dependent rect. 22 23
261 418.24 wind 9.0 270 < th dose independent rect. 14 11
276 418.75 radiation 40.0 10 < th dose dependent rect. 16 11
282 418.87 temperature 30.0 270 < th dose independent rect. 10 6
286 418.93 temperature 30.0 90 < th dose independent rect. 3 13
287 418.93 atmosphere 1015.0 270 < th dose independent rect. 24 14
297 419.05 precipitation 0.1 270 < th dose independent rect. 14 10
298 419.05 precipitation 0.1 270 < th dose dependent rect. 14 10
316 419.60 wind 1.0 270 > th dose independent rect. 14 10
322 419.77 wind 9.0 270 < th dose independent rect. 24 14
334 420.05 atmosphere 995.0 30 > th dose independent rect. 16 11
342 420.19 radiation 40.0 90 < th dose independent rect. 16 20
356 420.44 radiation 40.0 4320 < th dose independent rect. 16 14
358 420.45 atmosphere 995.0 270 > th dose dependent rect. 24 15
361 420.54 temperature 15.0 720 > th dose dependent rect. 11 6
390 421.04 radiation 1.0 720 < th dose dependent rect. 1 15
393 421.13 temperature 15.0 1440 > th dose independent rect. 7 18
407 421.64 atmosphere 1015.0 270 < th dose dependent rect. 5 5
438 422.35 temperature 30.0 30 < th dose independent rect. 12 18
445 422.47 wind 9.0 30 < th dose dependent rect. 3 13
472 422.83 temperature 25.0 720 < th dose independent rect. 8 6
489 423.01 radiation 1.0 720 < th dose dependent sin 4 NA
497 423.15 humidity 50.0 10 > th dose independent rect. 16 11
506 423.33 temperature 10.0 10 > th dose dependent rect. 6 14
525 423.65 radiation 1.0 720 > th dose independent rect. 15 2
537 423.90 radiation 1.0 270 < th dose dependent rect. 11 18
550 424.11 humidity 90.0 720 < th dose independent rect. 15 2
578 424.52 radiation 1.0 720 < th dose dependent rect. 3 3
579 424.53 radiation 1.0 270 < th dose dependent rect. 7 22
593 424.71 temperature 25.0 270 < th dose independent rect. 9 20
601 424.78 temperature 30.0 720 < th dose dependent rect. 3 13
626 425.14 wind 7.0 270 < th dose independent rect. 5 18
639 425.27 humidity 50.0 270 > th dose dependent rect. 18 11
645 425.36 atmosphere 995.0 720 > th dose independent rect. 17 22
656 425.51 atmosphere 1015.0 720 < th dose independent rect. 3 2
668 425.61 atmosphere 995.0 720 > th dose independent rect. 17 12
677 425.69 radiation 20.0 270 < th dose independent rect. 16 20
691 425.84 radiation 40.0 90 < th dose dependent rect. 6 21
693 425.87 humidity 50.0 90 > th dose independent rect. 3 13
698 425.90 humidity 90.0 270 < th dose independent rect. 15 17
701 425.91 radiation 10.0 720 < th dose independent rect. 17 17
702 425.91 radiation 10.0 270 < th dose dependent rect. 17 12
726 426.17 radiation 1.0 720 < th dose independent rect. 1 15
739 426.33 atmosphere 995.0 720 > th dose dependent rect. 3 2
743 426.37 atmosphere 1000.0 720 > th dose independent rect. 18 20
745 426.37 humidity 50.0 720 > th dose dependent rect. 3 2
750 426.42 radiation 1.0 270 < th dose independent rect. 11 18
752 426.42 radiation 1.0 270 < th dose independent rect. 22 23
754 426.46 temperature 30.0 270 < th dose dependent rect. 11 4
756 426.47 atmosphere 1015.0 30 < th dose independent rect. 16 11
758 426.51 radiation 30.0 270 < th dose dependent rect. 15 14
768 426.57 radiation 1.0 270 < th dose independent rect. 7 22
822 427.02 temperature 25.0 720 > th dose independent rect. 10 7
823 427.02 wind 7.0 270 < th dose independent rect. 5 12
828 427.04 radiation 1.0 270 < th dose independent rect. 17 12
857 427.23 temperature 30.0 270 < th dose independent rect. 17 12
873 427.31 atmosphere 1000.0 270 > th dose independent rect. 10 5
874 427.31 humidity 60.0 90 > th dose independent rect. 12 18
875 427.32 temperature 20.0 720 > th dose independent rect. 5 12
894 427.44 precipitation 0.1 270 < th dose independent rect. 23 6
895 427.44 humidity 50.0 270 > th dose independent rect. 24 14
897 427.44 precipitation 0.1 270 < th dose dependent rect. 23 6
913 427.54 temperature 20.0 720 > th dose independent rect. 13 6
914 427.54 humidity 50.0 10 > th dose dependent rect. 12 18
917 427.57 temperature 25.0 270 < th dose independent rect. 23 6
920 427.58 atmosphere 995.0 720 > th dose independent rect. 17 5
949 427.82 wind 5.0 720 < th dose independent rect. 5 5
951 427.83 radiation 1.0 720 > th dose independent rect. 5 12
957 427.88 atmosphere 1000.0 270 > th dose independent rect. 9 7
986 428.00 wind 9.0 270 < th dose dependent rect. 23 6
989 428.02 temperature 20.0 720 > th dose independent rect. 5 14