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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0543600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Transcription factor MYB86 (Myb-related protein 86) (AtMYB86) (Myb homolog 4) (AtMyb4).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.97 (0.042) R2 : 0.0979
β1 : 0.602 (0.157) R2dD : 0.0333 R2D : -0.011
β2 : -- (--) R2dC : -- R2C : --
β3 : 33.9 (4.99) R2dE : 3.86 R2E : -3.84
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 164 (24) R2dD*E : 3.92 R2D*E : -3.77
γ1 : -0.0599 (0.0873) R2dN8 : 0.00126 R2N8 : -0.00487
σ : 0.765
deviance : 269.66
__
_____
C
peak time of C : --
E
wheather : wind
threshold : 2.951
memory length : 70
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 4.11
open length of G : 1.13

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
271.23 0.774 2.97 0.592 0.0284 33.7 -0.38 163 -0.0632 0.863 3.029 89 4.02 1.03
842.28 1.35 2.96 2.34 0.997 18.1 3.83 -- 0.467 18.6 3.661 7 6.01 1.88
271.56 0.768 2.97 0.605 0.047 33.7 -- 163 -0.0593 6.04 3.065 88 4.07 0.95
295.2 0.805 2.9 0.273 0.113 0.378 -- -- -0.0699 5.57 3.942 2064 0.663 4.17
269.66 0.765 2.97 0.602 -- 33.9 -- 164 -0.0599 -- 2.951 70 4.11 1.13
295.08 0.805 2.9 0.258 0.0897 -- 0.474 -- -0.0706 7.86 -- -- -- --
295.44 0.805 2.9 0.267 0.118 -- -- -- -0.0728 5.45 -- -- -- --
292.15 0.796 2.91 0.268 -- 1.34 -- -- -0.0991 -- 0.9793 91 4.35 2.27
295.03 0.8 2.93 -- 0.0775 -0.324 -- -- -0.133 8.26 2.784 4766 15.4 19
296.17 0.804 2.9 0.271 -- -- -- -- -0.0699 -- -- -- -- --
297.33 0.807 2.91 -- 0.123 -- -- -- -0.103 5.36 -- -- -- --
292.91 0.797 2.94 -- -- -0.448 -- -- -0.122 -- 2.895 4683 18.3 19.9
298.12 0.806 2.91 -- -- -- -- -- -0.1 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 271.52 wind 3.0 90 > th dose dependent rect. 4 1
2 273.75 temperature 20.0 90 < th dose dependent rect. 4 1
3 274.39 wind 3.0 90 > th dose independent rect. 4 1
7 275.57 temperature 20.0 90 < th dose dependent rect. 4 16
24 276.86 temperature 20.0 10 < th dose dependent rect. 5 1
26 277.09 temperature 20.0 10 < th dose dependent rect. 5 16
40 277.87 atmosphere 1000.0 10 < th dose dependent rect. 8 3
44 277.89 atmosphere 1000.0 90 < th dose dependent rect. 8 1
48 277.91 atmosphere 1000.0 10 < th dose dependent rect. 10 1
83 278.34 atmosphere 1005.0 90 < th dose independent rect. 8 1
91 278.55 temperature 20.0 10 < th dose independent rect. 5 1
107 278.74 wind 1.0 90 < th dose dependent rect. 4 1
112 278.87 atmosphere 1005.0 10 < th dose independent rect. 8 2
113 278.88 wind 7.0 1440 < th dose independent rect. 6 1
115 278.88 temperature 10.0 1440 > th dose independent rect. 6 1
118 278.88 temperature 30.0 1440 < th dose independent rect. 6 1
122 278.88 humidity 50.0 1440 > th dose independent rect. 6 1
127 278.88 atmosphere 995.0 1440 > th dose independent rect. 6 1
128 278.88 atmosphere 1015.0 1440 < th dose independent rect. 6 1
129 278.88 radiation 40.0 1440 < th dose independent rect. 6 1
133 278.88 temperature 10.0 1440 > th dose independent rect. 7 23
171 279.16 atmosphere 1000.0 30 > th dose independent rect. 6 23
179 279.28 atmosphere 1005.0 30 > th dose dependent rect. 5 1
198 279.62 wind 1.0 90 < th dose independent rect. 4 1
199 279.73 radiation 1.0 90 < th dose independent rect. 5 1
219 280.61 radiation 1.0 90 < th dose dependent rect. 5 1
226 281.00 temperature 20.0 90 < th dose dependent sin 0 NA
238 281.29 temperature 20.0 30 < th dose independent rect. 5 15
262 281.37 wind 1.0 90 < th dose dependent rect. 13 8
324 282.27 atmosphere 1000.0 90 > th dose independent rect. 5 1
327 282.28 atmosphere 1005.0 90 < th dose independent rect. 5 5
369 282.58 wind 1.0 90 < th dose independent rect. 13 8
374 282.65 humidity 80.0 90 > th dose independent rect. 5 1
423 283.22 wind 1.0 10 < th dose dependent rect. 12 6
431 283.27 wind 1.0 10 < th dose dependent rect. 12 4
473 283.49 wind 1.0 90 < th dose dependent rect. 4 17
474 283.53 radiation 10.0 10 < th dose dependent rect. 5 2
475 283.53 wind 1.0 10 < th dose dependent rect. 6 9
476 283.54 wind 1.0 10 < th dose independent rect. 12 6
484 283.59 wind 1.0 10 < th dose independent rect. 12 4
496 283.63 wind 1.0 90 < th dose dependent rect. 4 11
544 283.96 precipitation 0.1 90 < th dose independent rect. 5 1
545 283.96 precipitation 0.1 90 < th dose dependent rect. 5 1
562 284.08 wind 1.0 720 < th dose dependent rect. 20 2
571 284.14 wind 7.0 90 < th dose independent rect. 5 1
573 284.14 temperature 10.0 90 > th dose independent rect. 5 1
576 284.14 humidity 50.0 90 > th dose independent rect. 5 1
580 284.14 atmosphere 1010.0 90 < th dose independent rect. 5 1
586 284.14 temperature 10.0 90 > th dose independent rect. 6 23
588 284.15 wind 1.0 90 < th dose dependent rect. 12 1
607 284.24 humidity 90.0 10 > th dose dependent rect. 6 1
618 284.32 radiation 10.0 10 < th dose dependent rect. 5 5
628 284.36 wind 1.0 10 < th dose independent rect. 6 9
631 284.39 wind 9.0 90 < th dose independent rect. 6 23
634 284.44 wind 1.0 90 < th dose independent rect. 12 1
642 284.47 wind 1.0 90 < th dose independent rect. 12 3
657 284.52 atmosphere 1000.0 270 > th dose independent rect. 6 9
666 284.56 wind 1.0 90 < th dose dependent rect. 12 3
671 284.59 humidity 90.0 90 < th dose independent rect. 4 1
691 284.65 wind 1.0 10 < th dose independent rect. 14 4
700 284.66 humidity 50.0 90 > th dose dependent rect. 5 1
701 284.66 wind 1.0 10 < th dose dependent rect. 14 4
750 284.78 temperature 20.0 270 < th dose independent rect. 2 1
819 284.96 wind 1.0 720 < th dose independent rect. 20 1
856 285.07 temperature 10.0 1440 > th dose independent rect. 23 7
859 285.07 temperature 30.0 1440 < th dose independent rect. 23 7
863 285.07 humidity 50.0 1440 > th dose independent rect. 23 7
872 285.07 atmosphere 995.0 1440 > th dose independent rect. 23 7
873 285.07 radiation 20.0 1440 < th dose independent rect. 23 7
882 285.07 temperature 10.0 1440 > th dose independent rect. 6 17
895 285.12 wind 9.0 1440 < th dose independent rect. 23 7
968 285.28 atmosphere 1000.0 270 > th dose independent rect. 6 5
993 285.29 atmosphere 1000.0 10 > th dose independent rect. 7 10