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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0258000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Typical P-type R2R3 Myb protein (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.48 (0.0602) R2 : 0.588
β1 : -3.89 (0.224) R2dD : 0.294 R2D : 0.156
β2 : 2.58 (0.149) R2dC : 0.29 R2C : 0.128
β3 : -2.96 (0.194) R2dE : 0.244 R2E : -0.0247
β4 : 3.11 (0.549) R2dD*C : 0.03 R2D*C : -0.00582
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.971 (0.13) R2dN8 : 0.0684 R2N8 : -0.0299
σ : 1.12
deviance : 579.91
__
_____
C
peak time of C : 11
E
wheather : humidity
threshold : 72.22
memory length : 1221
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
578 1.13 6.49 -4.03 2.55 -3.01 2.97 0.987 -1 11 72 1223 -- --
579.91 1.12 6.48 -3.89 2.58 -2.96 3.11 -- -0.971 11 72.22 1221 -- --
612.25 1.15 6.5 -4.07 2.61 -3.04 -- 2.19 -1.03 11 72.41 1200 -- --
621.48 1.16 6.46 -3.75 2.53 -2.9 -- -- -0.939 11 72.39 1221 -- --
870.79 1.37 6.52 -3.86 -- -2.61 -- 0.559 -0.948 -- 72 1474 -- --
871.51 1.38 6.4 -3.3 1.95 -- 2.71 -- -0.584 10.4 -- -- -- --
901.25 1.41 6.39 -3.2 1.94 -- -- -- -0.577 10.3 -- -- -- --
866.35 1.37 6.52 -3.65 -- -2.77 -- -- -0.948 -- 74.72 1483 -- --
965.24 1.45 6.43 -- 2.1 -3.54 -- -- -0.72 10.8 86 1423 -- --
1130.13 1.57 6.44 -3.23 -- -- -- -- -0.583 -- -- -- -- --
1170.43 1.6 6.31 -- 1.96 -- -- -- -0.221 10.4 -- -- -- --
1176.58 1.6 6.47 -- -- -4.08 -- -- -0.71 -- 85.99 1559 -- --
1404.68 1.75 6.36 -- -- -- -- -- -0.225 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 579.16 humidity 70 14400 < th dose dependent rect. 18 14
2 580.88 humidity 70 14400 < th dose dependent rect. 18 1
3 581.14 humidity 70 14400 < th dose independent rect. 19 13
5 582.46 humidity 70 14400 < th dose dependent rect. 18 4
16 585.84 humidity 60 14400 < th dose dependent rect. 16 17
17 587.88 humidity 60 14400 < th dose dependent rect. 16 4
31 590.37 humidity 70 720 > th dose dependent rect. 7 16
46 593.75 humidity 60 14400 < th dose independent rect. 17 14
48 593.79 humidity 60 14400 < th dose independent rect. 17 5
61 595.54 humidity 80 720 > th dose independent rect. 7 15
63 595.93 humidity 70 14400 < th dose independent rect. 19 3
72 596.02 humidity 50 14400 < th dose independent rect. 16 19
74 596.04 temperature 20 1440 > th dose dependent rect. 13 1
75 596.05 temperature 25 1440 > th dose dependent rect. 13 4
77 596.32 temperature 20 1440 > th dose dependent rect. 11 6
90 598.07 humidity 50 14400 > th dose independent rect. 16 18
99 598.74 humidity 50 720 > th dose dependent rect. 16 7
106 599.22 humidity 90 720 < th dose dependent rect. 16 7
109 599.60 humidity 60 14400 > th dose independent rect. 17 4
110 599.64 humidity 60 14400 > th dose independent rect. 17 7
114 599.71 humidity 70 14400 > th dose independent rect. 19 13
117 599.86 humidity 60 14400 > th dose independent rect. 17 10
121 599.93 humidity 60 14400 > th dose independent rect. 17 14
159 600.93 temperature 25 1440 > th dose dependent rect. 7 11
165 601.21 temperature 25 1440 > th dose dependent sin 21 NA
171 601.40 humidity 50 14400 < th dose dependent rect. 16 19
172 601.46 humidity 70 720 > th dose independent sin 12 NA
201 602.24 humidity 60 720 > th dose dependent rect. 17 4
268 603.53 humidity 80 1440 < th dose independent rect. 7 8
275 603.58 humidity 60 1440 > th dose dependent rect. 11 2
355 604.96 humidity 50 1440 > th dose dependent sin 22 NA
374 605.30 humidity 90 1440 < th dose dependent rect. 7 14
415 605.73 temperature 25 1440 > th dose dependent rect. 11 22
496 606.90 humidity 70 14400 > th dose independent rect. 19 2
515 607.14 temperature 25 1440 > th dose dependent rect. 13 20
537 607.30 temperature 25 1440 > th dose dependent rect. 13 23
557 607.51 humidity 70 14400 > th dose independent rect. 19 5
572 607.81 temperature 25 1440 > th dose dependent no NA NA
576 607.83 humidity 70 14400 > th dose independent rect. 19 8
579 607.90 humidity 70 14400 > th dose independent rect. 19 10
621 608.47 humidity 70 720 < th dose independent sin 12 NA
638 608.79 humidity 80 720 < th dose independent rect. 7 14
656 608.85 humidity 70 720 > th dose dependent sin 21 NA
658 608.87 humidity 90 1440 < th dose dependent sin 22 NA
665 609.02 humidity 60 720 > th dose dependent sin 18 NA
833 612.00 humidity 80 1440 > th dose independent rect. 7 8
848 612.21 humidity 80 1440 < th dose independent sin 1 NA
856 612.34 wind 9 43200 > th dose dependent rect. 19 3
914 613.40 humidity 90 720 < th dose dependent sin 17 NA
918 613.53 wind 7 43200 > th dose dependent sin 15 NA
943 614.02 humidity 70 720 > th dose independent rect. 15 8
966 614.27 humidity 80 43200 < th dose independent rect. 22 1
980 614.39 wind 7 43200 > th dose independent rect. 15 23
996 614.60 wind 9 43200 < th dose independent rect. 19 3