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Os09g0538400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to P-type R2R3 Myb protein (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.38 (0.036) R2 : 0.863
β1 : -- (--) R2dD : -- R2D : --
β2 : 12.4 (0.281) R2dC : 5.62 R2C : -2.26
β3 : 8.97 (0.273) R2dE : 3.1 R2E : -4.75
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.265 (0.0746) R2dN8 : 0.00502 R2N8 : -0.00376
σ : 0.651
deviance : 195.61
__
_____
C
peak time of C : 18.1
E
wheather : temperature
threshold : -3.724
memory length : 351
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 21.4
open length of G : 10.2

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
196.96 0.659 8.37 0.354 8.9 5.59 0.72 -1.76 0.251 18.6 8.725 277 22.8 9.25
196.98 0.654 8.36 0.513 9.09 5.75 1.88 -- 0.269 18.6 7.965 280 22.7 9.28
193.32 0.648 8.35 0.392 9.24 5.9 -- -1.82 0.323 18.5 6.187 300 22.5 9.28
201.43 0.661 8.35 0.54 9.58 6.12 -- -- 0.33 18.5 5.59 293 22.5 9.48
595.65 1.14 8.16 -2.11 -- 5.54 -- -2.93 -0.158 -- -11.83 2575 6.12 9.17
437.5 0.981 8.13 0.926 4.15 -- 1.34 -- 0.807 19.8 -- -- -- --
442.68 0.985 8.13 0.89 4.15 -- -- -- 0.808 19.9 -- -- -- --
333.06 0.85 8.22 -0.0928 -- 6.67 -- -- 0.172 -- -34.58 2465 3.45 14.6
195.61 0.651 8.38 -- 12.4 8.97 -- -- 0.265 18.1 -3.724 351 21.4 10.2
1379.12 1.74 8.03 0.843 -- -- -- -- 0.752 -- -- -- -- --
463.57 1.01 8.15 -- 4.15 -- -- -- 0.709 19.9 -- -- -- --
283.56 0.784 8.19 -- -- 5.41 -- -- 0.215 -- -110.6 2578 2.54 14.5
1397.86 1.75 8.05 -- -- -- -- -- 0.658 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 203.32 temperature 10.0 270 > th dose dependent rect. 23 9
2 203.32 temperature 10.0 270 > th dose dependent rect. 12 20
24 232.98 temperature 10.0 10 > th dose dependent rect. 14 19
34 237.81 temperature 20.0 270 > th dose independent rect. 12 20
39 240.07 temperature 10.0 270 > th dose dependent rect. 2 16
40 240.14 wind 9.0 270 < th dose independent rect. 13 4
42 240.55 temperature 10.0 270 > th dose independent rect. 13 4
44 240.55 atmosphere 1010.0 270 < th dose independent rect. 13 4
46 240.55 temperature 10.0 270 > th dose independent rect. 17 20
47 240.74 precipitation 0.1 270 < th dose independent rect. 17 20
48 240.74 precipitation 0.1 270 < th dose dependent rect. 17 20
52 241.74 precipitation 0.1 270 < th dose independent rect. 13 4
53 241.74 precipitation 0.1 270 < th dose dependent rect. 13 4
55 242.19 wind 1.0 270 > th dose independent rect. 13 4
60 242.98 atmosphere 995.0 270 > th dose independent rect. 17 20
61 243.02 precipitation 0.1 270 < th dose independent rect. 18 18
62 243.02 precipitation 0.1 270 < th dose dependent rect. 18 18
67 243.83 wind 9.0 270 < th dose independent rect. 12 6
69 244.04 precipitation 0.1 270 < th dose independent rect. 12 6
70 244.04 precipitation 0.1 270 < th dose dependent rect. 12 6
74 244.56 atmosphere 995.0 270 > th dose independent rect. 18 18
75 244.65 temperature 10.0 270 > th dose independent rect. 12 6
77 244.65 atmosphere 1015.0 270 < th dose independent rect. 12 6
78 244.65 temperature 10.0 270 > th dose independent rect. 18 18
80 244.89 wind 9.0 270 < th dose independent rect. 17 20
84 245.68 wind 1.0 270 > th dose independent rect. 12 6
87 246.24 atmosphere 995.0 270 > th dose independent rect. 13 4
97 247.28 wind 9.0 270 < th dose independent rect. 13 18
98 247.48 temperature 10.0 270 > th dose independent rect. 7 6
99 247.48 atmosphere 995.0 270 > th dose independent rect. 7 6
100 247.48 atmosphere 1015.0 270 < th dose independent rect. 7 6
101 247.48 temperature 10.0 270 > th dose independent rect. 13 18
102 247.63 wind 9.0 270 < th dose independent rect. 18 18
104 247.73 precipitation 0.1 270 < th dose independent rect. 7 6
105 247.73 precipitation 0.1 270 < th dose dependent rect. 7 6
106 247.74 humidity 50.0 270 > th dose dependent rect. 22 10
113 247.98 temperature 10.0 270 > th dose dependent rect. 13 4
117 248.29 temperature 10.0 270 > th dose dependent rect. 12 6
119 248.84 radiation 40.0 90 < th dose independent rect. 13 6
126 250.44 radiation 1.0 270 > th dose independent rect. 13 4
127 250.44 humidity 70.0 270 > th dose independent rect. 23 9
129 250.69 wind 9.0 270 < th dose independent rect. 7 6
131 250.74 radiation 30.0 270 < th dose independent rect. 23 9
132 250.91 radiation 1.0 270 > th dose independent rect. 13 17
140 251.64 temperature 30.0 270 < th dose independent rect. 18 18
141 251.76 wind 1.0 270 > th dose independent rect. 17 20
144 252.42 humidity 50.0 270 > th dose independent rect. 17 20
147 252.68 wind 1.0 270 > th dose independent rect. 18 18
148 252.72 precipitation 0.1 270 < th dose independent rect. 13 18
149 252.72 precipitation 0.1 270 < th dose dependent rect. 13 18
158 253.25 radiation 1.0 270 > th dose independent rect. 7 6
162 253.43 atmosphere 995.0 270 > th dose independent rect. 12 6
165 254.01 wind 1.0 270 > th dose independent rect. 7 6
166 254.35 humidity 50.0 270 > th dose independent rect. 18 18
170 254.63 wind 9.0 270 < th dose independent rect. 14 2
178 255.08 temperature 10.0 270 > th dose independent rect. 23 9
179 255.08 temperature 30.0 270 < th dose independent rect. 23 9
180 255.08 humidity 50.0 270 > th dose independent rect. 23 9
182 255.08 atmosphere 995.0 270 > th dose independent rect. 23 9
183 255.08 temperature 10.0 270 > th dose independent rect. 8 15
184 255.14 wind 9.0 270 < th dose independent rect. 23 9
187 255.33 temperature 10.0 270 > th dose independent rect. 14 2
189 255.33 atmosphere 1010.0 270 < th dose independent rect. 14 2
191 255.33 temperature 10.0 270 > th dose independent rect. 16 22
192 255.38 radiation 1.0 270 > th dose independent rect. 13 6
202 255.44 precipitation 0.1 270 < th dose independent rect. 14 2
203 255.44 precipitation 0.1 270 < th dose dependent rect. 14 2
210 255.71 atmosphere 1015.0 270 < th dose independent rect. 23 9
220 256.08 wind 1.0 270 > th dose independent rect. 14 2
235 256.89 atmosphere 995.0 270 > th dose independent rect. 13 18
245 257.10 radiation 1.0 90 > th dose independent rect. 9 5
250 257.53 temperature 10.0 270 > th dose dependent rect. 14 2
271 257.90 radiation 40.0 90 < th dose independent rect. 14 19
283 258.39 temperature 15.0 270 > th dose independent rect. 2 15
291 259.17 temperature 10.0 10 > th dose dependent rect. 14 6
298 259.47 humidity 90.0 270 < th dose independent rect. 13 4
299 259.47 precipitation 0.1 270 < th dose independent rect. 16 22
301 259.47 precipitation 0.1 270 < th dose dependent rect. 16 22
304 259.63 humidity 50.0 270 > th dose independent rect. 7 6
311 259.72 atmosphere 995.0 270 > th dose independent rect. 14 2
326 260.16 precipitation 0.1 270 < th dose independent rect. 23 9
327 260.16 precipitation 0.1 270 < th dose dependent rect. 23 9
341 260.55 wind 9.0 270 < th dose independent rect. 11 22
349 260.73 temperature 10.0 270 > th dose independent rect. 9 2
350 260.73 atmosphere 995.0 270 > th dose independent rect. 9 2
351 260.73 atmosphere 1015.0 270 < th dose independent rect. 9 2
352 260.73 temperature 10.0 270 > th dose independent rect. 11 22
360 261.00 humidity 90.0 270 < th dose independent rect. 12 6
370 261.27 atmosphere 1015.0 270 < th dose independent rect. 13 18
371 261.30 radiation 40.0 270 < th dose dependent rect. 23 9
374 261.39 precipitation 0.1 270 < th dose independent rect. 9 2
375 261.39 precipitation 0.1 270 < th dose dependent rect. 9 2
378 261.48 humidity 50.0 270 > th dose independent rect. 17 9
381 261.54 precipitation 0.1 270 < th dose independent rect. 8 15
382 261.54 precipitation 0.1 270 < th dose dependent rect. 8 15
398 262.01 wind 9.0 270 < th dose independent rect. 2 15
405 262.49 wind 9.0 270 < th dose independent rect. 9 2
414 262.77 radiation 40.0 270 < th dose independent rect. 14 2
417 262.92 radiation 20.0 270 < th dose dependent rect. 17 9
424 263.24 radiation 1.0 270 > th dose independent rect. 14 2
426 263.28 wind 1.0 270 > th dose independent rect. 9 2
427 263.28 wind 9.0 270 < th dose independent rect. 16 22
428 263.46 radiation 10.0 270 < th dose independent rect. 17 9
440 264.07 wind 1.0 270 > th dose independent rect. 17 10
441 264.11 temperature 30.0 270 < th dose independent rect. 7 5
447 264.33 wind 9.0 270 < th dose independent rect. 8 15
455 264.94 precipitation 0.1 10 < th dose independent rect. 14 6
456 264.94 precipitation 0.1 10 < th dose dependent rect. 14 6
471 265.60 temperature 10.0 270 > th dose independent rect. 17 9
476 265.60 atmosphere 1015.0 270 < th dose independent rect. 2 15
486 265.92 wind 9.0 270 < th dose independent rect. 17 9
488 265.99 humidity 50.0 270 > th dose independent rect. 9 2
500 266.39 wind 9.0 270 < th dose dependent rect. 23 9
571 268.26 wind 1.0 270 > th dose independent rect. 8 15
587 268.59 temperature 10.0 10 > th dose independent rect. 14 6
589 268.59 atmosphere 1010.0 10 < th dose independent rect. 14 6
591 268.59 temperature 10.0 10 > th dose independent rect. 20 18
592 268.59 atmosphere 995.0 10 > th dose independent rect. 20 18
593 268.67 wind 1.0 10 > th dose independent rect. 14 6
615 268.97 radiation 40.0 10 < th dose independent rect. 14 6
617 269.07 radiation 1.0 270 > th dose independent rect. 9 2
629 269.79 wind 9.0 10 < th dose independent rect. 14 6
640 270.20 temperature 30.0 270 < th dose independent rect. 17 9
650 270.60 atmosphere 995.0 270 > th dose independent rect. 17 9
664 271.09 humidity 90.0 270 < th dose independent rect. 14 2
667 271.39 precipitation 0.1 270 < th dose independent rect. 17 9
668 271.39 precipitation 0.1 270 < th dose dependent rect. 17 9
676 271.68 precipitation 0.1 10 < th dose independent rect. 20 18
677 271.68 precipitation 0.1 10 < th dose dependent rect. 20 18
694 271.99 precipitation 0.1 270 < th dose independent rect. 2 15
695 271.99 precipitation 0.1 270 < th dose dependent rect. 2 15
759 273.01 wind 9.0 270 < th dose dependent rect. 13 4
768 273.32 radiation 40.0 10 < th dose independent rect. 14 19
775 273.51 wind 9.0 10 < th dose independent rect. 20 18
817 274.74 radiation 1.0 270 > th dose independent rect. 4 9
860 275.36 atmosphere 995.0 10 > th dose independent rect. 14 6
869 275.56 atmosphere 1015.0 270 < th dose dependent rect. 13 4
884 275.95 atmosphere 995.0 270 > th dose independent rect. 2 15
893 276.02 atmosphere 995.0 270 > th dose dependent rect. 8 4
900 276.18 humidity 50.0 270 > th dose independent rect. 8 15
920 276.57 atmosphere 995.0 270 > th dose dependent rect. 9 2
945 277.17 radiation 1.0 90 < th dose dependent sin 14 NA
952 277.26 temperature 10.0 10 > th dose independent rect. 9 5
954 277.26 atmosphere 995.0 10 > th dose independent rect. 9 5
955 277.26 atmosphere 1015.0 10 < th dose independent rect. 9 5
956 277.26 precipitation 0.1 10 < th dose independent rect. 9 5
957 277.26 temperature 10.0 10 > th dose independent rect. 14 19
958 277.26 precipitation 0.1 10 < th dose dependent rect. 9 5
978 277.86 atmosphere 995.0 270 > th dose independent rect. 8 15
982 277.90 radiation 40.0 10 < th dose dependent rect. 13 21