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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0548000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Myb, DNA-binding domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.19 (0.0417) R2 : 0.536
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.55 (0.104) R2dC : 0.255 R2C : 0.101
β3 : -1.86 (0.192) R2dE : 0.122 R2E : 0.0666
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 1.11 (0.0922) R2dN8 : 0.218 R2N8 : 0.27
σ : 0.769
deviance : 272.56
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_____
C
peak time of C : 0.443
E
wheather : temperature
threshold : 25.1
memory length : 40
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
253.69 0.748 4.19 -0.483 1.6 -2.28 1.42 -1.33 1.04 0.561 24.75 51 -- --
256.35 0.746 4.21 -0.615 1.64 -2.14 1.31 -- 1.01 0.613 25.26 60 -- --
260.28 0.751 4.21 -0.672 1.58 -2.21 -- -0.454 1.04 0.454 24.44 56 -- --
260.3 0.751 4.22 -0.716 1.59 -2.15 -- -- 0.998 0.468 24.85 50 -- --
305.7 0.814 4.2 -0.749 -- -2.65 -- -0.919 0.944 -- 30.17 927 -- --
323.22 0.843 4.12 -0.175 1.21 -- 0.964 -- 1.41 0.213 -- -- -- --
327.18 0.847 4.12 -0.212 1.21 -- -- -- 1.41 0.112 -- -- -- --
306.15 0.815 4.21 -0.924 -- -2.64 -- -- 0.921 -- 30.96 927 -- --
272.56 0.769 4.19 -- 1.55 -1.86 -- -- 1.11 0.443 25.1 40 -- --
419.05 0.957 4.1 -0.173 -- -- -- -- 1.42 -- -- -- -- --
328.37 0.848 4.12 -- 1.21 -- -- -- 1.43 0.102 -- -- -- --
326 0.841 4.17 -- -- -2.28 -- -- 1.11 -- 32.4 926 -- --
419.84 0.956 4.09 -- -- -- -- -- 1.44 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 248.93 temperature 30 720 < th dose dependent sin 16 NA
2 248.93 temperature 30 720 < th dose dependent rect. 12 18
4 249.31 temperature 10 720 > th dose dependent rect. 14 15
7 249.36 temperature 30 720 < th dose dependent rect. 12 15
9 249.65 temperature 15 720 > th dose dependent sin 16 NA
13 249.85 temperature 25 90 < th dose dependent rect. 12 23
24 250.10 temperature 25 270 < th dose dependent rect. 11 21
34 250.63 temperature 15 720 > th dose dependent rect. 11 18
78 252.26 temperature 25 30 < th dose dependent rect. 5 23
155 253.87 temperature 25 30 < th dose dependent rect. 1 23
159 253.93 temperature 25 30 < th dose dependent rect. 23 23
161 253.97 temperature 25 30 < th dose dependent no NA NA
163 253.97 temperature 25 30 < th dose dependent rect. 15 23
165 253.98 temperature 25 90 < th dose dependent rect. 3 23
167 253.99 temperature 25 30 < th dose dependent rect. 17 23
172 254.04 temperature 25 30 < th dose dependent rect. 9 23
173 254.07 temperature 25 30 < th dose dependent rect. 19 23
174 254.09 temperature 25 30 < th dose dependent rect. 7 23
184 254.23 temperature 25 30 < th dose dependent rect. 21 23
448 257.41 temperature 30 720 < th dose dependent rect. 5 20
530 258.25 temperature 30 720 < th dose dependent rect. 3 21
619 258.82 temperature 30 720 < th dose dependent rect. 1 23
652 259.06 temperature 25 720 > th dose independent sin 19 NA
687 259.34 temperature 25 720 < th dose independent rect. 11 12
784 259.90 temperature 25 720 < th dose independent sin 19 NA
800 259.96 temperature 25 720 > th dose independent rect. 14 7
807 260.00 temperature 25 720 > th dose independent rect. 10 13
823 260.05 temperature 25 1440 < th dose dependent rect. 4 1
831 260.08 temperature 10 720 > th dose dependent rect. 24 23
833 260.10 temperature 25 720 > th dose independent rect. 13 9
891 260.34 temperature 10 1440 > th dose dependent rect. 4 1
917 260.41 temperature 10 1440 > th dose dependent rect. 22 1
959 260.56 temperature 30 1440 < th dose dependent rect. 22 1