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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0428200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Typical P-type R2R3 Myb protein (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.26 (0.0794) R2 : 0.698
β1 : 5.81 (0.296) R2dD : 0.282 R2D : 0.244
β2 : 1.78 (0.19) R2dC : 0.0581 R2C : 0.0131
β3 : -7.86 (0.549) R2dE : 0.2 R2E : 0.0984
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -23.6 (1.98) R2dD*E : 0.143 R2D*E : -0.102
γ1 : 2.24 (0.17) R2dN8 : 0.168 R2N8 : 0.074
σ : 1.45
deviance : 970.65
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_____
C
peak time of C : 9.85
E
wheather : radiation
threshold : 18.04
memory length : 1543
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 16.1
open length of G : 0.803

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
962.04 1.46 5.26 5.79 1.79 -8.19 1.98 -25 2.3 9.88 18.51 1504 16.1 0.966
1159.81 1.59 5.31 6.68 1.28 -5.97 1.46 -- 2.74 9.98 15.59 1149 16 1.02
970.65 1.45 5.26 5.81 1.78 -7.86 -- -23.6 2.24 9.85 18.04 1543 16.1 0.803
1112.63 1.55 5.3 7.14 1.51 -3.57 -- -- 2.89 9.68 9.999 1083 16.1 0.833
1145.14 1.58 5.25 5.67 -- -7.38 -- -23.3 2.34 -- 17.93 1664 16.1 0.9
1388.32 1.75 5.33 6.89 2.07 -- 2.28 -- 2.61 10.5 -- -- -- --
1409.56 1.76 5.33 6.98 2.06 -- -- -- 2.61 10.4 -- -- -- --
1165.97 1.59 5.33 7.37 -- -2.85 -- -- 2.88 -- 4.522e-06 822 15.9 1.15
1525.56 1.82 5.15 -- 1.56 -7.36 -- -- 2.72 8.83 0.17 6763 16.9 1.82
1669.52 1.91 5.38 6.95 -- -- -- -- 2.6 -- -- -- -- --
2694.08 2.43 5.5 -- 2.02 -- -- -- 1.83 10.2 -- -- -- --
1474.81 1.79 5.09 -- -- -7.96 -- -- 3.1 -- -4.162 17881 17.3 2.06
2942.33 2.53 5.56 -- -- -- -- -- 1.83 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 955.84 wind 9 43200 < th dose independent rect. 17 14
3 959.28 wind 9 43200 > th dose independent rect. 17 14
4 960.55 wind 7 43200 > th dose dependent rect. 18 13
6 961.71 wind 7 43200 > th dose dependent rect. 17 15
23 974.74 radiation 20 1440 < th dose independent rect. 16 1
27 974.93 radiation 20 1440 < th dose independent rect. 16 8
34 976.14 radiation 20 1440 < th dose independent rect. 16 13
43 977.29 wind 9 43200 > th dose independent rect. 20 10
55 978.94 wind 9 43200 < th dose independent rect. 20 10
57 979.18 radiation 20 1440 > th dose independent rect. 16 1
82 982.44 wind 7 43200 > th dose dependent rect. 18 7
88 982.84 wind 7 43200 > th dose dependent sin 12 NA
93 983.94 radiation 20 1440 > th dose dependent rect. 16 1
114 985.04 wind 9 43200 > th dose dependent rect. 20 10
119 985.56 wind 7 43200 > th dose independent sin 11 NA
120 985.65 wind 9 43200 < th dose independent sin 12 NA
145 988.83 wind 9 43200 < th dose independent rect. 17 7
146 988.83 temperature 30 1440 > th dose dependent rect. 12 5
148 988.93 temperature 30 1440 > th dose dependent rect. 13 2
205 991.01 temperature 30 1440 > th dose dependent sin 19 NA
206 991.04 wind 9 43200 > th dose independent rect. 17 7
268 992.11 temperature 30 1440 > th dose dependent no NA NA
383 992.59 temperature 30 1440 > th dose dependent rect. 16 23
481 997.53 wind 9 43200 < th dose independent rect. 19 5
591 1001.88 wind 5 43200 > th dose independent rect. 17 22
609 1003.47 temperature 30 1440 > th dose dependent sin 10 NA
619 1004.02 temperature 30 1440 > th dose independent rect. 16 3
644 1004.77 wind 5 43200 < th dose independent rect. 17 22
681 1006.19 temperature 30 1440 < th dose independent rect. 16 8
684 1006.30 temperature 30 1440 < th dose independent rect. 16 12
693 1006.53 temperature 30 1440 < th dose independent rect. 16 4
695 1006.58 temperature 30 1440 < th dose independent rect. 16 16
702 1006.72 temperature 30 1440 < th dose independent rect. 18 17
709 1007.02 temperature 30 1440 > th dose independent rect. 16 19
782 1009.78 temperature 10 1440 > th dose dependent rect. 16 2
801 1010.50 humidity 60 14400 < th dose dependent rect. 17 1
806 1010.64 radiation 30 4320 < th dose independent rect. 15 17
885 1013.10 temperature 30 1440 < th dose independent sin 10 NA
931 1014.15 temperature 30 1440 > th dose independent sin 10 NA