Os08g0486300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Myb, DNA-binding domain containing protein.
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Os08g0486300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Myb, DNA-binding domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 394.27 | 0.933 | 6.93 | 0.256 | 0.47 | 2.69 | -0.205 | 5.78 | -1.11 | 10.4 | 20.04 | 6299 | -- | -- |
| 430.25 | 0.966 | 6.68 | 0.955 | 0.497 | 1.44 | 0.122 | -- | -0.941 | 9.91 | 20 | 6295 | -- | -- |
| 393.19 | 0.924 | 6.94 | 0.331 | 0.469 | 3.06 | -- | 6.46 | -1.1 | 10.2 | 19.7 | 6399 | -- | -- |
| 429.95 | 0.966 | 6.68 | 0.948 | 0.497 | 1.44 | -- | -- | -0.932 | 10.3 | 20 | 6277 | -- | -- |
| 404.25 | 0.936 | 6.99 | 0.39 | -- | 3.35 | -- | 7.05 | -1.11 | -- | 19.3 | 6760 | -- | -- |
| 465.18 | 1.01 | 6.78 | -0.0565 | 0.518 | -- | -0.09 | -- | -1.36 | 10.4 | -- | -- | -- | -- |
| 465.21 | 1.01 | 6.78 | -0.0603 | 0.519 | -- | -- | -- | -1.36 | 10.4 | -- | -- | -- | -- |
| 442.48 | 0.98 | 6.68 | 0.911 | -- | 1.41 | -- | -- | -0.895 | -- | 20.95 | 6528 | -- | -- |
| 416.94 | 0.951 | 6.7 | -- | 0.297 | 0.974 | -- | -- | -1.02 | 9.13 | 23 | 817 | -- | -- |
| 481.66 | 1.03 | 6.79 | -0.0687 | -- | -- | -- | -- | -1.36 | -- | -- | -- | -- | -- |
| 465.31 | 1.01 | 6.78 | -- | 0.519 | -- | -- | -- | -1.36 | 10.4 | -- | -- | -- | -- |
| 421.32 | 0.956 | 6.71 | -- | -- | 1.07 | -- | -- | -1.01 | -- | 22.54 | 800 | -- | -- |
| 481.78 | 1.02 | 6.79 | -- | -- | -- | -- | -- | -1.36 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 387.79 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 2 | 391.87 | wind | 5.0 | 4320 | > th | dose independent | rect. | 20 | 5 |
| 4 | 392.54 | wind | 5.0 | 4320 | < th | dose independent | rect. | 20 | 5 |
| 7 | 394.78 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 22 | 1 |
| 8 | 395.09 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 1 | 2 |
| 12 | 395.74 | wind | 5.0 | 4320 | > th | dose dependent | rect. | 20 | 7 |
| 18 | 396.23 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 21 | 2 |
| 19 | 396.80 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 21 | 2 |
| 20 | 396.80 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 21 | 2 |
| 22 | 396.97 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 21 | 2 |
| 29 | 397.12 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 4 | 1 |
| 33 | 397.31 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 4 | 1 |
| 50 | 398.39 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 20 | 8 |
| 51 | 398.40 | wind | 7.0 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 54 | 398.49 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 20 | 8 |
| 55 | 398.70 | wind | 3.0 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 69 | 399.51 | wind | 3.0 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 86 | 400.37 | wind | 5.0 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 88 | 400.41 | temperature | 25.0 | 4320 | < th | dose dependent | rect. | 1 | 1 |
| 96 | 400.59 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 24 | 23 |
| 100 | 400.66 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 145 | 401.53 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 14 | 12 |
| 163 | 401.74 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 20 | 2 |
| 164 | 401.76 | temperature | 20.0 | 4320 | < th | dose independent | sin | 14 | NA |
| 171 | 401.94 | temperature | 20.0 | 4320 | > th | dose independent | sin | 14 | NA |
| 180 | 402.05 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 10 | 17 |
| 212 | 402.39 | temperature | 25.0 | 1440 | < th | dose dependent | sin | 16 | NA |
| 218 | 402.44 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 15 | 8 |
| 249 | 402.66 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 18 | 5 |
| 334 | 403.57 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 24 | 22 |
| 337 | 403.59 | temperature | 25.0 | 4320 | < th | dose dependent | rect. | 21 | 6 |
| 357 | 403.76 | wind | 5.0 | 4320 | > th | dose independent | rect. | 20 | 1 |
| 448 | 404.58 | wind | 3.0 | 14400 | > th | dose independent | rect. | 1 | 1 |
| 529 | 405.22 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 12 | 1 |
| 562 | 405.45 | wind | 3.0 | 14400 | < th | dose independent | rect. | 1 | 1 |
| 590 | 405.68 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 1 | 1 |
| 725 | 406.70 | wind | 1.0 | 14400 | > th | dose independent | rect. | 10 | 3 |
| 772 | 406.97 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 23 | 1 |
| 876 | 407.75 | temperature | 25.0 | 720 | < th | dose dependent | no | NA | NA |
| 930 | 408.08 | wind | 1.0 | 14400 | < th | dose independent | rect. | 10 | 3 |
| 965 | 408.26 | wind | 3.0 | 4320 | > th | dose dependent | rect. | 20 | 1 |