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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0140100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Myb, DNA-binding domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.87 (0.433) R2 : 0.437
β1 : 11.4 (4.01) R2dD : 2.16 R2D : -4.26
β2 : 0.663 (0.2) R2dC : 0.0148 R2C : -0.627
β3 : -14.8 (4.33) R2dE : 5.33 R2E : -7.3
β4 : -2.52 (0.824) R2dD*C : 0.0118 R2D*C : -0.655
β5 : 159 (40.6) R2dD*E : 10.3 R2D*E : -6.04
γ1 : -0.657 (0.164) R2dN8 : 0.0272 R2N8 : -0.798
σ : 1.43
deviance : 928.59
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_____
C
peak time of C : 8.18
E
wheather : temperature
threshold : 30.2
memory length : 777
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 18
open length of G : 1.89

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
928.59 1.43 2.87 11.4 0.663 -14.8 -2.52 159 -0.657 8.18 30.2 777 18 1.89
1114.61 1.57 4.59 -4.1 1.23 1.88 -1.04 -- -0.9 6.54 30.2 777 18 1.89
947.67 1.43 2.84 11.7 0.675 -15 -- 161 -0.662 7.89 30.3 815 17.9 6.01
960.74 1.44 4.53 -4.39 0.959 1.98 -- -- -0.65 7.2 31.98 1194 17.7 3.45
970.98 1.45 2.78 12.3 -- -15.1 -- 162 -0.64 -- 30.5 839 17.7 11.9
1124.33 1.57 4.59 -4.07 1.15 -- -1.27 -- -0.917 6.65 -- -- -- --
1127.42 1.57 4.59 -4.1 1.15 -- -- -- -0.915 6.23 -- -- -- --
1002.8 1.47 4.55 -4.44 -- 2.22 -- -- -0.584 -- 29.37 1101 17.6 5.69
1465.24 1.78 4.45 -- 0.942 1.68 -- -- -0.218 7.26 31.01 1157 17.7 4.02
1196.41 1.62 4.61 -4.07 -- -- -- -- -0.89 -- -- -- -- --
1570.27 1.85 4.49 -- 1.1 -- -- -- -0.459 6.43 -- -- -- --
1508.7 1.81 4.46 -- -- 1.73 -- -- -0.198 -- 30.4 1116 17.8 4.9
1632.84 1.89 4.51 -- -- -- -- -- -0.439 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 933.12 temperature 30 720 > th dose dependent rect. 18 1
15 937.20 humidity 50 1440 < th dose independent rect. 16 1
16 937.70 humidity 50 1440 < th dose dependent rect. 16 1
47 948.67 humidity 70 720 < th dose dependent rect. 18 2
61 949.99 humidity 70 720 < th dose independent rect. 18 13
62 950.02 humidity 70 720 < th dose independent rect. 18 2
75 952.72 humidity 50 1440 > th dose independent rect. 16 1
77 952.99 wind 1 90 < th dose independent rect. 4 1
117 954.72 wind 1 90 < th dose dependent rect. 4 1
118 955.06 temperature 30 720 > th dose independent rect. 18 1
162 959.50 humidity 60 1440 > th dose independent rect. 17 11
183 959.79 humidity 60 1440 > th dose independent rect. 17 8
213 960.21 humidity 60 1440 > th dose independent rect. 17 14
380 968.45 humidity 50 4320 > th dose independent rect. 13 4
446 969.59 humidity 60 1440 < th dose independent sin 12 NA
462 969.79 humidity 70 1440 < th dose dependent sin 12 NA
464 969.97 temperature 30 1440 < th dose independent rect. 18 6
465 969.98 radiation 1 1440 > th dose dependent rect. 18 1
492 970.48 radiation 1 720 > th dose independent rect. 18 11
494 970.63 temperature 30 1440 < th dose independent rect. 18 2
495 970.66 humidity 60 1440 > th dose independent sin 12 NA
496 970.68 temperature 30 1440 < th dose independent rect. 18 8
500 971.01 radiation 1 720 > th dose independent rect. 18 1
544 971.49 temperature 30 1440 < th dose independent rect. 18 10
615 973.29 temperature 30 1440 < th dose independent rect. 18 14
634 973.93 humidity 50 4320 < th dose independent rect. 15 19
803 975.12 temperature 30 1440 > th dose dependent sin 12 NA
865 975.89 humidity 50 4320 < th dose independent rect. 11 6
971 977.73 humidity 50 4320 < th dose independent rect. 13 4
977 977.96 humidity 50 4320 < th dose independent rect. 15 23
982 978.26 humidity 90 90 > th dose dependent rect. 4 1